View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8246_low_38 (Length: 225)
Name: NF8246_low_38
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 41318931 - 41319026
Alignment:
| Q |
112 |
tgtaaagaataatgaagattcctctcttaatgaatcaaatcaagagaaatcaaacaaactattggaaaggaatatgtgtgaatgcaatgcattaat |
207 |
Q |
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| T |
41318931 |
tgtaaagaataatgaagattcctctcttaatgaatcaaatcaagagaaatcaaacaaaccattggaaaggaatatgtgtgaatgcaatgccttaat |
41319026 |
T |
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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 44524199 - 44524101
Alignment:
| Q |
112 |
tgtaaagaataatgaagattcctctcttaatga---atcaaatcaagagaaatcaaacaaactattggaaaggaatatgtgtgaatgcaatgcattaat |
207 |
Q |
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| T |
44524199 |
tgtaaagaataatgaagattcctctcttaatgatgaatcaaatcaagagaaatcaaacaaaccattggaaaggaatatgtgtgaatgtaatgccttaat |
44524101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 11831253 - 11831185
Alignment:
| Q |
112 |
tgtaaagaataatgaagattcctctcttaatgaatcaaatcaagagaaatcaaacaaactattggaaag |
180 |
Q |
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| T |
11831253 |
tgtaaagaataatgaagactcaactattaatgaatcaaatcaagacaaatcaaacaaactattggaaag |
11831185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 37130522 - 37130580
Alignment:
| Q |
112 |
tgtaaagaataatgaagattcctctcttaatgaatcaaatcaagagaaatcaaacaaac |
170 |
Q |
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| T |
37130522 |
tgtaaagaataatgaaaactcaactattaatgaatcaaatcaagacaaatcaaaaaaac |
37130580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 11831133 - 11831182
Alignment:
| Q |
112 |
tgtaaagaataatgaagattcctctcttaatgaatcaaatcaagagaaat |
161 |
Q |
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| T |
11831133 |
tgtaaagaataatgaagactcaactattaatgaatcaaatcaagacaaat |
11831182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 12503538 - 12503494
Alignment:
| Q |
111 |
gtgtaaagaataatgaagattcctctcttaatgaatcaaatcaaga |
156 |
Q |
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| T |
12503538 |
gtgtaaagaataacgaagattcctct-ttaatgaatcaaatcaaga |
12503494 |
T |
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