View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8246_low_40 (Length: 218)
Name: NF8246_low_40
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 54803598 - 54803418
Alignment:
| Q |
19 |
atatcttattctatacccaacacatctatcataatannnnnnnaggggtatctatcataatattctaatctaaaaaatattgagtgatattttttattca |
118 |
Q |
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| T |
54803598 |
atatcttattctatacccaacacatctatcataatatttttttaggggcatctatcataatattctaatttaaaaaatattgagtgatattttttattca |
54803499 |
T |
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| Q |
119 |
actttagagctataacaatattatggtgtcaccatggtttcgtcaatttcatttgcccgtataatcatgctataaaatttt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54803498 |
actttagagctataacaatattatggtgtcaccatggtttcgtcaatttcatttgcccatataatcatgctataaaatttt |
54803418 |
T |
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