View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8246_low_41 (Length: 210)

Name: NF8246_low_41
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8246_low_41
NF8246_low_41
[»] chr4 (6 HSPs)
chr4 (10-192)||(7628800-7628982)
chr4 (10-192)||(7637246-7637428)
chr4 (38-192)||(7615429-7615583)
chr4 (27-188)||(7606419-7606580)
chr4 (76-185)||(7655961-7656070)
chr4 (112-185)||(7633577-7633650)
[»] chr7 (4 HSPs)
chr7 (29-188)||(8910939-8911098)
chr7 (41-192)||(8935890-8936041)
chr7 (89-188)||(8938714-8938813)
chr7 (112-185)||(8918977-8919050)
[»] chr3 (2 HSPs)
chr3 (21-185)||(40147134-40147298)
chr3 (70-182)||(8102650-8102762)
[»] chr6 (2 HSPs)
chr6 (76-182)||(6500675-6500781)
chr6 (101-165)||(11969138-11969202)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 7628982 - 7628800
Alignment:
Q  10 gtttggtgttatgtgacccgtttcaaacaatttgacccacaagaagaagtatttaatagagtcgtgataggagttagaccaaggcttattccaccattac 109  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7628982 gtttggtgctatgtgacccgtttcaaacaatttgacccacaagaagaagtatttaatagagtcgcgataggagttagaccaaggcttattccaccattac 7628883  T
Q  110 cagaagattattttggaaatgcacttataagttgtatggttaaaatgaaagctggggaattgttggaggaaggtggactttgt 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7628882 cagaagattattttggaaatgcacttataagttgtatggttaaaatgaaagctgaggaattgttggaggaaggtggactttgt 7628800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 7637428 - 7637246
Alignment:
Q  10 gtttggtgttatgtgacccgtttcaaacaatttgacccacaagaagaagtatttaatagagtcgtgataggagttagaccaaggcttattccaccattac 109  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |  ||||||| ||||    
T  7637428 gtttggtgctatgtgacccgtttcaaacaatttgacccacaagaagaagtatttaatagagtcgtgataggagttcgaccaaggttagttccaccgttac 7637329  T
Q  110 cagaagattattttggaaatgcacttataagttgtatggttaaaatgaaagctggggaattgttggaggaaggtggactttgt 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7637328 cagaagattattttggaaatgcacttataagttgtatggttaaaatgaaagctggggaattgttggaggaaggtggactttgt 7637246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 38 - 192
Target Start/End: Complemental strand, 7615583 - 7615429
Alignment:
Q  38 aatttgacccacaagaagaagtatttaatagagtcgtgataggagttagaccaaggcttattccaccattaccagaagattattttggaaatgcacttat 137  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||| |||||||| |  ||||||||||||||||| ||||||||||||||||||||||    
T  7615583 aatttgacccacaagaagaagtatttaatatagttgtgataggagttcgaccaaggttagttccaccattaccagaatattattttggaaatgcacttat 7615484  T
Q  138 aagttgtatggttaaaatgaaagctggggaattgttggaggaaggtggactttgt 192  Q
    ||||||||||||||||||||||| |||||| ||| |||| |||||||||||||||    
T  7615483 aagttgtatggttaaaatgaaagttggggagttggtggaagaaggtggactttgt 7615429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 27 - 188
Target Start/End: Complemental strand, 7606580 - 7606419
Alignment:
Q  27 ccgtttcaaacaatttgacccacaagaagaagtatttaatagagtcgtgataggagttagaccaaggcttattccaccattaccagaagattattttgga 126  Q
    ||||| |||||||||||||| |||||||||||||| ||||  |||||||||||||||| |||||||| || |||||||||||||||||||||||||||||    
T  7606580 ccgttccaaacaatttgacctacaagaagaagtatataatctagtcgtgataggagttggaccaaggtttgttccaccattaccagaagattattttgga 7606481  T
Q  127 aatgcacttataagttgtatggttaaaatgaaagctggggaattgttggaggaaggtggact 188  Q
    ||  |  ||||||||||||| || |||||||||| ||| || |||||||| |||||||||||    
T  7606480 aactcgattataagttgtatagtcaaaatgaaagttggtgagttgttggacgaaggtggact 7606419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 76 - 185
Target Start/End: Original strand, 7655961 - 7656070
Alignment:
Q  76 ataggagttagaccaaggcttattccaccattaccagaagattattttggaaatgcacttataagttgtatggttaaaatgaaagctggggaattgttgg 175  Q
    ||||||||||||||||| ||| |||||||||| || ||||||||||||||||| ||  ||||| ||||   | |||||||||||| |||||| |||||||    
T  7655961 ataggagttagaccaagacttgttccaccattgccggaagattattttggaaacgcgattataggttgcgggtttaaaatgaaagttggggagttgttgg 7656060  T
Q  176 aggaaggtgg 185  Q
    ||||||||||    
T  7656061 aggaaggtgg 7656070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 7633650 - 7633577
Alignment:
Q  112 gaagattattttggaaatgcacttataagttgtatggttaaaatgaaagctggggaattgttggaggaaggtgg 185  Q
    ||||||| ||||||||||||| ||||| |||||| ||||||||| |||| |||||| || |||||||| |||||    
T  7633650 gaagattgttttggaaatgcagttatatgttgtaaggttaaaattaaagttggggagttattggaggagggtgg 7633577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 29 - 188
Target Start/End: Original strand, 8910939 - 8911098
Alignment:
Q  29 gtttcaaacaatttgacccacaagaagaagtatttaatagagtcgtgataggagttagaccaaggcttattccaccattaccagaagattattttggaaa 128  Q
    |||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| |||||||| |  ||||||||||||||||| |||||||||||||    
T  8910939 gtttcaaacaatttgatccacaagatgaagtatttaatagagtcatgataggagttggaccaaggttagttccaccattaccagaatattattttggaaa 8911038  T
Q  129 tgcacttataagttgtatggttaaaatgaaagctggggaattgttggaggaaggtggact 188  Q
    |||| || |||||||||||||||||||||||| ||||||  |||||||||||||||||||    
T  8911039 tgcaattgtaagttgtatggttaaaatgaaagttggggagctgttggaggaaggtggact 8911098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 41 - 192
Target Start/End: Original strand, 8935890 - 8936041
Alignment:
Q  41 ttgacccacaagaagaagtatttaatagagtcgtgataggagttagaccaaggcttattccaccattaccagaagattattttggaaatgcacttataag 140  Q
    |||||||||||||||||||  |||||||| |||||||||||||| |||||||| |  ||||||||||||||||| ||||||||||||||||| |||||||    
T  8935890 ttgacccacaagaagaagtggttaatagaatcgtgataggagttggaccaaggttagttccaccattaccagaatattattttggaaatgcagttataag 8935989  T
Q  141 ttgtatggttaaaatgaaagctggggaattgttggaggaaggtggactttgt 192  Q
    ||||||||||||||||| ||||||||| |||||| |||||||||||||||||    
T  8935990 ttgtatggttaaaatgacagctggggagttgttgaaggaaggtggactttgt 8936041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 8938714 - 8938813
Alignment:
Q  89 caaggcttattccaccattaccagaagattattttggaaatgcacttataagttgtatggttaaaatgaaagctggggaattgttggaggaaggtggact 188  Q
    ||||| || |||||||||||||||||||||||||||||||  |  ||||||||||||| || |||||||||| ||| || |||||||| |||||||||||    
T  8938714 caaggtttgttccaccattaccagaagattattttggaaactcgattataagttgtatagtcaaaatgaaagttggtgagttgttggacgaaggtggact 8938813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 8918977 - 8919050
Alignment:
Q  112 gaagattattttggaaatgcacttataagttgtatggttaaaatgaaagctggggaattgttggaggaaggtgg 185  Q
    ||||||| ||||||||||||| ||||| |||||  ||||||||| |||| |||||| || |||||||| |||||    
T  8918977 gaagattgttttggaaatgcagttatatgttgtgaggttaaaattaaagttggggagttattggaggagggtgg 8919050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 40147134 - 40147298
Alignment:
Q  21 tgtgacccgtttcaaacaatttgacccacaagaagaagtatttaatagagtcgtgataggagttagaccaaggcttattccaccattaccagaagattat 120  Q
    ||||| ||||| |||||||||||||||||| |||||||| | | |||  |||| |||||||| |||| ||||| || |||||||||| || |||||||||    
T  40147134 tgtgatccgttccaaacaatttgacccacacgaagaagtttattatatggtcgcgataggagctagatcaaggtttgttccaccattgcctgaagattat 40147233  T
Q  121 tttggaaatgcacttataagttgtatggttaaaatgaaagctggggaattgttggaggaaggtgg 185  Q
    |||||||||||  ||  |  ||||| ||||| ||||||||| || || |||||||| || |||||    
T  40147234 tttggaaatgctgttgaagtttgtagggttacaatgaaagcgggagagttgttggaagatggtgg 40147298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 8102762 - 8102650
Alignment:
Q  70 gtcgtgataggagttagaccaaggcttattccaccattaccagaagattattttggaaatgcacttataagttgtatggttaaaatgaaagctggggaat 169  Q
    |||| |||||||||||||| |||| || |||||||||| || ||||||||||||||||||||  || ||  || |||||||  |||||||| |||||| |    
T  8102762 gtcgggataggagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagt 8102663  T
Q  170 tgttggaggaagg 182  Q
    ||||||| |||||    
T  8102662 tgttggaagaagg 8102650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 76 - 182
Target Start/End: Complemental strand, 6500781 - 6500675
Alignment:
Q  76 ataggagttagaccaaggcttattccaccattaccagaagattattttggaaatgcacttataagttgtatggttaaaatgaaagctggggaattgttgg 175  Q
    ||||| ||||||||||||||| |||||| ||||||| |||||||||||||||||||  | |||  ||||| |||||  ||||||||||| || |||||||    
T  6500781 ataggcgttagaccaaggcttgttccactattaccacaagattattttggaaatgctgtgatagattgtagggttagcatgaaagctggtgagttgttgg 6500682  T
Q  176 aggaagg 182  Q
    | |||||    
T  6500681 aagaagg 6500675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 11969202 - 11969138
Alignment:
Q  101 caccattaccagaagattattttggaaatgcacttataagttgtatggttaaaatgaaagctggg 165  Q
    |||||||||| || |||||||||||||||||  |||||| ||||  ||||  |||||||||||||    
T  11969202 caccattaccggaggattattttggaaatgctgttataatttgtggggtttcaatgaaagctggg 11969138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University