View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8246_low_5 (Length: 658)

Name: NF8246_low_5
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8246_low_5
NF8246_low_5
[»] chr3 (1 HSPs)
chr3 (7-641)||(49921350-49921984)


Alignment Details
Target: chr3 (Bit Score: 611; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 7 - 641
Target Start/End: Complemental strand, 49921984 - 49921350
Alignment:
Q  7 gagatgaacacgttcagacacaatacgcaagcgcgcattagctgtaaggaattcacagagcaattttaatccagaaaagggaaacttcaaagcaatcata 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49921984 gagatcaacacgttcagacacaatacgcaagcgcgcattagctgtaaggaattcacagagcaattttaatccagaaaagggaaacttcaaagcaatcata 49921885  T
Q  107 caatatcattatgcacaaaatcagtatagtgacagcttcatatctttcagatatcaattcacaacttcctatcttttaaaagagcttatataaattcaga 206  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49921884 caatatcattatgcacaaaatcagtatagtgacaccttcatatctttcagatatcaattcacaacttcctatcttttaaaagagcttatataaattcaga 49921785  T
Q  207 aacttaaaatgtagtgataagaagtttgcaacaaaacacagtcttaactctaaaactcgttgataagataaacttttcccttgcaaaggaagacaataaa 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49921784 aacttaaaatgtagtgataagaagtttgcaacaaaacacagtcttaattctaaaactcgttgataagataaacttttcccttgcaaaggaagacaataaa 49921685  T
Q  307 acttacgagaaagtggtgcagccgatgaatatcgttctggctttcgggattctaccctttaaatatatggaaagagttagtttcctacaacaatcaatga 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  49921684 acttacgagaaagtggtgcagccgatgaatatcgttctggctttcgggattctaccctttaaatatatggaaagagttagtttccttcaacaatcaatga 49921585  T
Q  407 aaaattacaggcaacaagaggggttgtaaaccaactagtttaattatagttttgttggcactagtgaccccacatccatggccaaagcattatttactcg 506  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49921584 aaaattacaggcaacaggaggggttgtataccaactagtttaattatagttttgttggcactagtgaccccacatccatggccaaagcattatttactcg 49921485  T
Q  507 tgctaataatttggagatgtgttaatggctagttatatggtcgacatactcataataacccattcaacaatatcaataacatgtttaatgaacttctttt 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49921484 tgctaataatttggagatgtgttaatggctagttatatggtcgacatactcataataacccattcaacaatatcaataacatgtttaatgaacttctttt 49921385  T
Q  607 ctcaattggactaacatagtgtggcatatcataac 641  Q
    |||||||||||||||||||||||||||||||||||    
T  49921384 ctcaattggactaacatagtgtggcatatcataac 49921350  T

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