View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8246_low_6 (Length: 627)
Name: NF8246_low_6
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_low_6 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 311 - 627
Target Start/End: Complemental strand, 18257105 - 18256798
Alignment:
| Q |
311 |
gcatttgttagaatgaccacgatcatcattactcattacatgcatttgtcaatgactattgaatgatcaattcaaattattcaaaaggaatatcaaaaac |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||| |
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| T |
18257105 |
gcatttgttagaatgaccacgatcatcattactcattacatgcatttgtcaatgactattgaatgatcaattcaaattattcagaaagaatattaaaaat |
18257006 |
T |
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| Q |
411 |
atatatttccactattccacactctatatataatagaaccaatttgaccacaaatacacacaaaatataacattatcaacaataacaacaaaaacatgaa |
510 |
Q |
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| T |
18257005 |
atatatttccactattccactctctatatataatagaaccaatttgaccacaaatacacacacaatataacattatcaacaat---------aacatgaa |
18256915 |
T |
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| Q |
511 |
gatgattctaacaatcttcttcattttttctcttctttcccttgctcatgcatccgtagtcgatttctgcgtagcagattacaatgcgccaaatggcccg |
610 |
Q |
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| T |
18256914 |
gatgattctaactatcttcttcattttttctcttctttcccttgctcatgcatccgtagtagatttctgcgtagcagattacaatgcaccaaatggcccg |
18256815 |
T |
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| Q |
611 |
gctggatattcttgcaa |
627 |
Q |
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| T |
18256814 |
gctggatattcttgcaa |
18256798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 302
Target Start/End: Original strand, 18251866 - 18252159
Alignment:
| Q |
9 |
tgagaagaaataacaagagtggtagagaaaagacatggatatataaaataaccaagcaattagatacaaatggttaatgagcatcgaggagaaattgttc |
108 |
Q |
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| T |
18251866 |
tgagaagaaataacaagagtggtagagaaaagacgtggatatataaaataaccaaacaattagatacaagtggttaataagtatcgaggagaaattgttc |
18251965 |
T |
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| Q |
109 |
aagagaaactgaatttgctttccgaccaaactccaaatcaccggtgtcatttcctagtgagaaggggagggtaaacactagctacaaactatatagtata |
208 |
Q |
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| T |
18251966 |
aagagaaactgagtttgctttctgaccaaactccaaatcaccggtgtcattttctagtgagaaggagagggtaaacactagctacaaactatatagcata |
18252065 |
T |
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| Q |
209 |
caaagtagaatctttatttagatacttttccaataacatgtcttaatttagtatttgttgtgaaaaagacaatgtaaccatctaagcctccatt |
302 |
Q |
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| T |
18252066 |
caaagtagaatctttatttagatacttttccaataacatgtctcaatttagtatttgttgtgaaaaagacaatgtaaccatctaagccttcatt |
18252159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 311 - 627
Target Start/End: Original strand, 18252468 - 18252770
Alignment:
| Q |
311 |
gcatttgttagaatgaccacgatcatcattactcattacatgcatttgtcaatgactattgaatgatcaattcaaattattcaaaaggaatatcaaaaac |
410 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
18252468 |
gcatttgttagaatgaccacaatcatcattactcattacatgcatttgtcaatgac-----aatgatcaattcaaattattcaaaaggaatataaaaaac |
18252562 |
T |
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| Q |
411 |
atatatttccactattccacactctatatataatagaaccaatttgaccacaaatacacacaaaatataacattatcaacaataacaacaaaaacatgaa |
510 |
Q |
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| T |
18252563 |
atatatttccactattccactctctatatataatagaaccaatttgaccacaaatacacacacaatataacattatcaacaat---------aacatgaa |
18252653 |
T |
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| Q |
511 |
gatgattctaacaatcttcttcattttttctcttctttcccttgctcatgcatccgtagtcgatttctgcgtagcagattacaatgcgccaaatggcccg |
610 |
Q |
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| T |
18252654 |
gatgattctaactatcttcttcattttttctcttctttcccttgctcatgcatccgtagtagatttctgcgtagcagattacaatgcaccaaatggcccg |
18252753 |
T |
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| Q |
611 |
gctggatattcttgcaa |
627 |
Q |
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||||||||||||||||| |
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| T |
18252754 |
gctggatattcttgcaa |
18252770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 424 - 627
Target Start/End: Original strand, 18245475 - 18245666
Alignment:
| Q |
424 |
attccacactctatatataatagaaccaatttgaccacaaatacacacaaaatataacattatcaacaataacaacaaaaacatgaagatgattctaaca |
523 |
Q |
| |
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||||||| ||||||||||| ||||||||| ||||||||||| |||||||||| ||||| ||||||||| | ||||||||||| || | |
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| T |
18245475 |
attccactctctatatatagtagaaccaaattgaccacaaaaacacacaaaacctaacactatcaacaaaa------------tgaagatgattgtagct |
18245562 |
T |
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| Q |
524 |
atcttcttcattttttctcttctttcccttgctcatgcatccgtagtcgatttctgcgtagcagattacaatgcgccaaatggcccggctggatattctt |
623 |
Q |
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| T |
18245563 |
atctccttcattttttctcttctttccctttctcatgcatcagtagtagatttctgcgtagcagattacaatttaccaaatggccccgccggatattctt |
18245662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 31221543 - 31221611
Alignment:
| Q |
226 |
ttagatacttttccaataacatgtcttaatttagtattt-gttgtgaaaaagacaatgtaaccatctaa |
293 |
Q |
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|||||||||||||||||| ||||||| | | |||||||| ||| ||||||||||||| ||||||||||| |
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| T |
31221543 |
ttagatacttttccaatagcatgtctcattctagtattttgttctgaaaaagacaatctaaccatctaa |
31221611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 218 - 293
Target Start/End: Original strand, 31246112 - 31246188
Alignment:
| Q |
218 |
atctttatttagatacttttccaataacatgtcttaatttagta-tttgttgtgaaaaagacaatgtaaccatctaa |
293 |
Q |
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|||||||||||||| ||||| || |||||| ||| ||||||||| |||||| | ||||||||||||| ||| |||| |
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| T |
31246112 |
atctttatttagatgcttttgcagtaacatatctcaatttagtattttgttacgtaaaagacaatgtagccacctaa |
31246188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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