View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8246_low_7 (Length: 615)
Name: NF8246_low_7
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_low_7 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 544; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 16 - 615
Target Start/End: Complemental strand, 1495618 - 1495019
Alignment:
| Q |
16 |
tgaaggtcacatgttttcaaatatcggaagcctatctgctttgtagggataaggccgcatacatcttatttctccaaactccacttggtgggagccttgt |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1495618 |
tgaaggtcacatgttttcaaatatcggaagcctatctgctttgtagggataaggccgcatacatcttatttctccaaactccacttggtgggagccttgt |
1495519 |
T |
|
| Q |
116 |
gcactgagtcatcctatttgttgcatggcattgttgatctaattgtgttcatgctttcttatcacagactgccttcactacaaagaaagactatggaaaa |
215 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1495518 |
gcactgagtcgtcctatttgttgcatcgcattgttgatctaattgtgttcatgctttcttatcacagactgccttcactacaaagaaagactatggaaaa |
1495419 |
T |
|
| Q |
216 |
gaagagagggaagcacaatgggcggctgcgcagagaacacttcacggtcttcagcctccggaagcctccaatgttttcaatgaaaagaatagctatagag |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1495418 |
gaagagagggaagcacaatgggcggctgcgcagagaacacttcacggtcttcagcctccggaagcctccaacgttttcaatgaaaagaatagctatagag |
1495319 |
T |
|
| Q |
316 |
aactttcggagattgcggagcaagccaagagacgtgctgaagttgcaaggcttagggaggttcatactctcaagggacatgtagaatcggtggtgaagct |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1495318 |
aactttcggagattgcggagcaagccaagagacgtgctgaagttgcaaggcttagggaggttcatactctcaagggacatgtagaatcagtggtgaagct |
1495219 |
T |
|
| Q |
416 |
gaagggactagacattgatacaattcagcagcactacacagtttaagaagcttcaacaattttcaagaaagactcgaagatcttagtcaatctatctttn |
515 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1495218 |
gaagggactagatattgatacaattcagcagcactacacagtttaagaagcttcaacaattttcaagaaagactcgaagatcttagtcaatctatcttta |
1495119 |
T |
|
| Q |
516 |
nnnnnnnggtgtcttgtaaaaatttatatggttaatccttttactatctatgctaggaggagatactattctcaagtatcaaataacatcactgatatag |
615 |
Q |
| |
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|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1495118 |
aaaaaaaggtgtcttgtaaaaatttggatggataatccttttactatctatgctaggaggagatactattctcaagtatcaaataacatcactgatatag |
1495019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 1490630 - 1490538
Alignment:
| Q |
144 |
cattgttgatctaattgtgttcatgctttcttatcacagactgccttcactacaaagaaagactatggaaaagaagagagggaagcacaatgg |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||| ||||||||||| |||||||||||| |
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| T |
1490630 |
cattgttgatctaattgtgttcatgctttcttatcacagactacattcactaacaagaaagactatggtaaagaagagagagaagcacaatgg |
1490538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 146 - 364
Target Start/End: Original strand, 1491624 - 1491839
Alignment:
| Q |
146 |
ttgttgatctaattgtgttcatgctttcttatcacagactgccttcactacaaagaaagactatggaaaagaagagagggaagcacaatgggcggctgcg |
245 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| |||||| ||||||| |||||||||||||| ||| || |||| ||||||||||||| | | |
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| T |
1491624 |
ttgttgatctaactgtgttcatgctttcttatcactgactgcattcactaacaagaaagactatggtaaataacagagagaagcacaatgggaaacaaca |
1491723 |
T |
|
| Q |
246 |
cagagaacacttcacggtcttcagcctccggaagcctccaatgttttcaatgaaaagaatagctatagagaactttcggagattgcggagcaagccaaga |
345 |
Q |
| |
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|| || ||||||| |||||||| ||| |||| || ||||||||||||| | ||||||||| || ||||| |||||||| ||||||| ||||| |
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| T |
1491724 |
caaggatcacttcatggtcttcaacct---tttacctcaaaccttttcaatgaaaatagtagctatagggagctttcagagattgcagagcaagacaaga |
1491820 |
T |
|
| Q |
346 |
gacgtgctgaagttgcaag |
364 |
Q |
| |
|
|| ||||||||||||||| |
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|
| T |
1491821 |
aacatgctgaagttgcaag |
1491839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 363 - 451
Target Start/End: Complemental strand, 1488593 - 1488505
Alignment:
| Q |
363 |
aggcttagggaggttcatactctcaagggacatgtagaatcggtggtgaagctgaagggactagacattgatacaattcagcagcacta |
451 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||||||||| |||||| ||||||| |||||||| ||||||||||||||||||||| |||| |
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|
| T |
1488593 |
aggcttagggagcgtcataatctaaagggacatgtagtatcggtcttgaagctaaagggacttgacattgatacaattcagcagtacta |
1488505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 179 - 365
Target Start/End: Original strand, 1464268 - 1464451
Alignment:
| Q |
179 |
acagactgccttcactacaaagaaagactatggaaaagaagagagggaagcacaatgggcggctgcgcagagaacacttcacggtcttcagcctccggaa |
278 |
Q |
| |
|
||||||||||||||| |||||||||||||||| | |||| | ||||||||||||||||| | ||||| ||| ||| || |||||||||||||| |
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| T |
1464268 |
acagactgccttcacatcaaagaaagactatggtagagaaaatagggaagcacaatgggcatcagcgcaaagatcacgccatggtcttcagcctcc---t |
1464364 |
T |
|
| Q |
279 |
gcctccaatgttttcaatgaaaagaatagctatagagaactttcggagattgcggagcaagccaagagacgtgctgaagttgcaagg |
365 |
Q |
| |
|
||||||| | ||||||| | | ||||||| || ||||| |||||||| ||||||||||||| |||||||||| | |||||| |
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| T |
1464365 |
acctccaacactatcaatgagtatagtagctatgaggagctttcagagattgcagagcaagccaagaaacgtgctgaaatggcaagg |
1464451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 208
Target Start/End: Complemental strand, 1488955 - 1488812
Alignment:
| Q |
63 |
gataaggccgcatacatcttatttctccaaactccacttggtgggagccttgtgcactgagtcatcctatttgttgcatggcattgttgatctaattgtg |
162 |
Q |
| |
|
|||| ||| |||||||||| ||||| |||| | ||||| |||||||| | |||||||| || ||||||||||| ||||||||||||||| |||| |
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|
| T |
1488955 |
gatacggctgcatacatctgctttcttcaaaattcacttagtgggagcttcatgcactgattcgtcctatttgtt-----gcattgttgatctaactgtg |
1488861 |
T |
|
| Q |
163 |
--ttcatgc-tttcttatcacagactgccttcactacaaagaaagacta |
208 |
Q |
| |
|
||||||| ||||| |||||||| || |||||||| |||||||||||| |
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|
| T |
1488860 |
ttttcatgcttttctcatcacagattgacttcactataaagaaagacta |
1488812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 4155609 - 4155666
Alignment:
| Q |
150 |
tgatctaattgtg--ttcatgctttcttatcacagactgccttcactacaaagaaaga |
205 |
Q |
| |
|
||||||||||||| |||||| ||||| ||||||| |||||||||||||||| ||||| |
|
|
| T |
4155609 |
tgatctaattgtgatttcatgttttctcatcacaggctgccttcactacaaataaaga |
4155666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 179 - 362
Target Start/End: Original strand, 50277991 - 50278174
Alignment:
| Q |
179 |
acagactgccttcactacaaagaaagactatggaaaagaagagagggaagcacaatgggcggctgcgcagagaacacttcacggtcttcagcctccggaa |
278 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| ||||| || ||||| |||| ||||| || ||||| ||||||||| | || || |
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|
| T |
50277991 |
acagactgccttcacaacaaagaaagactatggcaaagaagagagagaagctcagtgggcaactgctcagaggactcttcatggtcttcagtcacctgac |
50278090 |
T |
|
| Q |
279 |
gcctccaatgttttcaatgaaaagaatagctatagagaactttcggagattgcggagcaagccaagagacgtgctgaagttgca |
362 |
Q |
| |
|
| |||| |||||||||| ||||||||||| || || ||||| |||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
50278091 |
acaaccaaccttttcaatgacaagaatagctacagggagctttctgagattgctgagcaagccaagagacgcgctgaagttgca |
50278174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 363 - 484
Target Start/End: Complemental strand, 15820657 - 15820534
Alignment:
| Q |
363 |
aggcttagggaggttcatactctcaagggacatgtagaatcggtggtgaagc-tgaagggactagacattgatacaattcagcagcactacacagtttaa |
461 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||| |||||||||| |||||||||| |||||| |||||||||||||||||| ||||||||| |
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|
| T |
15820657 |
aggcttagggaacttcatactctaaagggacatgtagaattagtggtgaagcatgaagggacttgacattaatacaattcagcagcactgaacagtttaa |
15820558 |
T |
|
| Q |
462 |
gaagctt-caacaattttcaagaa |
484 |
Q |
| |
|
| | ||| ||||||||||||||| |
|
|
| T |
15820557 |
ggaccttaaaacaattttcaagaa |
15820534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 7979799 - 7979720
Alignment:
| Q |
143 |
gcattgttgatctaattgtgtt--catgctttcttatcacagactgccttcactacaaagaaagactatggaaaagaaga |
220 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| ||||||| ||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
7979799 |
gcattgttgatataattgtgttttcatgctttctcatcacagtgtgccttcactacaaagaaagactttggcaaagaaga |
7979720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 26791953 - 26792039
Alignment:
| Q |
152 |
atctaattgtgttcatgctttcttatcacagactgccttcactacaaagaaagactatggaaaagaagagagggaagcacaatgggc |
238 |
Q |
| |
|
||||||| ||||| || ||||| || |||||||||||||||| |||||||||||||||| | |||| ||||||||||||||||||| |
|
|
| T |
26791953 |
atctaatcgtgtttatattttctcattacagactgccttcacttcaaagaaagactatggtagagaacagagggaagcacaatgggc |
26792039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 179 - 365
Target Start/End: Complemental strand, 53074162 - 53073976
Alignment:
| Q |
179 |
acagactgccttcactacaaagaaagactatggaaaagaagagagggaagcacaatgggcggctgcgcagagaacacttcacggtcttcagcctccggaa |
278 |
Q |
| |
|
||||||||| ||||| || |||||||||||||||||||| ||||||||||| |||||||| ||| ||||| || || || || ||||| || || ||| |
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|
| T |
53074162 |
acagactgcattcaccaccaagaaagactatggaaaagaggagagggaagctcaatgggcacatgctcagaggactctacatggacttcaaccaccagaa |
53074063 |
T |
|
| Q |
279 |
gcctccaatgttttcaatgaaaagaatagctatagagaactttcggagattgcggagcaagccaagagacgtgctgaagttgcaagg |
365 |
Q |
| |
|
|| | |||||||||| |||| || || |||||||| || |||||||| |||||||| |||||| | ||||||||||||||| |
|
|
| T |
53074062 |
agttctggtattttcaatgagaagagcagttacagagaactgtccgagattgctgagcaagcgaagagaagagctgaagttgcaagg |
53073976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 378 - 455
Target Start/End: Complemental strand, 48434943 - 48434866
Alignment:
| Q |
378 |
catactctcaagggacatgtagaatcggtggtgaagctgaagggactagacattgatacaattcagcagcactacaca |
455 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||||| ||||||| || ||||||||||| ||||| || ||||||||| |
|
|
| T |
48434943 |
catacactcaagggacatgttgaatctgtggtgaagttgaagggtcttgacattgatacgattcaacaacactacaca |
48434866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 363 - 467
Target Start/End: Complemental strand, 53073870 - 53073766
Alignment:
| Q |
363 |
aggcttagggaggttcatactctcaagggacatgtagaatcggtggtgaagctgaagggactagacattgatacaattcagcagcactacacagtttaag |
462 |
Q |
| |
|
|||||| | ||| |||| || |||||||||||||| ||||| |||||||||||||| || | ||||||||||| || |||||||||||||| || | || |
|
|
| T |
53073870 |
aggcttcgtgagcttcacacactcaagggacatgttgaatctgtggtgaagctgaaaggtttggacattgatactatccagcagcactacaccgtgtgag |
53073771 |
T |
|
| Q |
463 |
aagct |
467 |
Q |
| |
|
||||| |
|
|
| T |
53073770 |
aagct |
53073766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 45196197 - 45196139
Alignment:
| Q |
180 |
cagactgccttcactacaaagaaagactatggaaaagaagagagggaagcacaatgggc |
238 |
Q |
| |
|
|||||||||||||| ||||||| || |||||||||| |||||| |||||||||||||| |
|
|
| T |
45196197 |
cagactgccttcacctcaaagaaggattatggaaaaggagagagagaagcacaatgggc |
45196139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 21979493 - 21979435
Alignment:
| Q |
180 |
cagactgccttcactacaaagaaagactatggaaaagaagagagggaagcacaatgggc |
238 |
Q |
| |
|
|||||||| ||||| |||||||||||||| || |||| ||||||||| || |||||||| |
|
|
| T |
21979493 |
cagactgcattcacaacaaagaaagactacggtaaaggagagagggaggctcaatgggc |
21979435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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