View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8246_low_8 (Length: 498)
Name: NF8246_low_8
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 195 - 481
Target Start/End: Complemental strand, 34779519 - 34779233
Alignment:
| Q |
195 |
gaaagctttgatgcttccgttgtaacaatgaagcactttaagatggcaatcaaacaggttcagccctcagaatttcagtcctaccaaaagctgtcagcaa |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34779519 |
gaaagctttgatgcttccgttgtaacaatgaagcactttaagatggcaatcaaacaggttcagccctcagaatttcagtcctaccaaaagctgtcagcaa |
34779420 |
T |
|
| Q |
295 |
aatttcaaagggctgtgttctctgatgcgatataaatggctaacttaatcacatgcacttacaacacatttggtaaatatttcctattccaccatgcatg |
394 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34779419 |
aatttcaaagggccgtgttctctgatgcgatataaatggttaacttaatcacatgcacttacaacacatttggtaaatatttcctattccaccatgcatg |
34779320 |
T |
|
| Q |
395 |
tttataatatctaatttcttttggagtctatactgcataattatgttaattgttacactatgttggtattttctcctggctatttct |
481 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
34779319 |
tttataatatctaatttcttttggagtctgtactgcataattatgttaattgttacagtatgttggtattttctccttgctatttct |
34779233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 4108235 - 4108064
Alignment:
| Q |
1 |
atgcccacaaaatgtatagatacgatataagcgtttataagggctttttatttcataagatactttatgaaatactgtatgaggtgttggtatagtagca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4108235 |
atgcccacaaaatgtatagatacgatataagggtttataagggctttt-atttcataagatactttatgaaatactgtatgaggtgttggtatagtagca |
4108137 |
T |
|
| Q |
101 |
acgatgttatgtaaggtagaattttttactcatgataattgatgtaggaacattgatgaaataaatgtacata |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4108136 |
acgatgttatgtaaggtagaattttttactcatgataattcatgtaggaacattgatgaaataaatgtacata |
4108064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 195 - 316
Target Start/End: Original strand, 34682858 - 34682979
Alignment:
| Q |
195 |
gaaagctttgatgcttccgttgtaacaatgaagcactttaagatggcaatcaaacaggttcagccctcagaatttcagtcctaccaaaagctgtcagcaa |
294 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| ||||| ||||||||| |||||| ||||||||| |
|
|
| T |
34682858 |
gaaaactttgatgcttccgttgtaacaatgaagcactttaagacggcaattgaacaagttcagcccacagaaactcagtcctatcaaaagttgtcagcaa |
34682957 |
T |
|
| Q |
295 |
aatttcaaagggctgtgttctc |
316 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
34682958 |
aatttcaaagggctgtgttctc |
34682979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University