View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8246_low_9 (Length: 490)
Name: NF8246_low_9
Description: NF8246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8246_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 209 - 473
Target Start/End: Complemental strand, 23994439 - 23994171
Alignment:
| Q |
209 |
atctctactgcaactaccatttcttcatcacaatcctcttctttcacgctttctggtactatttttctttccattttctactacttgttgtg---catct |
305 |
Q |
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| T |
23994439 |
atctctactacaactaccatttcttcatcacaatcctcttctttcacgctctccggtactatttttctttccattttctactacttgttgttgcacattt |
23994340 |
T |
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| Q |
306 |
cactttcaattttannnnnnngttcaaaatagaaaattagaaccattgattaggatatttatcataaggattagaaccattgattagga-nnnnnnnnnn |
404 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
23994339 |
cactctcaattttaattttttgttcaaaatagaaaattagaaccattgattaggatatttattataaggattagaaccgttgattaggattttttatttt |
23994240 |
T |
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| Q |
405 |
nnnnngttgaatttgtgatttctgtgtgtgtctgtgtccaatgaaacaactcttacctctatttataat |
473 |
Q |
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| T |
23994239 |
tttttgttgaatttgtgatttctgtgtgtgtctgtgtccaatcaaacaactcttacctctatttataat |
23994171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 23994634 - 23994457
Alignment:
| Q |
11 |
gagaagaacacacacatggaacttctgcgcaacgcttattcgaattcctcagatgaagaagaagaaaaacccaaacgattgaaatcatctcacactcctt |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||||||| ||| |
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| T |
23994634 |
gagaagaacacacacatggaacttctgcgcaacgcttattcaaattcctcagatgaagaagaagaa---cccaaacgactaaaatcatctcacacttctt |
23994538 |
T |
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| Q |
111 |
catacccaccaaaaccctatctcccttctccttctcc------cattcttccaggtagctacgtttccaaacgacaacgcg |
185 |
Q |
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| T |
23994537 |
catacccaccaaaaccctatctcccttctccttctccttctctcattcttccaggtagctacgtttccaaacgacaacgcg |
23994457 |
T |
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