View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8247_high_11 (Length: 240)
Name: NF8247_high_11
Description: NF8247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8247_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 5601601 - 5601377
Alignment:
| Q |
1 |
acattattgagtatgaacctgttggggccagccgccatcttctagttgcgaattgataattaaatttgcagcacgatgaagaggagtagggtctatcttc |
100 |
Q |
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| T |
5601601 |
acattattgagtatgaacctgttggggccagccgccatcttctagttgcgaattgataattaaatttgcagcacgatgaagaggagtagggtctatcttc |
5601502 |
T |
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| Q |
101 |
gcctgcacataagaaattagcatttattttgaaattacgtcggcttgttacttggtggttgacttaatgttttgtaacggtccgaggattagattggcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5601501 |
gcctgcacataagaaattagcatttattttgaaattacgtcggcttgttacttggtggttgacttaatgttttgtaacggtctgaggattagattggcaa |
5601402 |
T |
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| Q |
201 |
gttatatatgtcatagcttggtgct |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
5601401 |
gttatatatgtcatagcttggtgct |
5601377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 5639019 - 5639243
Alignment:
| Q |
1 |
acattattgagtatgaacctgttggggccagccgccatcttctagttgcgaattgataattaaatttgcagcacgatgaagaggagtagggtctatcttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5639019 |
acattattgagtatgaacctgttggggccagccgccatcttctagttgcgaattgataattaaatttgcagcacgatgaagaggagtagggtctatcttc |
5639118 |
T |
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| Q |
101 |
gcctgcacataagaaattagcatttattttgaaattacgtcggcttgttacttggtggttgacttaatgttttgtaacggtccgaggattagattggcaa |
200 |
Q |
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| T |
5639119 |
gcctgcacataagaaattagcatttattttgaaattacgtcggcttgttacttggtggttgacttaatgttttgtaacggtctgaggattagattggcaa |
5639218 |
T |
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| Q |
201 |
gttatatatgtcatagcttggtgct |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
5639219 |
gttatatatgtcatagcttggtgct |
5639243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 3 - 133
Target Start/End: Original strand, 5652156 - 5652286
Alignment:
| Q |
3 |
attattgagtatgaacctgttggggccagccgccatcttctagttgcgaattgataattaaatttgcagcacgatgaagaggagtagggtctatcttcgc |
102 |
Q |
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||||||||||||||||||||||||||||| | || ||||||| ||| |||||||| ||||| ||||||||||||||||||| ||| |||||||||| ||| |
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| T |
5652156 |
attattgagtatgaacctgttggggccagtcaccctcttctaattgggaattgatgattaattttgcagcacgatgaagagtagttgggtctatctccgc |
5652255 |
T |
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| Q |
103 |
ctgcacataagaaattagcatttattttgaa |
133 |
Q |
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| T |
5652256 |
ctgcacataagaaattagcaattattttgaa |
5652286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 5686961 - 5687014
Alignment:
| Q |
52 |
attgataattaaatttgcagcacgatgaagaggagtagggtctatcttcgcctg |
105 |
Q |
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|||||| ||||| ||| |||||||||||||||||||||||||| ||| |||||| |
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| T |
5686961 |
attgatgattaattttacagcacgatgaagaggagtagggtctctctccgcctg |
5687014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 5665948 - 5666040
Alignment:
| Q |
13 |
atgaacctgttggggccagccgccatcttctagttgcgaattgataattaaatttgcagcacgatgaagaggagtagggtctatcttcgcctg |
105 |
Q |
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|||||||||||||||||| | || || | |||||| |||||| ||||| ||| ||||||||||||||||||||| |||| ||| |||||| |
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| T |
5665948 |
atgaacctgttggggccaatcaccctcctttagttggagattgatgattaattttacagcacgatgaagaggagtagcgtctctctccgcctg |
5666040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 5719038 - 5719130
Alignment:
| Q |
13 |
atgaacctgttggggccagccgccatcttctagttgcgaattgataattaaatttgcagcacgatgaagaggagtagggtctatcttcgcctg |
105 |
Q |
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| T |
5719038 |
atgaacctgttggggccaatcaccctcctcttgttggagattgatgattaattttacagcacgatgaagaggagtagcgtctctctccgcctg |
5719130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 166855 - 166774
Alignment:
| Q |
13 |
atgaacctgttggggccagccgccatcttctagttgcgaattgataattaaatttgcagcacgatgaagaggagtagggtct |
94 |
Q |
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|||||||||||||||||| ||| ||||| | || |||||||| | || |||||||||||||||||||||||||||||| |
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| T |
166855 |
atgaacctgttggggccaattgccttcttccaactgggaattgatgagcaattttgcagcacgatgaagaggagtagggtct |
166774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 106318 - 106240
Alignment:
| Q |
16 |
aacctgttggggccagccgccatcttctagttgcgaattgataattaaatttgcagcacgatgaagaggagtagggtct |
94 |
Q |
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||||||||||||||| |||| ||||| | || |||||||| | || |||||||||||||| ||||||||||||||| |
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| T |
106318 |
aacctgttggggccaatcgccttcttccaactgggaattgatgagcaattttgcagcacgatggagaggagtagggtct |
106240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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