View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8247_high_12 (Length: 227)
Name: NF8247_high_12
Description: NF8247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8247_high_12 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 52646082 - 52645856
Alignment:
| Q |
1 |
gaaaccattaagggattaatttctctgttggagaatcccgataggaaagttttattctccgcttgcaatgccattttggatttgtctaccacagctttcg |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52646082 |
gaaaccatcaagggattaatttctctgttggagaatcccgataggaaagttttatcctccgcttgcaatgccattttggatttgtctaccacagctttcg |
52645983 |
T |
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| Q |
101 |
ctcaacagcaacttctcaatttctctgccttgcacaaactaatgtaaggctatatgctattgcaattacttttagcttctgtttagattgaattatttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52645982 |
ctcaacagcaacttctcaatttctctgccttgcacaaactaatgtaaggctatatgctattgcaattacttttagcttctgtttagattgaattatttca |
52645883 |
T |
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| Q |
201 |
gtttatgtataagctatttctataaca |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
52645882 |
gtttatgtataagctatttctataaca |
52645856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 35934854 - 35934960
Alignment:
| Q |
1 |
gaaaccattaagggattaatttctctgttggagaatcccgataggaaagttttattctccgcttgcaatgccattttggatttgtctaccacagctttcg |
100 |
Q |
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|||||| ||||||||||||| || || ||||||| |||| |||| |||||||| |||||||||||||| | | |||||||| |||||||| ||||||| |
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| T |
35934854 |
gaaaccgttaagggattaatctcacttttggagagtcccaatagaaaagtttttatctccgcttgcaatacactcttggatttctctaccaccgctttcg |
35934953 |
T |
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| Q |
101 |
ctcaaca |
107 |
Q |
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| T |
35934954 |
cccaaca |
35934960 |
T |
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