View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8247_high_8 (Length: 248)
Name: NF8247_high_8
Description: NF8247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8247_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 36565972 - 36566200
Alignment:
| Q |
1 |
agcgataaagaggttaatgattcgatctcaactttaaacataaaaaatataaatagtaatttttcgtttcgnnnnnnnnnnnncaatataagctgatatt |
100 |
Q |
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| T |
36565972 |
agcgataaagaggttaatgattcgatctcgacttcaaacgtaaaaaatataaatagtaatttttcgtttcaaaaaaccaaaaacaatataagctgatatt |
36566071 |
T |
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| Q |
101 |
gatatgtgatatattatttatttatttctaaagtggtgacttattttattttcataataaaccaattaattaattaattaacattggatgtcaacttttc |
200 |
Q |
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| T |
36566072 |
gatatgtgatatattatttatttatttctaaagtggtgacttattttattttcataataaacc----aattaattaattaacattggatgtcaacttttc |
36566167 |
T |
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| Q |
201 |
-acagaatgtgataccactatggaaggaaatag |
232 |
Q |
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| T |
36566168 |
tacagaatgtgataccgctatggaaggaaatag |
36566200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 228
Target Start/End: Original strand, 36577061 - 36577090
Alignment:
| Q |
199 |
tcacagaatgtgataccactatggaaggaa |
228 |
Q |
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| T |
36577061 |
tcacagaatgtgataccactatggaaggaa |
36577090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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