View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8247_low_1 (Length: 674)
Name: NF8247_low_1
Description: NF8247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8247_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 16 - 575
Target Start/End: Original strand, 11440053 - 11440612
Alignment:
| Q |
16 |
atcatagatagtatcagctaagataacaaaagtataataaatttacaaaacaaacaacaaattcacatgtttatggtgtacaaaaattgtagcagaccct |
115 |
Q |
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| T |
11440053 |
atcatagatagtatcagctaagataacaaaagtataataaatttacaaaacaaacaacaaattcacatgtttatagtgtacaaaaattgtagcagaacct |
11440152 |
T |
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| Q |
116 |
ataaacaaacagttaatgatgtttgaacacaatcaaaagaaataaaaacagtaaaattttagcttatagaggcaaaaccaatcacaatgagataaacaca |
215 |
Q |
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| T |
11440153 |
atgaacaaacagttaatgatgtttcaacacaatcaaaagaaataaaaacagtaaaattttagcttatagaggcaaaaccaatcacaatgagataaacaca |
11440252 |
T |
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| Q |
216 |
gaacaccaattaatatgatctaattaacatgataaattctataaatattgttaagtacccagttaagaatatgcatgaaaggttctaactttgcatgttt |
315 |
Q |
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| T |
11440253 |
gaacaccaattaatatgatctaattaacatgataaattctataaataatgttaagtacccagttaagaatatgcatgaaagattctaactttgcatgttt |
11440352 |
T |
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| Q |
316 |
taagacaaaagaagaaattatnnnnnnntgcatgttaaggcaaatgatcacactagagagtagaaacctgcaagtgatgattgattgaagagaaactgtg |
415 |
Q |
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| T |
11440353 |
taagacaaaagaagaaattataaaaaaatgcatgttaaggcaaatgatcacactagagagtagaaacctgcaagtgatgattgattgaagagaaactgtg |
11440452 |
T |
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| Q |
416 |
tgctgctgaagatggtgatggtgagatggcttgagaattgcatttggctatagaagaaaacagagatctcaacctgcaaatcttcatagctatcttcttt |
515 |
Q |
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| T |
11440453 |
tgctgctgaagatggtgacggtgagatggcttgagaattgcatttggctatagaagaaaacagagatctcaacctgcaaatcttcatagctatcttcttt |
11440552 |
T |
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| Q |
516 |
ctgcacaattcttgagtttttcagtataatatgatgatgatgagttggtttgcataacta |
575 |
Q |
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| T |
11440553 |
ctgcacaattcttgagtttttcagtataagatgatgatgatgagttggtttgcattacta |
11440612 |
T |
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