View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8247_low_14 (Length: 205)

Name: NF8247_low_14
Description: NF8247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8247_low_14
NF8247_low_14
[»] chr5 (4 HSPs)
chr5 (14-200)||(12078061-12078247)
chr5 (109-167)||(25770523-25770579)
chr5 (109-140)||(27276600-27276631)
chr5 (111-166)||(35932891-35932949)
[»] chr1 (10 HSPs)
chr1 (25-140)||(23549551-23549666)
chr1 (27-145)||(23917119-23917237)
chr1 (38-167)||(24218564-24218696)
chr1 (109-166)||(2820094-2820153)
chr1 (109-166)||(16233944-16234002)
chr1 (111-167)||(29214994-29215052)
chr1 (102-140)||(25398696-25398734)
chr1 (73-140)||(27858009-27858078)
chr1 (111-166)||(12283590-12283646)
chr1 (111-167)||(20959857-20959912)
[»] chr8 (6 HSPs)
chr8 (39-166)||(15597972-15598097)
chr8 (42-139)||(17878949-17879046)
chr8 (74-140)||(23192668-23192735)
chr8 (102-140)||(27739097-27739135)
chr8 (111-167)||(16188461-16188517)
chr8 (109-145)||(25850886-25850922)
[»] chr4 (8 HSPs)
chr4 (31-140)||(10329094-10329203)
chr4 (27-138)||(32469226-32469337)
chr4 (34-140)||(5902301-5902412)
chr4 (101-166)||(24618887-24618954)
chr4 (109-140)||(13890058-13890089)
chr4 (111-161)||(19665567-19665617)
chr4 (50-135)||(15193027-15193112)
chr4 (38-136)||(13693025-13693125)
[»] chr7 (14 HSPs)
chr7 (38-140)||(9802306-9802408)
chr7 (39-166)||(3779456-3779584)
chr7 (102-140)||(12223305-12223343)
chr7 (103-140)||(16812264-16812301)
chr7 (102-166)||(19416433-19416500)
chr7 (32-140)||(23125184-23125292)
chr7 (73-140)||(5034521-5034590)
chr7 (102-140)||(11030269-11030307)
chr7 (34-124)||(12468516-12468606)
chr7 (32-82)||(19416621-19416671)
chr7 (38-139)||(9761914-9762014)
chr7 (100-140)||(16464247-16464288)
chr7 (111-166)||(1292247-1292305)
chr7 (37-141)||(20376663-20376767)
[»] chr2 (8 HSPs)
chr2 (47-140)||(14866582-14866675)
chr2 (32-140)||(27747223-27747331)
chr2 (34-140)||(16735740-16735846)
chr2 (53-139)||(25917938-25918025)
chr2 (38-140)||(40203117-40203219)
chr2 (111-167)||(23185178-23185234)
chr2 (111-167)||(23596441-23596497)
chr2 (74-167)||(22797603-22797700)
[»] scaffold1339 (1 HSPs)
scaffold1339 (27-140)||(1525-1638)
[»] chr6 (6 HSPs)
chr6 (23-140)||(24471173-24471290)
chr6 (51-140)||(31720382-31720471)
chr6 (109-166)||(15551235-15551294)
chr6 (109-168)||(24398046-24398107)
chr6 (108-169)||(25777490-25777553)
chr6 (117-166)||(17317394-17317441)
[»] chr3 (5 HSPs)
chr3 (32-140)||(12412383-12412491)
chr3 (23-135)||(16093703-16093815)
chr3 (111-166)||(22465383-22465439)
chr3 (111-166)||(29854607-29854665)
chr3 (118-167)||(47206868-47206919)
[»] scaffold0340 (1 HSPs)
scaffold0340 (38-139)||(17269-17370)
[»] scaffold0498 (1 HSPs)
scaffold0498 (38-145)||(4035-4143)


Alignment Details
Target: chr5 (Bit Score: 183; Significance: 3e-99; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 12078247 - 12078061
Alignment:
Q  14 atctctctctatatatcacttttatatccgctgcaattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12078247 atctctctctatatatcacttttatatccgctgcaattaactctgaacattgcttcaggttctgaactctattagaattttaacctttgacttagttaaa 12078148  T
Q  114 aagaagaaaaatctaacacaattcaacatccccctatgtttttctcaccttcaaggatttcaagaattcaaaagctatcttattggt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12078147 aagaagaaaaatctaacacaattcaacatccccctatgtttttctcaccttcaaggatttcaagaattcaaaagctatcttattggt 12078061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 25770523 - 25770579
Alignment:
Q  109 ttaaaaagaagaaaaatctaacacaattcaacatccccctatgtttttctcaccttcaa 167  Q
    |||||||||||||||| |||||||||||||||  ||| |||||||||||||||||||||    
T  25770523 ttaaaaagaagaaaaagctaacacaattcaac--ccctctatgtttttctcaccttcaa 25770579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 140
Target Start/End: Original strand, 27276600 - 27276631
Alignment:
Q  109 ttaaaaagaagaaaaatctaacacaattcaac 140  Q
    ||||||||||||||||||||||||||||||||    
T  27276600 ttaaaaagaagaaaaatctaacacaattcaac 27276631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 35932891 - 35932949
Alignment:
Q  111 aaaaagaagaaaaatctaacacaattcaacatccc---cctatgtttttctcaccttca 166  Q
    |||||||||||||| ||||||||||||||| ||||   | | |||||||||||||||||    
T  35932891 aaaaagaagaaaaagctaacacaattcaacctccccttcttgtgtttttctcaccttca 35932949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 6e-33; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 23549666 - 23549551
Alignment:
Q  25 tatatcacttttatatccgctgcaattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaaaaa 124  Q
    |||||| ||||||||||||||||| ||||||||||| |||||| ||||||||||||||||| ||||  | ||| || |||||||||||||||||||||||    
T  23549666 tatatctcttttatatccgctgcacttaactctgaacattgctccaggttctgaactctatcagaagctgaactttggacttagttaaaaagaagaaaaa 23549567  T
Q  125 tctaacacaattcaac 140  Q
     |||||||||||||||    
T  23549566 actaacacaattcaac 23549551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 145
Target Start/End: Complemental strand, 23917237 - 23917119
Alignment:
Q  27 tatcacttttatatccgctgcaattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaaaaatc 126  Q
    |||| |||||||||| || | | |||||||||||||| |||| |||||||||||||||| ||||| |  || || |||||| || |||| || ||||| |    
T  23917237 tatctcttttatatctgccgaatttaactctgaatatcgctttaggttctgaactctataagaatctggactttggacttaatttaaaacaataaaaagc 23917138  T
Q  127 taacacaattcaacatccc 145  Q
    |||||||||||||| ||||    
T  23917137 taacacaattcaacctccc 23917119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 167
Target Start/End: Complemental strand, 24218696 - 24218564
Alignment:
Q  38 tatccgctgcaattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagtt-aaaaagaagaaaaatctaacacaatt 136  Q
    |||| |||||| | |||| |||| ||||||||||  |||||||||||| ||| |||  || ||  |||||||| |||||||||||||| |||||||||||    
T  24218696 tatctgctgcattaaactgtgaacattgcttcagaatctgaactctatcagactttggactttgaacttagtttaaaaagaagaaaaaactaacacaatt 24218597  T
Q  137 caacatccc--cctatgtttttctcaccttcaa 167  Q
    ||||| |||  | | ||||||||||||| ||||    
T  24218596 caacaccccttcttgtgtttttctcaccatcaa 24218564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 2820094 - 2820153
Alignment:
Q  109 ttaaaaagaagaaaaatctaacacaattcaacatccc--cctatgtttttctcaccttca 166  Q
    |||||||||||||||| ||||||||||||||| ||||  | |||||||||||||||||||    
T  2820094 ttaaaaagaagaaaaaactaacacaattcaacctcccttcttatgtttttctcaccttca 2820153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 16233944 - 16234002
Alignment:
Q  109 ttaaaaagaagaaaaatctaacacaattcaacatcc-ccctatgtttttctcaccttca 166  Q
    |||||||||||||||| ||||||||||||||| |||  | |||||||||||||||||||    
T  16233944 ttaaaaagaagaaaaagctaacacaattcaacctccttcttatgtttttctcaccttca 16234002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 29215052 - 29214994
Alignment:
Q  111 aaaaagaagaaaaatctaacacaattcaacatccc--cctatgtttttctcaccttcaa 167  Q
    |||||||||||||| |||| ||||||||||| |||  | ||||||||||||||||||||    
T  29215052 aaaaagaagaaaaaactaatacaattcaacaccccttcttatgtttttctcaccttcaa 29214994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 25398734 - 25398696
Alignment:
Q  102 gacttagttaaaaagaagaaaaatctaacacaattcaac 140  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  25398734 gacttagttaaaaagaagaaaaaattaacacaattcaac 25398696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 27858078 - 27858009
Alignment:
Q  73 ttctgaactctattagaattttaacctttgacttagtt--aaaaagaagaaaaatctaacacaattcaac 140  Q
    ||||||||||||| ||| | | ||| || |||||||||  |||||||||||||| |||||||||||||||    
T  27858078 ttctgaactctatcagactctgaacattggacttagttttaaaaagaagaaaaagctaacacaattcaac 27858009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 12283646 - 12283590
Alignment:
Q  111 aaaaagaagaaaaatctaacacaattcaacatcc-ccctatgtttttctcaccttca 166  Q
    |||| ||||||||| |||||||||||||||||||  | | |||||||||||||||||    
T  12283646 aaaacgaagaaaaagctaacacaattcaacatccttcttgtgtttttctcaccttca 12283590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 20959857 - 20959912
Alignment:
Q  111 aaaaagaagaaaaatctaacacaattcaacatccccctatgtttttctcaccttcaa 167  Q
    |||| ||||||||| |||||||||||||||  |||| | ||||||||||||||||||    
T  20959857 aaaacgaagaaaaaactaacacaattcaac-cccccttgtgtttttctcaccttcaa 20959912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 39 - 166
Target Start/End: Complemental strand, 15598097 - 15597972
Alignment:
Q  39 atccgctgcaattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaaaaatctaacacaattca 138  Q
    |||| ||||| ||||||||||  ||||||||||||||||||||||||||||| || ||| ||| ||||| ||||||||||||||||  ||||||||| ||    
T  15598097 atccactgcacttaactctgatcattgcttcaggttctgaactctattagaagttgaacttttaacttatttaaaaagaagaaaaagttaacacaataca 15597998  T
Q  139 acatccccctatgtttttctcaccttca 166  Q
    ||  |||| | |||||||||||||||||    
T  15597997 ac--ccccttgtgtttttctcaccttca 15597972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 17879046 - 17878949
Alignment:
Q  42 cgctgcaattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaaaaatctaacacaattcaa 139  Q
    ||||||| |||||||||||||||| || || || |||||||||| ||||  | ||| ||  |||| ||| |||||||||||||  |||||||||||||    
T  17879046 cgctgcatttaactctgaatattgtttgagattttgaactctatcagaagctgaactttaaactttgtttaaaagaagaaaaagttaacacaattcaa 17878949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 23192668 - 23192735
Alignment:
Q  74 tctgaactctattagaattttaacctttgacttagtt-aaaaagaagaaaaatctaacacaattcaac 140  Q
    |||||||||||| ||| | | ||| || ||||||||| |||||||||||||| |||||||||||||||    
T  23192668 tctgaactctatcagactctaaacattggacttagtttaaaaagaagaaaaaactaacacaattcaac 23192735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 27739135 - 27739097
Alignment:
Q  102 gacttagttaaaaagaagaaaaatctaacacaattcaac 140  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  27739135 gacttagtttaaaagaagaaaaagctaacacaattcaac 27739097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 16188517 - 16188461
Alignment:
Q  111 aaaaagaagaaaaatctaacacaattcaacatccccctatgtttttctcaccttcaa 167  Q
    |||||||| ||||| |||||||||||||||  ||||   ||||||||||||||||||    
T  16188517 aaaaagaataaaaaactaacacaattcaaccccccctggtgtttttctcaccttcaa 16188461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 25850886 - 25850922
Alignment:
Q  109 ttaaaaagaagaaaaatctaacacaattcaacatccc 145  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  25850886 ttaaaaagaagaaaaagctaacacaattcaacctccc 25850922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 10329094 - 10329203
Alignment:
Q  31 acttttatatccgctgcaattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaaaaatctaac 130  Q
    ||||||||||  |||||||||||||  ||| ||||||||||  |||| ||||||| ||| |   |||||| ||||||||||||||||||||||| |||||    
T  10329094 acttttatatatgctgcaattaacttagaaaattgcttcagagtctggactctatcagagtcaaaaccttggacttagttaaaaagaagaaaaagctaac 10329193  T
Q  131 acaattcaac 140  Q
    ||||||||||    
T  10329194 acaattcaac 10329203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 32469226 - 32469337
Alignment:
Q  27 tatcacttttatatccgctgcaattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaaaaatc 126  Q
    |||| |||||||||||| |||| |||||| |||| ||||||||||||| |||||||||| |||| || ||| | ||||| | |||||||  ||||||| |    
T  32469226 tatctcttttatatccgttgcacttaactgtgaacattgcttcaggttttgaactctatcagaagttgaacttctgactcaattaaaaacgagaaaaaac 32469325  T
Q  127 taacacaattca 138  Q
    ||||||||||||    
T  32469326 taacacaattca 32469337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 5902301 - 5902412
Alignment:
Q  34 tttatatccgctgcaattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaa-----aaatcta 128  Q
    ||||||||||||||| |||||||| || |||| ||||| ||||||||||||| ||||  | ||| || ||||| ||||||||||||||     ||| |||    
T  5902301 tttatatccgctgcatttaactctaaacattgattcagattctgaactctatcagaagctgaactttggactttgttaaaaagaagaagaaaaaaaacta 5902400  T
Q  129 acacaattcaac 140  Q
    ||||||||||||    
T  5902401 acacaattcaac 5902412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 24618954 - 24618887
Alignment:
Q  101 tgacttagttaaaaagaagaaaaatctaacacaattcaacatccc--cctatgtttttctcaccttca 166  Q
    ||||||||||||||||||||| || |||||||||||||||  |||  | | |||||||||||||||||    
T  24618954 tgacttagttaaaaagaagaataagctaacacaattcaaccgcccttcttgtgtttttctcaccttca 24618887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 140
Target Start/End: Complemental strand, 13890089 - 13890058
Alignment:
Q  109 ttaaaaagaagaaaaatctaacacaattcaac 140  Q
    ||||||||||||||||||||||||||||||||    
T  13890089 ttaaaaagaagaaaaatctaacacaattcaac 13890058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 19665617 - 19665567
Alignment:
Q  111 aaaaagaagaaaaatctaacacaattcaacatccccctatgtttttctcac 161  Q
    |||| |||||||||||||||||||| |||| ||||| | ||||||||||||    
T  19665617 aaaacgaagaaaaatctaacacaatccaacctccccttgtgtttttctcac 19665567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 15193112 - 15193027
Alignment:
Q  50 ttaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaaaaatctaacacaat 135  Q
    ||||||||||| ||||||| ||||||| || ||||| ||||  | ||| |  ||||||||| |||| |||||||| ||||||||||    
T  15193112 ttaactctgaacattgctttaggttctaaaatctatcagaagctgaacttcagacttagtttaaaacaagaaaaagctaacacaat 15193027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 13693125 - 13693025
Alignment:
Q  38 tatccgctgcaatta-actctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagtt-aaaaagaagaaaaatctaacacaat 135  Q
    ||||| ||||||||| |||||||| |||| |  ||  ||||||||||||  || ||| ||| || ||||||||| ||||| |||||||||||||||||||    
T  13693125 tatccactgcaattagactctgaacattgttcaagaatctgaactctatcggactttgaactttggacttagtttaaaaataagaaaaatctaacacaat 13693026  T
Q  136 t 136  Q
    |    
T  13693025 t 13693025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 9802408 - 9802306
Alignment:
Q  38 tatccgctgcaattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaaaaatctaacacaattc 137  Q
    |||| |||||| |||||||||||   | ||||||  |||||||||||||||||| | ||| || || |||||| ||||||||||||||||||||||||||    
T  9802408 tatctgctgcacttaactctgaactctacttcagaatctgaactctattagaatctgaactttggaattagttcaaaagaagaaaaatctaacacaattc 9802309  T
Q  138 aac 140  Q
    |||    
T  9802308 aac 9802306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 3779456 - 3779584
Alignment:
Q  39 atccgctgcaattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaaaaatctaacacaattca 138  Q
    ||||| |||| |||||| |||| ||||||||||  |||||||||||  |||  || ||| || |||||||||||| | |||||||| |||||||||||||    
T  3779456 atccgttgcacttaactttgaacattgcttcagactctgaactctaccagaggttgaactttagacttagttaaataaaagaaaaagctaacacaattca 3779555  T
Q  139 acatcc-ccctatgtttttctcaccttca 166  Q
    ||  ||  | |||||||||||||||||||    
T  3779556 acccccttcttatgtttttctcaccttca 3779584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 12223305 - 12223343
Alignment:
Q  102 gacttagttaaaaagaagaaaaatctaacacaattcaac 140  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12223305 gacttagttaaaaagaagaaaaatctaacacaattcaac 12223343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 16812301 - 16812264
Alignment:
Q  103 acttagttaaaaagaagaaaaatctaacacaattcaac 140  Q
    |||||||||||||||||||||| |||||||||||||||    
T  16812301 acttagttaaaaagaagaaaaagctaacacaattcaac 16812264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 19416500 - 19416433
Alignment:
Q  102 gacttagttaaaaagaagaaaaatctaacacaattcaacatccc---cctatgtttttctcaccttca 166  Q
    |||||| |||||||||||||||| ||||||||||||| | ||||   | |||||||||||||||||||    
T  19416500 gacttatttaaaaagaagaaaaagctaacacaattcatcctccccttcttatgtttttctcaccttca 19416433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 23125292 - 23125184
Alignment:
Q  32 cttttatatccgctgcaattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaaaaatctaaca 131  Q
    ||||||||||  ||||| |  ||| |||| |||||| |||| |||||||| ||| | | | | ||| || ||||||||| ||||||||||||| ||||||    
T  23125292 cttttatatcttctgcattagactttgaacattgctccaggctctgaactttatcaaagtatgaactttggacttagtttaaaagaagaaaaagctaaca 23125193  T
Q  132 caattcaac 140  Q
    |||||||||    
T  23125192 caattcaac 23125184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 5034590 - 5034521
Alignment:
Q  73 ttctgaactctattagaattttaacctttgacttagtt--aaaaagaagaaaaatctaacacaattcaac 140  Q
    ||||||||||||| ||| | | ||| || |||||||||  ||||||||||||||| ||||||||||||||    
T  5034590 ttctgaactctatcagactctaaacattggacttagttttaaaaagaagaaaaatttaacacaattcaac 5034521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 11030269 - 11030307
Alignment:
Q  102 gacttagttaaaaagaagaaaaatctaacacaattcaac 140  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  11030269 gacttagttcaaaaggagaaaaatctaacacaattcaac 11030307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 124
Target Start/End: Complemental strand, 12468606 - 12468516
Alignment:
Q  34 tttatatccgctgcaattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaaaaa 124  Q
    ||||||||| ||||| ||||||||||| |||| ||||  || | ||| |||| | ||  |||||||| ||||| |||||||||||||||||    
T  12468606 tttatatccactgcatttaactctgaacattgattcaaattttaaacactatcaaaagcttaaccttggactttgttaaaaagaagaaaaa 12468516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 19416671 - 19416621
Alignment:
Q  32 cttttatatccgctgcaattaactctgaatattgcttcaggttctgaactc 82  Q
    |||||||| |||||||| ||||||||||| |||| ||||| ||||||||||    
T  19416671 cttttatacccgctgcacttaactctgaacattgtttcagattctgaactc 19416621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 9762014 - 9761914
Alignment:
Q  38 tatccgctgcaattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaaaaatctaacacaattc 137  Q
    |||| |||||| |||||||||||   | ||||||  | |||||||||| ||||| | ||| || ||||||||| |||||||| |||| ||||||||||||    
T  9762014 tatctgctgcacttaactctgaactctacttcagactttgaactctatcagaatctgaactttggacttagttcaaaagaag-aaaagctaacacaattc 9761916  T
Q  138 aa 139  Q
    ||    
T  9761915 aa 9761914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 16464288 - 16464247
Alignment:
Q  100 ttgacttagtt-aaaaagaagaaaaatctaacacaattcaac 140  Q
    ||||||||||| |||||||||||||| |||||||||||||||    
T  16464288 ttgacttagtttaaaaagaagaaaaaactaacacaattcaac 16464247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 1292305 - 1292247
Alignment:
Q  111 aaaaagaagaaaaatctaacacaattcaacatccc---cctatgtttttctcaccttca 166  Q
    |||||||||||||| ||||||||||||||| ||||   | | |||||||||||||||||    
T  1292305 aaaaagaagaaaaagctaacacaattcaacctccccttcttgtgtttttctcaccttca 1292247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 20376767 - 20376663
Alignment:
Q  37 atatccgctgcaattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaaaaatctaacacaatt 136  Q
    ||||| || ||| |||||||||||   ||||| ||||| ||||||| || ||||  | ||| || |||| ||||||| | |||||||| |||||||||||    
T  20376767 atatctgccgcacttaactctgaacgctgctttaggttttgaactccatcagaagctgaacattagactaagttaaagacaagaaaaaactaacacaatt 20376668  T
Q  137 caaca 141  Q
    |||||    
T  20376667 caaca 20376663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 14866675 - 14866582
Alignment:
Q  47 caattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaaaaatctaacacaattcaac 140  Q
    |||||||||||||| |||| ||||| ||||||| |||||  |||  | ||| || ||||||||||||||||||||||| |||||||||||||||    
T  14866675 caattaactctgaacattgtttcagattctgaaatctatcggaagctgaactttggacttagttaaaaagaagaaaaaactaacacaattcaac 14866582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 27747223 - 27747331
Alignment:
Q  32 cttttatatccgctgcaattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaaaaatctaaca 131  Q
    |||||||||  | |||| |||||| |||| ||| |||||||||||||||||| | ||||| | ||| || ||||| |||||||| ||||||||| |||||    
T  27747223 cttttatatttgttgcacttaactttgaacattacttcaggttctgaactctgtcagaatctgaacattggacttggttaaaaacaagaaaaatttaaca 27747322  T
Q  132 caattcaac 140  Q
    |||||||||    
T  27747323 caattcaac 27747331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 16735740 - 16735846
Alignment:
Q  34 tttatatccgctgcaattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaaaaatctaacaca 133  Q
    |||||| ||||| || ||| |||| || ||| |||||||||||||||||||| ||||  | ||  ||  |||||||||||||||||||||| ||||||||    
T  16735740 tttatacccgctacacttagctctaaacatttcttcaggttctgaactctatcagaagctgaaatttgaacttagttaaaaagaagaaaaaactaacaca 16735839  T
Q  134 attcaac 140  Q
    |||||||    
T  16735840 attcaac 16735846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 25918025 - 25917938
Alignment:
Q  53 actctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagtt-aaaaagaagaaaaatctaacacaattcaa 139  Q
    |||||||| ||||||||||| |||||||| ||| ||| ||| |||  | ||||||||| |||||||||||||| ||||||||||||||    
T  25918025 actctgaacattgcttcaggatctgaactttatcagactttgaactctagacttagtttaaaaagaagaaaaagctaacacaattcaa 25917938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 40203117 - 40203219
Alignment:
Q  38 tatccgctgcaattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaaaaatctaacacaattc 137  Q
    ||||||||||| || |||||||| |||| |||||  |||||||||||| ||| ||| |||  |  |||||||||||||||||||||| |||||| || ||    
T  40203117 tatccgctgcatttgactctgaacattgtttcagactctgaactctatcagattttgaactctgaacttagttaaaaagaagaaaaaactaacataactc 40203216  T
Q  138 aac 140  Q
    |||    
T  40203217 aac 40203219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 23185178 - 23185234
Alignment:
Q  111 aaaaagaagaaaaatctaacacaattcaacatccccctatgtttttctcaccttcaa 167  Q
    |||||||||||||| |||||||||||||||  |||| | ||||||||| ||||||||    
T  23185178 aaaaagaagaaaaagctaacacaattcaacccccccttgtgtttttcttaccttcaa 23185234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 23596441 - 23596497
Alignment:
Q  111 aaaaagaagaaaaatctaacacaattcaacatccccctatgtttttctcaccttcaa 167  Q
    |||||||||||||| |||||||||||||||  |||| | ||||||||| ||||||||    
T  23596441 aaaaagaagaaaaagctaacacaattcaacccccccttgtgtttttcttaccttcaa 23596497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 74 - 167
Target Start/End: Complemental strand, 22797700 - 22797603
Alignment:
Q  74 tctgaactctattagaattttaacctttgacttagtt--aaaaagaagaaaaatctaacacaattcaacatccc--cctatgtttttctcaccttcaa 167  Q
    |||||||||||| ||| | | ||| || |||||||||  |||||||||||||| |||||||||||||||  |||  | | ||||||||||||||||||    
T  22797700 tctgaactctatcagactatgaacattagacttagttttaaaaagaagaaaaaactaacacaattcaaccccccttcttgtgtttttctcaccttcaa 22797603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 1638 - 1525
Alignment:
Q  27 tatcacttttatatccgctgcaattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaaaaatc 126  Q
    |||| |||||||||| |||| | |||||| ||||||||||||||||||||||||||||| ||||  |  || || |||||||||  ||  || |||||||    
T  1638 tatctcttttatatctgctgaatttaactatgaatattgcttcaggttctgaactctatcagaagctggactttggacttagttttaagcaataaaaatc 1539  T
Q  127 taacacaattcaac 140  Q
    ||| ||||||||||    
T  1538 taaaacaattcaac 1525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 24471173 - 24471290
Alignment:
Q  23 tatatatcacttttatatccgctgcaattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaaa 122  Q
    |||||||| ||||||||||||| |||||| |||||||| |||| | |||  ||| || ||||| ||| | | ||| ||  ||||||||||||||||||||    
T  24471173 tatatatctcttttatatccgccgcaattgactctgaacattgttccagaatcttaattctatcagactctgaactttgaacttagttaaaaagaagaaa 24471272  T
Q  123 aatctaacacaattcaac 140  Q
    ||  ||||||||||||||    
T  24471273 aagttaacacaattcaac 24471290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 140
Target Start/End: Original strand, 31720382 - 31720471
Alignment:
Q  51 taactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaaaaatctaacacaattcaac 140  Q
    |||||||||| |||| ||||||||||||| ||||| | || || ||| || ||||| |||||||||||||||||  ||||||||||||||    
T  31720382 taactctgaaaattgattcaggttctgaattctatcaaaagttgaactttggacttggttaaaaagaagaaaaagttaacacaattcaac 31720471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 15551294 - 15551235
Alignment:
Q  109 ttaaaaagaagaaaaatctaacacaattcaacatccc--cctatgtttttctcaccttca 166  Q
    ||||||||||||||||||||||||||||||||  |||  | | |||||||||||||||||    
T  15551294 ttaaaaagaagaaaaatctaacacaattcaaccccccttcttgtgtttttctcaccttca 15551235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 24398107 - 24398046
Alignment:
Q  109 ttaaaaagaagaaaaatctaacacaattcaacatcccccta---tgtttttctcaccttcaag 168  Q
    |||||||||||||||||||||||||||||||| ||||| ||   |||||| ||||||||||||    
T  24398107 ttaaaaagaagaaaaatctaacacaattcaac-tccccttattgtgttttactcaccttcaag 24398046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 25777490 - 25777553
Alignment:
Q  108 gttaaaaagaagaaaaatctaacacaattcaacatccc--cctatgtttttctcaccttcaagg 169  Q
    |||||||| ||||||||||||||||||||||||||| |  | | |||||||||||| |||||||    
T  25777490 gttaaaaataagaaaaatctaacacaattcaacatctcttcttgtgtttttctcacattcaagg 25777553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 17317394 - 17317441
Alignment:
Q  117 aagaaaaatctaacacaattcaacatccccctatgtttttctcaccttca 166  Q
    |||||||| |||||||||||||||  |||||| |||||||||||||||||    
T  17317394 aagaaaaagctaacacaattcaac--ccccctgtgtttttctcaccttca 17317441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 12412383 - 12412491
Alignment:
Q  32 cttttatatccgctgcaattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaaaaatctaaca 131  Q
    ||||||||||||||||| |||| |||||| |||  ||||  ||||||||| ||| |||| ||  || || |||||||||||| | |||||||| ||||||    
T  12412383 cttttatatccgctgcacttaattctgaacattatttcaaattctgaactatatcagaagttggactttggacttagttaaatataagaaaaagctaaca 12412482  T
Q  132 caattcaac 140  Q
    |||||||||    
T  12412483 caattcaac 12412491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 16093815 - 16093703
Alignment:
Q  23 tatatatcacttttatatccgctgcaattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaaa 122  Q
    |||||||  ||||||||| ||||||| |||||| |||| ||||||||||||| |||||||||| | ||  | ||| ||  ||| | || |||||||||||    
T  16093815 tatatatatcttttatattcgctgcacttaactttgaacattgcttcaggttatgaactctatcataagctgaactttgtactaaatttaaaagaagaaa 16093716  T
Q  123 aatctaacacaat 135  Q
    || ||||||||||    
T  16093715 aagctaacacaat 16093703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 22465383 - 22465439
Alignment:
Q  111 aaaaagaagaaaaatctaacacaattcaacatccccc-tatgtttttctcaccttca 166  Q
    |||| ||||||||| |||||||||||||||  ||||| | |||||||||||||||||    
T  22465383 aaaaggaagaaaaagctaacacaattcaaccccccccttgtgtttttctcaccttca 22465439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 29854665 - 29854607
Alignment:
Q  111 aaaaagaagaaaaatctaacacaattcaacatccc---cctatgtttttctcaccttca 166  Q
    |||||||||||||| ||||||||||||||| ||||   | | |||||||||||||||||    
T  29854665 aaaaagaagaaaaagctaacacaattcaacctccccttcttgtgtttttctcaccttca 29854607  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 47206919 - 47206868
Alignment:
Q  118 agaaaaatctaacacaattcaacatccc--cctatgtttttctcaccttcaa 167  Q
    ||||||| ||||||||||||||| ||||  | ||||||||||||||||||||    
T  47206919 agaaaaagctaacacaattcaacctcccttcttatgtttttctcaccttcaa 47206868  T

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Target: scaffold0340 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 17370 - 17269
Alignment:
Q  38 tatccgctgcaattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaaaaatctaacacaattc 137  Q
    ||||||||||| || |||||||| || |||||| |||||||| ||||| ||||  | ||| || ||||||||| || | |||||||| ||||||||||||    
T  17370 tatccgctgcactttactctgaacatcgcttcaagttctgaaatctatcagaagctgaactttggacttagtttaagacaagaaaaagctaacacaattc 17271  T
Q  138 aa 139  Q
    ||    
T  17270 aa 17269  T

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Target: scaffold0498 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 145
Target Start/End: Original strand, 4035 - 4143
Alignment:
Q  38 tatccgctgcaattaactctgaatattgcttcaggttctgaactctattagaattttaacctttgacttagtt-aaaaagaagaaaaatctaacacaatt 136  Q
    ||||||||||| |  |||||||| |||||| | |  | |||||||||| ||| ||| ||||||  |||||||| ||||||||||||||   |||||||||    
T  4035 tatccgctgcattagactctgaacattgctcctgaatttgaactctatcagactttgaaccttgaacttagtttaaaaagaagaaaaagtcaacacaatt 4134  T
Q  137 caacatccc 145  Q
    |||| ||||    
T  4135 caacctccc 4143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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