View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8247_low_2 (Length: 540)
Name: NF8247_low_2
Description: NF8247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8247_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 483; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 21 - 531
Target Start/End: Original strand, 15806971 - 15807481
Alignment:
| Q |
21 |
tctgacgtgccggcttatgaagaggagctagtgaagatctgaagatgtctaaacatctcaattcgttggaattgcgacttgagacatctcctacaagtgt |
120 |
Q |
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| T |
15806971 |
tctgacgtgccggcttatgaagaggagctagtgaagatctgaagatgtctaaacatctcaattcgttggaattgcgacttgagacatctcctacaagtgt |
15807070 |
T |
|
| Q |
121 |
gcctcaagcaactaattaattatctttcctaagattgatgagtctgcaatttacaaaattgaaaggcatccaaattgaaaaacaaacaattaatattacc |
220 |
Q |
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| T |
15807071 |
gcctcaagcaactaattaattatctttcctaagattgatgagtctgcaatttacaacattgaaaggcatccaaattaaaaaacaaacaattaatattacc |
15807170 |
T |
|
| Q |
221 |
tggatttggcagaggagatggagatcctgtttgattttcgtagaaattataatcatcaatcttcaacccacaactaggacacaaaactacccatccaacc |
320 |
Q |
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||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15807171 |
tggatttggcaaaggagatggagatcctgtttgttgttcgtagaaattataatcatcaatcttcaacccacaactaggacacaaaactacccatccaacc |
15807270 |
T |
|
| Q |
321 |
tttgttccacaacactgaggaactctttccaacatagcctccaaacactgtcggcagccatccttactaagctcggtattacactgcaccaagccatacc |
420 |
Q |
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| T |
15807271 |
tttgttccacaacactgaggaactctttccaacatagcctccaaacactgtcggcagccatccttactaagctcggtattacactgcaccaagccatacc |
15807370 |
T |
|
| Q |
421 |
ttttgtcagtgtcactccaattgaactcatcagttgcccaattgagactcgctactgtagtcactttgcgtatcaaactcgtcatgctattctcagcttt |
520 |
Q |
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| T |
15807371 |
ttttgtcagtgtcactccaattgaactcatcagttgcccaattgagactcgctactgtagtcactttgcgtatcaaactcgtcatgctattctcagcttt |
15807470 |
T |
|
| Q |
521 |
cacaggttctg |
531 |
Q |
| |
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| || |||||| |
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| T |
15807471 |
cccaagttctg |
15807481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 212 - 531
Target Start/End: Original strand, 15793744 - 15794063
Alignment:
| Q |
212 |
aatattacctggatttggcagaggagatggagatcctgtttgattttcgtagaaattataatcatcaatcttcaacccacaactaggacacaaaactacc |
311 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||| | | ||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| |
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| T |
15793744 |
aatattacctggatttggcaaaggagaaggagatcctgtttgttgtccgtagaaattataatcatcaatcttcatcccacaactaggagacacaactacc |
15793843 |
T |
|
| Q |
312 |
catccaacctttgttccacaacactgaggaactctttccaacatagcctccaaacactgtcggcagccatccttactaagctcggtattacactgcacca |
411 |
Q |
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| T |
15793844 |
catccaacctttgttccacagcactgtggaactctatccaacatagcctccaaacactgtctacacccatccttactaaggtctctattacactgcacca |
15793943 |
T |
|
| Q |
412 |
agccataccttttgtcagtgtcactccaattgaactcatcagttgcccaattgagactcgctactgtagtcactttgcgtatcaaactcgtcatgctatt |
511 |
Q |
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| T |
15793944 |
taccataccttttctcagtgtcactccaattgaactcacccattgcccaattgggattgccttctgtcgtcacttttcgtatcaaactcatcatgttatt |
15794043 |
T |
|
| Q |
512 |
ctcagctttcacaggttctg |
531 |
Q |
| |
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||||| |||| || |||||| |
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| T |
15794044 |
ctcagatttcgcaagttctg |
15794063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 209 - 531
Target Start/End: Original strand, 15801543 - 15801862
Alignment:
| Q |
209 |
attaatattacctggatttggcagaggagatggagatcctgtttgattttcgtagaaattataatcatcaatcttcaacccacaactaggacacaaaact |
308 |
Q |
| |
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|||||| ||||||||||| |||| ||||| ||||| ||||||| || |||||| ||||||||||||| || | |||||| |||||| ||| ||| |
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| T |
15801543 |
attaatgttacctggattcggcataggag---gagattctgtttgcagttggtagaacatataatcatcaattttaagcccacagctaggagacataacg |
15801639 |
T |
|
| Q |
309 |
acccatccaacctttgttccacaacactgaggaactctttccaacatagcctccaaacactgtcggcagccatccttactaagctcggtattacactgca |
408 |
Q |
| |
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|||| | ||||||||||||||||||||||||||| |||||||||||||| | ||||| | ||| |||||||||||||| || |||||||||||| |
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| T |
15801640 |
gcccacgctacctttgttccacaacactgaggaactaaatccaacatagcctctagacactctttgcacccatccttactaaggtctctattacactgca |
15801739 |
T |
|
| Q |
409 |
ccaagccataccttttgtcagtgtcactccaattgaactcatcagttgcccaattgagactcgctactgtagtcactttgcgtatcaaactcgtcatgct |
508 |
Q |
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|||| ||||||||||| || |||||||||||| |||||||| | ||||||||| | |||| | | |||||||||||||||||||||||||| ||||| | |
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| T |
15801740 |
ccaaaccataccttttctcggtgtcactccaaatgaactcacccgttgcccaaacgggactggattctgtagtcactttgcgtatcaaactcatcatgtt |
15801839 |
T |
|
| Q |
509 |
attctcagctttcacaggttctg |
531 |
Q |
| |
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||||||||||||| || |||||| |
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| T |
15801840 |
attctcagctttcccaagttctg |
15801862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 260 - 448
Target Start/End: Original strand, 15815071 - 15815259
Alignment:
| Q |
260 |
gtagaaattataatcatcaatcttcaacccacaactaggacacaaaactacccatccaacctttgttccacaacactgaggaactctttccaacatagcc |
359 |
Q |
| |
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|||||| |||| ||||||||||| || |||||||||||| ||| ||| ||||| ||||||||||||||||| ||||||||| | |||||||||| |
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| T |
15815071 |
gtagaacttattatcatcaatctccattccacaactaggagacaccactgcccattttacctttgttccacaacattgaggaactttatccaacatagtt |
15815170 |
T |
|
| Q |
360 |
tccaaacactgtcggcagccatccttactaagctcggtattacactgcaccaagccataccttttgtcagtgtcactccaattgaactc |
448 |
Q |
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|||||||| | || ||| || || || |||| || |||||||||||||| | ||||||||||| || ||||||||||||| |||||| |
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| T |
15815171 |
tccaaacaatatctgcacccgtcttttgtaaggtcactattacactgcacccaaccataccttttctcggtgtcactccaatcgaactc |
15815259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 305 - 386
Target Start/End: Original strand, 15699881 - 15699962
Alignment:
| Q |
305 |
aactacccatccaacctttgttccacaacactgaggaactctttccaacatagcctccaaacactgtcggcagccatcctta |
386 |
Q |
| |
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|||| ||||| | ||||||||||||||||||| |||||| ||||||| ||||||||||||||||| ||| || |||||| |
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| T |
15699881 |
aacttcccatgctacctttgttccacaacacttgggaactaagtccaacacagcctccaaacactgtctgcacccttcctta |
15699962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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