View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8247_low_3 (Length: 444)

Name: NF8247_low_3
Description: NF8247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8247_low_3
NF8247_low_3
[»] chr4 (27 HSPs)
chr4 (1-426)||(52645435-52645876)
chr4 (1-49)||(4191682-4191730)
chr4 (38-138)||(23819068-23819169)
chr4 (8-140)||(24929443-24929575)
chr4 (1-125)||(45128313-45128437)
chr4 (1-149)||(54325016-54325164)
chr4 (58-129)||(11264301-11264372)
chr4 (1-121)||(49219082-49219202)
chr4 (3-138)||(2996518-2996653)
chr4 (259-295)||(9316487-9316523)
chr4 (3-74)||(24160549-24160620)
chr4 (71-139)||(29467613-29467681)
chr4 (3-149)||(24370930-24371079)
chr4 (12-129)||(30207570-30207686)
chr4 (6-49)||(41097323-41097366)
chr4 (1-31)||(6364092-6364122)
chr4 (1-35)||(34213687-34213721)
chr4 (1-31)||(34368820-34368850)
chr4 (1-31)||(47970261-47970291)
chr4 (1-31)||(51044556-51044586)
chr4 (85-126)||(25487567-25487608)
chr4 (94-139)||(41097245-41097290)
chr4 (3-47)||(21952520-21952563)
chr4 (87-139)||(22684510-22684562)
chr4 (2-30)||(36048743-36048771)
chr4 (261-297)||(46053581-46053617)
chr4 (4-52)||(50745946-50745993)
[»] chr7 (30 HSPs)
chr7 (1-145)||(3610723-3610867)
chr7 (1-145)||(28165034-28165178)
chr7 (55-138)||(39771758-39771841)
chr7 (8-125)||(15075088-15075206)
chr7 (87-145)||(27626106-27626164)
chr7 (87-148)||(941569-941630)
chr7 (88-140)||(39551536-39551588)
chr7 (97-144)||(39539765-39539812)
chr7 (1-74)||(5006563-5006636)
chr7 (210-244)||(27389308-27389342)
chr7 (1-31)||(28178912-28178942)
chr7 (1-31)||(28702703-28702733)
chr7 (1-31)||(33894566-33894596)
chr7 (1-31)||(35809001-35809031)
chr7 (1-31)||(43152999-43153029)
chr7 (55-129)||(44151479-44151553)
chr7 (67-145)||(45859510-45859587)
chr7 (1-30)||(2223091-2223120)
chr7 (1-30)||(2894760-2894789)
chr7 (67-140)||(3468623-3468696)
chr7 (96-145)||(29290371-29290420)
chr7 (2-31)||(42656459-42656488)
chr7 (96-129)||(45078316-45078349)
chr7 (1-49)||(1423089-1423136)
chr7 (1-33)||(5276432-5276464)
chr7 (3-31)||(22388001-22388029)
chr7 (2-30)||(23214831-23214859)
chr7 (3-31)||(27708884-27708912)
chr7 (104-144)||(28076600-28076640)
chr7 (259-295)||(28702640-28702676)
[»] chr3 (30 HSPs)
chr3 (2-125)||(36646385-36646508)
chr3 (65-140)||(30923886-30923961)
chr3 (11-140)||(43115010-43115138)
chr3 (87-139)||(20192595-20192647)
chr3 (2-129)||(38462225-38462352)
chr3 (77-139)||(31010421-31010483)
chr3 (1-70)||(40122811-40122879)
chr3 (67-128)||(53848063-53848124)
chr3 (65-145)||(37273141-37273221)
chr3 (2-49)||(49586996-49587042)
chr3 (1-31)||(905067-905097)
chr3 (1-31)||(1395614-1395644)
chr3 (1-31)||(2128348-2128378)
chr3 (68-138)||(2152168-2152238)
chr3 (97-147)||(5391918-5391968)
chr3 (1-118)||(27792815-27792932)
chr3 (1-31)||(42809244-42809274)
chr3 (65-139)||(54180769-54180843)
chr3 (100-145)||(1217783-1217828)
chr3 (64-145)||(1809983-1810064)
chr3 (64-129)||(48048981-48049046)
chr3 (97-138)||(53762384-53762425)
chr3 (87-139)||(3044248-3044300)
chr3 (97-129)||(13804816-13804848)
chr3 (3-31)||(15304444-15304472)
chr3 (259-295)||(20874451-20874487)
chr3 (117-149)||(31337381-31337413)
chr3 (1-49)||(41028931-41028978)
chr3 (97-149)||(41724251-41724303)
chr3 (2-85)||(48323765-48323848)
[»] chr2 (32 HSPs)
chr2 (1-115)||(28933767-28933881)
chr2 (2-129)||(1939331-1939458)
chr2 (5-145)||(9878665-9878805)
chr2 (3-139)||(32821754-32821890)
chr2 (1-129)||(33942094-33942221)
chr2 (10-129)||(10285813-10285931)
chr2 (87-139)||(34652025-34652077)
chr2 (1-83)||(10143115-10143197)
chr2 (77-153)||(1647255-1647331)
chr2 (1-33)||(41033045-41033077)
chr2 (3-145)||(1742015-1742157)
chr2 (1-31)||(5133715-5133745)
chr2 (210-244)||(9478224-9478258)
chr2 (262-300)||(11393520-11393558)
chr2 (262-300)||(11410181-11410219)
chr2 (1-31)||(38239648-38239678)
chr2 (2-31)||(656874-656903)
chr2 (4-49)||(14209223-14209267)
chr2 (2-31)||(17952798-17952827)
chr2 (2-31)||(31461382-31461411)
chr2 (2-31)||(32098405-32098434)
chr2 (1-30)||(40837526-40837555)
chr2 (87-144)||(43985238-43985295)
chr2 (65-129)||(750358-750422)
chr2 (99-147)||(787373-787421)
chr2 (1-29)||(9477908-9477936)
chr2 (77-129)||(10198479-10198531)
chr2 (210-242)||(13864577-13864609)
chr2 (2-30)||(33087696-33087724)
chr2 (113-145)||(41851147-41851179)
chr2 (259-291)||(43635251-43635283)
chr2 (214-246)||(43808499-43808531)
[»] chr5 (24 HSPs)
chr5 (6-138)||(14295454-14295586)
chr5 (1-48)||(28350907-28350954)
chr5 (1-128)||(34690817-34690943)
chr5 (64-138)||(40205064-40205138)
chr5 (1-37)||(1773516-1773552)
chr5 (1-124)||(16889678-16889801)
chr5 (1-139)||(18704025-18704162)
chr5 (97-145)||(41957434-41957482)
chr5 (87-162)||(14331396-14331470)
chr5 (87-142)||(17369425-17369480)
chr5 (6-140)||(36542270-36542404)
chr5 (1-31)||(7096224-7096254)
chr5 (87-145)||(11457128-11457185)
chr5 (1-31)||(12407758-12407788)
chr5 (1-31)||(12460097-12460127)
chr5 (1-31)||(13224372-13224402)
chr5 (87-145)||(19369342-19369400)
chr5 (9-129)||(37690635-37690756)
chr5 (1-31)||(37968834-37968864)
chr5 (2-31)||(5563648-5563677)
chr5 (88-137)||(10303826-10303875)
chr5 (2-31)||(11714963-11714992)
chr5 (97-138)||(21768187-21768228)
chr5 (2-30)||(43215323-43215351)
[»] chr1 (34 HSPs)
chr1 (1-129)||(36151504-36151632)
chr1 (87-144)||(26184777-26184834)
chr1 (2-147)||(28689433-28689580)
chr1 (64-147)||(35925696-35925779)
chr1 (90-140)||(6231804-6231854)
chr1 (1-47)||(23895279-23895324)
chr1 (55-129)||(30257680-30257754)
chr1 (55-140)||(11695858-11695943)
chr1 (88-145)||(34380475-34380532)
chr1 (5-127)||(30259487-30259610)
chr1 (77-145)||(32515424-32515492)
chr1 (55-139)||(39347956-39348040)
chr1 (77-140)||(27140497-27140560)
chr1 (55-134)||(27887112-27887191)
chr1 (97-140)||(29723528-29723571)
chr1 (259-298)||(29794073-29794112)
chr1 (15-139)||(30371105-30371229)
chr1 (65-147)||(37811859-37811941)
chr1 (1-31)||(50319235-50319265)
chr1 (9-129)||(4622044-4622164)
chr1 (1-30)||(13037807-13037836)
chr1 (89-182)||(15581285-15581378)
chr1 (64-137)||(27963361-27963434)
chr1 (259-300)||(29665898-29665939)
chr1 (87-156)||(33108594-33108663)
chr1 (65-138)||(39270415-39270488)
chr1 (1-29)||(172676-172704)
chr1 (39-138)||(12564864-12564964)
chr1 (57-121)||(31294528-31294592)
chr1 (55-147)||(37842336-37842428)
chr1 (1-29)||(38578470-38578498)
chr1 (87-135)||(44031992-44032040)
chr1 (91-147)||(45394148-45394204)
chr1 (1-29)||(45999387-45999415)
[»] chr6 (25 HSPs)
chr6 (81-140)||(3738092-3738151)
chr6 (87-140)||(9667973-9668026)
chr6 (55-138)||(283092-283175)
chr6 (65-140)||(4246417-4246492)
chr6 (1-47)||(4247717-4247761)
chr6 (1-126)||(20671868-20671992)
chr6 (88-138)||(31583709-31583759)
chr6 (4-100)||(1402942-1403038)
chr6 (2-129)||(281847-281974)
chr6 (87-175)||(2455839-2455927)
chr6 (55-147)||(31624087-31624179)
chr6 (65-140)||(6647394-6647469)
chr6 (57-139)||(2112199-2112281)
chr6 (87-189)||(2732186-2732288)
chr6 (87-145)||(7148695-7148753)
chr6 (3-49)||(24782004-24782049)
chr6 (1-31)||(31461621-31461651)
chr6 (1-31)||(31624201-31624231)
chr6 (91-145)||(34939777-34939831)
chr6 (87-140)||(2034434-2034487)
chr6 (1-30)||(33500579-33500608)
chr6 (1-49)||(323754-323801)
chr6 (3-74)||(4006659-4006730)
chr6 (87-139)||(8420186-8420238)
chr6 (2-30)||(33925697-33925725)
[»] chr8 (15 HSPs)
chr8 (87-145)||(5088881-5088939)
chr8 (55-140)||(39551197-39551282)
chr8 (92-152)||(3254259-3254319)
chr8 (87-139)||(12361221-12361273)
chr8 (1-49)||(27465316-27465363)
chr8 (65-147)||(10383892-10383974)
chr8 (91-129)||(14949899-14949937)
chr8 (67-129)||(25869265-25869327)
chr8 (1-31)||(26215439-26215469)
chr8 (1-74)||(42597344-42597417)
chr8 (259-300)||(7008507-7008548)
chr8 (1-101)||(30627929-30628029)
chr8 (90-138)||(9835890-9835938)
chr8 (2-30)||(33697050-33697078)
chr8 (2-85)||(38561670-38561753)
[»] scaffold0003 (1 HSPs)
scaffold0003 (64-145)||(306332-306413)
[»] scaffold0590 (1 HSPs)
scaffold0590 (1-31)||(1171-1201)
[»] scaffold0275 (1 HSPs)
scaffold0275 (1-31)||(2774-2804)
[»] scaffold0072 (1 HSPs)
scaffold0072 (88-138)||(4989-5039)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-145)||(27519-27663)
[»] scaffold0004 (1 HSPs)
scaffold0004 (91-144)||(98624-98677)


Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 52645876 - 52645435
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgtagctataacttgttttcatagactatcatagggagcttatagaaat 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52645876 gtataagctatttctataacaaaagataaaa-tcaattcaaactgtttttatgtagctataacttgttttcatagactatcatagggagcttatagaaat 52645778  T
Q  101 aagttgacaacagcttatggacatgtcattagctgtttccgtaagtttttctatacaatctctcaactgtttatgtaagtaggcaagcttaaagaggtca 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52645777 aagttgacaacagcttatggacatgccattagctgtttccgtaagtttttctatacaatctctcaactgtttatgtaagtaggcaagcttaaagaggtca 52645678  T
Q  201 atccaaaca---------atagaaatagctcatacataaacacttatatgatacgtttttaattaagttatgctattagtgcttaattaagctgtttatc 291  Q
    |||||||||         | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  52645677 atccaaacaacttttgttacagaaatagctcatacataaacacttatatgatacgtttttaattaagttatgctattagtgcttaattaagttgtttatc 52645578  T
Q  292 caaaaaaggacctaacatgcaatgcttttattt--------ctgttttaatttatcgctgtataggaaaaaataaactatttaagtaaaatcttacactt 383  Q
    |||| |||| |||||||||||||||||||||||        || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52645577 caaacaaggccctaacatgcaatgcttttatttctaacatgctcttttaatttatcgctgtataggaaaaaataaactatttaagtaaaatcttacactt 52645478  T
Q  384 gaaaatctgttgttttggatatattgaaaatttccttaggtct 426  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  52645477 gaaaatctgttgttttggatatattgaaaatttccttaggtct 52645435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4191682 - 4191730
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttt 49  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||    
T  4191682 gtataagctatttctataacaaaagataaaaataaagtcaaactgtttt 4191730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 23819068 - 23819169
Alignment:
Q  38 tcaaactgtttttatgta-gctataacttgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgt 136  Q
    |||||||||||| || || | |||||| ||||||||||  ||||| |   ||||||||||||||||| ||| |||| |||||||||||||||| ||||||    
T  23819068 tcaaactgttttcatataagttataacatgttttcataagctatcttgaagagcttatagaaataagatgaaaacaacttatggacatgtcataagctgt 23819167  T
Q  137 tt 138  Q
    ||    
T  23819168 tt 23819169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 24929443 - 24929575
Alignment:
Q  8 ctatttctataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcatagactatcatagggagcttatagaaataagttg 106  Q
    |||||||||||||||||||||||| | || || ||||||||| ||  | ||||||| ||||||||||| ||| |  ||| |||||||| |||||||| ||    
T  24929443 ctatttctataacaaaagataaaa-taaagtctaactgttttcataaaagctataagttgttttcataaactctactagagagcttatggaaataagctg 24929541  T
Q  107 acaacagcttatggacatgtcattagctgtttcc 140  Q
    | ||||  ||||| ||||| ||| ||||||||||    
T  24929542 aaaacaatttatgaacatgccataagctgtttcc 24929575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 45128437 - 45128313
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcatagactatcatagggagcttatagaaa 99  Q
    |||||| |||||||||||||||||||||||| |||| ||||| | || | || || ||||||| ||||||||||| ||| || ||   ||||||| ||||    
T  45128437 gtataaactatttctataacaaaagataaaa-tcaaatcaaattattctcatataagctataaattgttttcataaactgtcctataaagcttatggaaa 45128339  T
Q  100 taagttgacaacagcttatggacatg 125  Q
    |||| ||| ||||||| |||||||||    
T  45128338 taagctgaaaacagctcatggacatg 45128313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 54325164 - 54325016
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcatagactatcatagggagcttatagaaa 99  Q
    |||||| |||||||||| ||||||||||||| | || |||||||||||| || || |||||||  | |||||| |  ||||||| | ||| |||| || |    
T  54325164 gtataaactatttctattacaaaagataaaa-taaagtcaaactgttttcatataagctataagctattttcaaaagctatcatggagagtttatggaga 54325066  T
Q  100 taagttgacaacagcttatggacatgtcattagctgtttccgtaagtttt 149  Q
    |||  ||| |||||||||||||||| |||| | || ||||||||||||||    
T  54325065 taaactgaaaacagcttatggacatatcataaactatttccgtaagtttt 54325016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 11264301 - 11264372
Alignment:
Q  58 tataacttgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcat 129  Q
    ||||| |||||||||||  | ||| ||| |||||||| |||||||||||| ||||| |||||||||||||||    
T  11264301 tataagttgttttcataagccatcctagagagcttatggaaataagttgaaaacagtttatggacatgtcat 11264372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 49219082 - 49219202
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcatagactatcatagggagcttatagaaa 99  Q
    ||||||| |||||||||||||||| |||||| | || ||||| | |||| || || ||||||| ||||||||||| |||||| ||  ||| |||| ||||    
T  49219082 gtataagttatttctataacaaaatataaaa-taaagtcaaattattttcatataagctataagttgttttcataaactatcttaaagagattatggaaa 49219180  T
Q  100 taagttgacaacagcttatgga 121  Q
    |||| ||| |||| ||||||||    
T  49219181 taagctgaaaacaacttatgga 49219202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 138
Target Start/End: Original strand, 2996518 - 2996653
Alignment:
Q  3 ataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcatagactatcatagggagcttatagaaata 101  Q
    |||||||| ||| |||||| |||||||||  || | |||| ||||||||| || | ||||| |||||||||||  ||||| | | |||| |||  |||||    
T  2996518 ataagctacttcgataacataagataaaatacagt-caaattgtttttatataagttataagttgttttcataagctatcttggagagcgtatgaaaata 2996616  T
Q  102 agttgacaacagcttatggacatgtcattagctgttt 138  Q
    |||||| || |||||||||||||||||| || |||||    
T  2996617 agttgaaaaaagcttatggacatgtcataagttgttt 2996653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 9316523 - 9316487
Alignment:
Q  259 ttatgctattagtgcttaattaagctgtttatccaaa 295  Q
    ||||||||| |||||||||||||||||||||||||||    
T  9316523 ttatgctataagtgcttaattaagctgtttatccaaa 9316487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 24160620 - 24160549
Alignment:
Q  3 ataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgt-agctataacttgttttcata 74  Q
    ||||||| ||||||||||||||||| || || |||||||||| |||| |||| |||||||| |||||||||||    
T  24160620 ataagctttttctataacaaaagat-aatataaattcaaactattttcatgtaagctataagttgttttcata 24160549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 29467681 - 29467613
Alignment:
Q  71 catagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttc 139  Q
    |||| |||||| ||| ||| |||| |||||||| ||| ||||||||||||||||||||| ||| |||||    
T  29467681 catacactatcctagagagtttatggaaataagctgaaaacagcttatggacatgtcataagccgtttc 29467613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 149
Target Start/End: Complemental strand, 24371079 - 24370930
Alignment:
Q  3 ataagctatttctataa-caaaagataaaaatcaattcaaactgttttta-tgtagctataacttgttttcatagactatcatagggagcttatagaaat 100  Q
    ||||||||||||||||| |||||||| ||||| |||||||| || |||||    |||||||| |||||||||||  ||||| ||   || ||||||||||    
T  24371079 ataagctatttctataaccaaaagat-aaaataaattcaaattgcttttacaaaagctataagttgttttcataagctatcctaaatagtttatagaaat 24370981  T
Q  101 aagttgacaacagcttatg--gacatgtcattagctgtttccgtaagtttt 149  Q
    ||| ||| ||| |||||||   ||||||||| || ||||||| ||||||||    
T  24370980 aagctgaaaacggcttatgtatacatgtcataagttgtttccataagtttt 24370930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 30207686 - 30207570
Alignment:
Q  12 ttctataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcatagactatcatagggagcttatagaaataagttgacaa 110  Q
    ||||||||||||| ||||||   || |||||||||||| || || ||||||| |||||||||||  ||| | ||| ||| |||| |||||||| ||| ||    
T  30207686 ttctataacaaaaaataaaat--aaatcaaactgttttcatataagctataagttgttttcataagctaccttagagagattatggaaataagctgaaaa 30207589  T
Q  111 cagcttatggacatgtcat 129  Q
    |||||||  ||||||||||    
T  30207588 cagcttacagacatgtcat 30207570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 41097366 - 41097323
Alignment:
Q  6 agctatttctataacaaaagataaaaatcaattcaaactgtttt 49  Q
    |||| ||||||||||||||||||||||| || ||||||||||||    
T  41097366 agctgtttctataacaaaagataaaaattaagtcaaactgtttt 41097323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 6364092 - 6364122
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  6364092 gtataagctatttctataacaaaagataaaa 6364122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 34213721 - 34213687
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatca 35  Q
    |||||||||||||||||| ||||||||||||||||    
T  34213721 gtataagctatttctatagcaaaagataaaaatca 34213687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 34368820 - 34368850
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  34368820 gtataagctatttctataacaaaagataaaa 34368850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 47970261 - 47970291
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  47970261 gtataagctatttctataacaaaagataaaa 47970291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 51044586 - 51044556
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  51044586 gtataagctatttctataacaaaagataaaa 51044556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 25487608 - 25487567
Alignment:
Q  85 gggagcttatagaaataagttgacaacagcttatggacatgt 126  Q
    |||| ||||| |||||||||||| ||||||||||||||||||    
T  25487608 gggaacttatggaaataagttgataacagcttatggacatgt 25487567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 41097290 - 41097245
Alignment:
Q  94 tagaaataagttgacaacagcttatggacatgtcattagctgtttc 139  Q
    |||| ||||||||| || ||||||||||||||||||||| ||||||    
T  41097290 tagagataagttgaaaatagcttatggacatgtcattagttgtttc 41097245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 21952520 - 21952563
Alignment:
Q  3 ataagctatttctataacaaaagataaaaatcaattcaaactgtt 47  Q
    ||||||||||||||||||||||| | |||||||| ||||||||||    
T  21952520 ataagctatttctataacaaaaggt-aaaatcaagtcaaactgtt 21952563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 22684562 - 22684510
Alignment:
Q  87 gagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttc 139  Q
    ||||||| ||||||||| ||| |||||||||||||||| |||| |||| ||||    
T  22684562 gagcttaaagaaataagctgaaaacagcttatggacatatcataagctatttc 22684510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 36048743 - 36048771
Alignment:
Q  2 tataagctatttctataacaaaagataaa 30  Q
    |||||||||||||||||||||||||||||    
T  36048743 tataagctatttctataacaaaagataaa 36048771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 46053617 - 46053581
Alignment:
Q  261 atgctattagtgcttaattaagctgtttatccaaaaa 297  Q
    ||||||| || ||||||||||||||||||||||||||    
T  46053617 atgctataagcgcttaattaagctgtttatccaaaaa 46053581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 50745946 - 50745993
Alignment:
Q  4 taagctatttctataacaaaagataaaaatcaattcaaactgtttttat 52  Q
    |||||||||| ||||||||||||| ||||| || |||||||||||||||    
T  50745946 taagctatttttataacaaaagat-aaaataaaatcaaactgtttttat 50745993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 3610867 - 3610723
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcatagactatcatagggagcttatagaaa 99  Q
    |||||||||||||||| |||||||||||||| | ||  |||||||||||  | || ||||||| |||||||| || |||||| ||| |||||||||||||    
T  3610867 gtataagctatttctacaacaaaagataaaa-tgaaggcaaactgttttggtataagctataagttgttttcgtaaactatcctagagagcttatagaaa 3610769  T
Q  100 taagttgacaacagcttatggacatgtcattagctgtttccgtaag 145  Q
    |||| ||| ||  |||||||||||||||||||||||||||| ||||    
T  3610768 taagctgaaaaaggcttatggacatgtcattagctgtttccataag 3610723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 28165034 - 28165178
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcatagactatcatagggagcttatagaaa 99  Q
    ||||||| | ||||||||||||||||||||| | || ||||| |||||| || || |||||||  ||| || |||  ||||||| | |||||||| ||||    
T  28165034 gtataagttctttctataacaaaagataaaa-tgaagtcaaattgttttaatataagctataaactgtctttataagctatcatggagagcttatggaaa 28165132  T
Q  100 taagttgacaacagcttatggacatgtcattagctgtttccgtaag 145  Q
    |||||||| ||||||||||| ||| ||| | |||||||||| ||||    
T  28165133 taagttgaaaacagcttatgaacaggtcttgagctgtttccataag 28165178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 138
Target Start/End: Original strand, 39771758 - 39771841
Alignment:
Q  55 agctataacttgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgttt 138  Q
    |||||||| ||||||||||||  |||||||| | ||| || |||||||||||| |||||||||||||||| |||| || |||||    
T  39771758 agctataagttgttttcataggttatcatagagtgctaatggaaataagttgaaaacagcttatggacatatcataagttgttt 39771841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 15075206 - 15075088
Alignment:
Q  8 ctatttctataacaaaagataaaaatcaattcaaactgtttttatgt-agctataacttgttttcatagactatcatagggagcttatagaaataagttg 106  Q
    |||||||||||||||||||||||| | |||  ||||| ||||||| | || ||||| || |||||||| |||| | ||| |||||||| |||||||| |     
T  15075206 ctatttctataacaaaagataaaatttaatcaaaactatttttatataagttataagttattttcataaactaccttagagagcttatggaaataagcta 15075107  T
Q  107 acaacagcttatggacatg 125  Q
    | ||||||||||| |||||    
T  15075106 aaaacagcttatgtacatg 15075088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 27626164 - 27626106
Alignment:
Q  87 gagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaag 145  Q
    |||||||| |||||||||| | ||||| ||||||||||||||| |||||||||| ||||    
T  27626164 gagcttatggaaataagtttaaaacagtttatggacatgtcataagctgtttccataag 27626106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 941569 - 941630
Alignment:
Q  87 gagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaagttt 148  Q
    |||||||||||||||| || | ||| ||||||||||||||||| || ||||||| |||||||    
T  941569 gagcttatagaaataaatttaaaactgcttatggacatgtcataagttgtttccataagttt 941630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 39551588 - 39551536
Alignment:
Q  88 agcttatagaaataagttgacaacagcttatggacatgtcattagctgtttcc 140  Q
    ||||||| |||||||| |||||||| |||||||||||||||| || |||||||    
T  39551588 agcttatggaaataagctgacaacaccttatggacatgtcataagttgtttcc 39551536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 39539812 - 39539765
Alignment:
Q  97 aaataagttgacaacagcttatggacatgtcattagctgtttccgtaa 144  Q
    ||||||| ||| ||||||||||||||||||||| || |||||||||||    
T  39539812 aaataagctgaaaacagcttatggacatgtcataagttgtttccgtaa 39539765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 5006636 - 5006563
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgt-agctataacttgttttcata 74  Q
    |||||||||||| |||||||||||||| ||||| || |||||||||||| || | || ||||| |||||||||||    
T  5006636 gtataagctattcctataacaaaagat-aaaataaagtcaaactgttttcatataaggtataaattgttttcata 5006563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 27389342 - 27389308
Alignment:
Q  210 atagaaatagctcatacataaacacttatatgata 244  Q
    |||||||||||| ||||||||||||||||||||||    
T  27389342 atagaaatagcttatacataaacacttatatgata 27389308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 28178912 - 28178942
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  28178912 gtataagctatttctataacaaaagataaaa 28178942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 28702703 - 28702733
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  28702703 gtataagctatttctataacaaaagataaaa 28702733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 33894566 - 33894596
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  33894566 gtataagctatttctataacaaaagataaaa 33894596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 35809031 - 35809001
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  35809031 gtataagctatttctataacaaaagataaaa 35809001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 43153029 - 43152999
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  43153029 gtataagctatttctataacaaaagataaaa 43152999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 44151553 - 44151479
Alignment:
Q  55 agctataacttgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcat 129  Q
    |||||||| ||||||||||| |||||| |    ||||||| |||||||| ||| |||| ||||||||||||||||    
T  44151553 agctataagttgttttcataaactatcttgaaaagcttatggaaataagctgaaaacatcttatggacatgtcat 44151479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 45859587 - 45859510
Alignment:
Q  67 ttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaag 145  Q
    |||||||||||||||||   ||||||||||||||||| ||| |||| | |||| |||||||||  | ||||||||||||    
T  45859587 ttttcatagactatcatgaagagcttatagaaataagctgaaaacaac-tatgaacatgtcatatgttgtttccgtaag 45859510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 2223091 - 2223120
Alignment:
Q  1 gtataagctatttctataacaaaagataaa 30  Q
    ||||||||||||||||||||||||||||||    
T  2223091 gtataagctatttctataacaaaagataaa 2223120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 2894760 - 2894789
Alignment:
Q  1 gtataagctatttctataacaaaagataaa 30  Q
    ||||||||||||||||||||||||||||||    
T  2894760 gtataagctatttctataacaaaagataaa 2894789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 3468623 - 3468696
Alignment:
Q  67 ttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttcc 140  Q
    ||||||||  ||||| ||| || ||| | |||||||||||  |||| ||||||||||||||||||| |||||||    
T  3468623 ttttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgtttcc 3468696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 29290371 - 29290420
Alignment:
Q  96 gaaataagttgacaacagcttatggacatgtcattagctgtttccgtaag 145  Q
    |||||| ||||| ||||||||||||||||||||| || ||||||| ||||    
T  29290371 gaaatatgttgaaaacagcttatggacatgtcataagttgtttccataag 29290420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 42656459 - 42656488
Alignment:
Q  2 tataagctatttctataacaaaagataaaa 31  Q
    ||||||||||||||||||||||||||||||    
T  42656459 tataagctatttctataacaaaagataaaa 42656488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 45078316 - 45078349
Alignment:
Q  96 gaaataagttgacaacagcttatggacatgtcat 129  Q
    |||||||||||| |||||||||||||||||||||    
T  45078316 gaaataagttgaaaacagcttatggacatgtcat 45078349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1423089 - 1423136
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttt 49  Q
    |||||||||||||  |||||||||||| ||||| |||||||||||||||    
T  1423089 gtataagctattttcataacaaaagat-aaaataaattcaaactgtttt 1423136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 5276432 - 5276464
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaat 33  Q
    ||||||||||||| |||||||||||||||||||    
T  5276432 gtataagctatttttataacaaaagataaaaat 5276464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 22388029 - 22388001
Alignment:
Q  3 ataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||    
T  22388029 ataagctatttctataacaaaagataaaa 22388001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 23214831 - 23214859
Alignment:
Q  2 tataagctatttctataacaaaagataaa 30  Q
    |||||||||||||||||||||||||||||    
T  23214831 tataagctatttctataacaaaagataaa 23214859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 27708912 - 27708884
Alignment:
Q  3 ataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||    
T  27708912 ataagctatttctataacaaaagataaaa 27708884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 28076600 - 28076640
Alignment:
Q  104 ttgacaacagcttatggacatgtcattagctgtttccgtaa 144  Q
    |||| |||| ||||||||||||||||||| |||||||||||    
T  28076600 ttgaaaacaacttatggacatgtcattagttgtttccgtaa 28076640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 28702676 - 28702640
Alignment:
Q  259 ttatgctattagtgcttaattaagctgtttatccaaa 295  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  28702676 ttatgctataagtgcttaattaagttgtttatccaaa 28702640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 36646508 - 36646385
Alignment:
Q  2 tataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcatagactatcatagggagcttatagaaat 100  Q
    |||||||||||||||| ||||||||||||| | || |  || |||||| || || | |||||||||||||||||  ||||| ||| ||| ||||||||||    
T  36646508 tataagctatttctatgacaaaagataaaa-taaagtataattgttttcatataagttataacttgttttcataagctatcctagagagtttatagaaat 36646410  T
Q  101 aagttgacaacagcttatggacatg 125  Q
    ||| ||| |||||||||||||||||    
T  36646409 aagatgaaaacagcttatggacatg 36646385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 30923961 - 30923886
Alignment:
Q  65 tgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttcc 140  Q
    ||||||||||  ||||| ||| ||| ||||||||||||| ||| |||||||||| |||||||||| ||||||||||    
T  30923961 tgttttcataacctatcctagagagtttatagaaataagctgaaaacagcttatagacatgtcataagctgtttcc 30923886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 43115010 - 43115138
Alignment:
Q  11 tttctataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcatagactatcatagggagcttatagaaataagttgaca 109  Q
    ||||||||||||||||||||| | ||||   |||||||| || || ||||||| ||||||||||  |||||||| | |||||||| |||||||| ||| |    
T  43115010 tttctataacaaaagataaaa-taaattttgactgtttt-atataagctataagttgttttcatgaactatcattgagagcttatggaaataagctgaaa 43115107  T
Q  110 acagcttatggacatgtcattagctgtttcc 140  Q
    |||  ||||||||||||||| || |||||||    
T  43115108 acaagttatggacatgtcataagttgtttcc 43115138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 20192647 - 20192595
Alignment:
Q  87 gagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttc 139  Q
    |||||||| ||||| |||||| ||||||||||||||||||||| |||||||||    
T  20192647 gagcttatggaaatgagttgaaaacagcttatggacatgtcataagctgtttc 20192595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 38462225 - 38462352
Alignment:
Q  2 tataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcatagactatcatagggagcttatagaaat 100  Q
    ||||||||||||||||| |||||||| ||||| || |||||||||||| || || |||||||  ||||||||||  |||||  ||  ||||||| |||||    
T  38462225 tataagctatttctataccaaaagat-aaaataaagtcaaactgttttcatatatgctataaactgttttcataagctatccaagatagcttatggaaat 38462323  T
Q  101 aagttgacaacagcttatggacatgtcat 129  Q
    ||| ||| |||| ||||||| || |||||    
T  38462324 aagctgaaaacaacttatggtcaagtcat 38462352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 31010421 - 31010483
Alignment:
Q  77 ctatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttc 139  Q
    ||||||||| |||||||| ||| |||| ||| ||||||||||||||||||||| || ||||||    
T  31010421 ctatcatagagagcttatggaattaagctgaaaacagcttatggacatgtcataagttgtttc 31010483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 40122879 - 40122811
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgtagctataacttgtttt 70  Q
    |||||||||||||| |||||||||||| ||||| || |||||||||||| ||  |||||||| |||||||    
T  40122879 gtataagctatttcaataacaaaagat-aaaataaagtcaaactgttttcataaagctataagttgtttt 40122811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 53848124 - 53848063
Alignment:
Q  67 ttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtca 128  Q
    |||||||| ||||||  || |||||||||||||||||  || ||||||||||||||||||||    
T  53848124 ttttcataaactatcccagagagcttatagaaataagccgaaaacagcttatggacatgtca 53848063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 37273141 - 37273221
Alignment:
Q  65 tgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaag 145  Q
    ||||||||||  ||||| | | || ||||| |||||||||||| |||| |||||||||||||||| || ||||||| ||||    
T  37273141 tgttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataag 37273221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 49587042 - 49586996
Alignment:
Q  2 tataagctatttctataacaaaagataaaaatcaattcaaactgtttt 49  Q
    |||||||||||||||||||||||||| ||||| || ||||||||||||    
T  49587042 tataagctatttctataacaaaagat-aaaataaagtcaaactgtttt 49586996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 905097 - 905067
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  905097 gtataagctatttctataacaaaagataaaa 905067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 1395614 - 1395644
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  1395614 gtataagctatttctataacaaaagataaaa 1395644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 2128378 - 2128348
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  2128378 gtataagctatttctataacaaaagataaaa 2128348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 2152238 - 2152168
Alignment:
Q  68 tttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgttt 138  Q
    ||||||| |||||| | | ||||||||||||| ||||||| ||||||||| | ||||||||| || |||||    
T  2152238 tttcataaactatccttgagagcttatagaaacaagttgaaaacagcttacgaacatgtcataagttgttt 2152168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 5391918 - 5391968
Alignment:
Q  97 aaataagttgacaacagcttatggacatgtcattagctgtttccgtaagtt 147  Q
    ||||||||||| ||||||||||| ||||||||| |||||||| | ||||||    
T  5391918 aaataagttgaaaacagcttatgaacatgtcataagctgttttcataagtt 5391968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 27792815 - 27792932
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcatagactatcatagggagcttatagaaa 99  Q
    |||||||||||||| | |||||||||||||| | |  ||||||| |||| || || |||  || ||||||||||| ||||||||   |||||||||||||    
T  27792815 gtataagctatttcaaaaacaaaagataaaa-taaggtcaaactattttcatataagctgcaagttgttttcataaactatcatgtagagcttatagaaa 27792913  T
Q  100 taagttgacaacagcttat 118  Q
    |||| ||| |||| |||||    
T  27792914 taagctgaaaacaacttat 27792932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 42809244 - 42809274
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  42809244 gtataagctatttctataacaaaagataaaa 42809274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 54180843 - 54180769
Alignment:
Q  65 tgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttc 139  Q
    ||||||||||  |||| || | ||||||||| ||||||| | | |||| |||||||||||||||| |||||||||    
T  54180843 tgttttcataagctattatggagagcttatataaataagctaaaaacaacttatggacatgtcataagctgtttc 54180769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 1217828 - 1217783
Alignment:
Q  100 taagttgacaacagcttatggacatgtcattagctgtttccgtaag 145  Q
    |||| ||| |||| |||||||||||||||| |||||||||||||||    
T  1217828 taagatgaaaacaacttatggacatgtcataagctgtttccgtaag 1217783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 1809983 - 1810064
Alignment:
Q  64 ttgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaag 145  Q
    |||||||||||  ||||| || | | ||||||||||||||  || |||| || ||||||||||||| || ||||||||||||    
T  1809983 ttgttttcataagctatcctacgaaacttatagaaataagcagaaaacaactcatggacatgtcataagttgtttccgtaag 1810064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 48049046 - 48048981
Alignment:
Q  64 ttgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcat 129  Q
    ||||||||||   ||||| | ||||| |||| |||||||| ||| |||||||||||||||||||||    
T  48049046 ttgttttcattagctatcttggggaggttatggaaataagctgaaaacagcttatggacatgtcat 48048981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 53762425 - 53762384
Alignment:
Q  97 aaataagttgacaacagcttatggacatgtcattagctgttt 138  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||    
T  53762425 aaataagttgaaaacagcttatgaacatgtcataagctgttt 53762384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 3044300 - 3044248
Alignment:
Q  87 gagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttc 139  Q
    ||||||||  ||||||||||| ||||||||||| ||||||||| || ||||||    
T  3044300 gagcttatgaaaataagttgaaaacagcttatgaacatgtcataagttgtttc 3044248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 13804816 - 13804848
Alignment:
Q  97 aaataagttgacaacagcttatggacatgtcat 129  Q
    ||||||||||| |||||||||||||||||||||    
T  13804816 aaataagttgaaaacagcttatggacatgtcat 13804848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 15304472 - 15304444
Alignment:
Q  3 ataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||    
T  15304472 ataagctatttctataacaaaagataaaa 15304444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 20874451 - 20874487
Alignment:
Q  259 ttatgctattagtgcttaattaagctgtttatccaaa 295  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  20874451 ttatgctataagtgcttaattaagttgtttatccaaa 20874487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 31337413 - 31337381
Alignment:
Q  117 atggacatgtcattagctgtttccgtaagtttt 149  Q
    |||||||||||||||||||||||| ||||||||    
T  31337413 atggacatgtcattagctgtttccataagtttt 31337381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41028978 - 41028931
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttt 49  Q
    |||||||||||||||||||||||||| |||||| || |||| |||||||    
T  41028978 gtataagctatttctataacaaaaga-aaaaataaagtcaatctgtttt 41028931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 41724251 - 41724303
Alignment:
Q  97 aaataagttgacaacagcttatggacatgtcattagctgtttccgtaagtttt 149  Q
    ||||||| ||| |||| |||||||||||||||| || ||||||| ||||||||    
T  41724251 aaataagctgaaaacaacttatggacatgtcataagttgtttccataagtttt 41724303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 48323765 - 48323848
Alignment:
Q  2 tataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgt-agctataacttgttttcatagactatcatag 85  Q
    |||||| ||||||||||| ||||||| || || || ||||| ||||||| ||| |||||||| ||||||||||| | ||||||||    
T  48323765 tataagttatttctataataaaagat-aatataaagtcaaattgtttttctgtaagctataaattgttttcataaattatcatag 48323848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 28933767 - 28933881
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcatagactatcatagggagcttatagaaa 99  Q
    ||||||||||||| ||||||||||||||||| |||| ||||| | |||| || || | ||||| |||||||||||  ||||| ||| ||||| |||||||    
T  28933767 gtataagctatttatataacaaaagataaaa-tcaaatcaaattattttcatttaagttataaattgttttcataagctatcctagagagctgatagaaa 28933865  T
Q  100 taagttgacaacagct 115  Q
    |||||||| |||||||    
T  28933866 taagttgaaaacagct 28933881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 1939458 - 1939331
Alignment:
Q  2 tataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgt--agctataacttgttttcatagactatcatagggagcttatagaaa 99  Q
    |||||| ||||||||||||||||||||||| | || | ||||| |||| || |  |||||||||| |||||||||  ||||  | | |||||||| ||||    
T  1939458 tataagttatttctataacaaaagataaaa-taaagtgaaactattttcatattgagctataact-gttttcataagctatactggagagcttatggaaa 1939361  T
Q  100 taagttgacaacagcttatggacatgtcat 129  Q
    |||||||| |||||||||||||||||||||    
T  1939360 taagttgaaaacagcttatggacatgtcat 1939331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 9878805 - 9878665
Alignment:
Q  5 aagctatttctataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcatagactatcatagggagcttatagaaataag 103  Q
    ||||||||||||||||||||||||||| | || ||||||| ||||||  || ||||||| ||||||||||   |||||   | ||||||  |||||||||    
T  9878805 aagctatttctataacaaaagataaaa-taaactcaaactatttttacatatgctataagttgttttcattcgctatcccggagagcttgaagaaataag 9878707  T
Q  104 ttgacaacagcttatggacatgtcattagctgtttccgtaag 145  Q
    | || |||| |||||||||||||||| || ||||||| ||||    
T  9878706 tcgaaaacaacttatggacatgtcataagttgtttccataag 9878665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 32821754 - 32821890
Alignment:
Q  3 ataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgtagctataacttgttttcatagactatcatagggagcttatagaaataa 102  Q
    ||||||||||| |||||||||||||||||   || ||| | | ||||  |  ||||||||  ||||||||||  ||||| ||  ||||||||||||||||    
T  32821754 ataagctatttttataacaaaagataaaataaaagtcataatattttatttgagctataaactgttttcataagctatcctaaagagcttatagaaataa 32821853  T
Q  103 gttgacaacagcttatggacatgtcattagctgtttc 139  Q
      ||| ||||||||||||||||||||| || ||||||    
T  32821854 actgaaaacagcttatggacatgtcataagttgtttc 32821890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 33942094 - 33942221
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcatagactatcatagggagcttatagaaa 99  Q
    |||| ||||||||||| | |||||||||||| | || |||||||||||| ||||| ||||||| |||||||||||  | ||||||| ||||| ||  |||    
T  33942094 gtatgagctatttcta-atcaaaagataaaa-taaagtcaaactgttttcatgtaagctataagttgttttcataagccatcatagagagctaatgaaaa 33942191  T
Q  100 taagttgacaacagcttatggacatgtcat 129  Q
    | || ||| ||||||||||| |||||||||    
T  33942192 ttagctgaaaacagcttatgaacatgtcat 33942221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 10285813 - 10285931
Alignment:
Q  10 atttctataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcatagactatcatagggagcttatagaaataagttgac 108  Q
    ||||||||| ||||||| |||||| || |||||||| ||| || || ||||||| | |||| ||||  ||| ||||| || ||||| ||||||||||||     
T  10285813 atttctataccaaaaga-aaaaat-aagtcaaactggtttcatataagctataagtcgtttgcataagctaacatagagaacttatggaaataagttgaa 10285910  T
Q  109 aacagcttatggacatgtcat 129  Q
    |||||||||||||||||||||    
T  10285911 aacagcttatggacatgtcat 10285931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 34652077 - 34652025
Alignment:
Q  87 gagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttc 139  Q
    |||||||| |||||||||||| ||||||||||||||||||||| || ||||||    
T  34652077 gagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtttc 34652025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 10143115 - 10143197
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgt-agctataacttgttttcatagactatcat 83  Q
    ||||||| ||||||||||||||||||| ||||| || ||||||||||||||| | |||||||| || ||||||||  |||||||    
T  10143115 gtataagttatttctataacaaaagat-aaaattaagtcaaactgtttttatataagctataagtttttttcataagctatcat 10143197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 1647255 - 1647331
Alignment:
Q  77 ctatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaagtttttcta 153  Q
    |||| |||| |||||||| |||||||| ||| |||||||||||  |||||||| |||||||| | |||||| |||||    
T  1647255 ctattatagagagcttatggaaataagctgaaaacagcttatgagcatgtcataagctgttttcataagttcttcta 1647331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 41033077 - 41033045
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaat 33  Q
    |||||||||||||||||||||||||||||||||    
T  41033077 gtataagctatttctataacaaaagataaaaat 41033045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 1742157 - 1742015
Alignment:
Q  3 ataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcatagactatcatagggagcttatagaaata 101  Q
    |||| ||||||||||||||||| |||||| | || ||||||| ||| ||| || | |||||  ||||||||||  |||||||   ||| |||| ||||||    
T  1742157 ataaactatttctataacaaaatataaaa-tgaagtcaaactctttatatataagatataagctgttttcataatctatcatgaagagtttatggaaata 1742059  T
Q  102 agttgacaacagcttatggacatgtcattagctgtttccgtaag 145  Q
    ||||||  | |||||||| ||||||||| || ||||||| ||||    
T  1742058 agttgaagatagcttatgcacatgtcataagttgtttccataag 1742015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 5133715 - 5133745
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  5133715 gtataagctatttctataacaaaagataaaa 5133745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 9478258 - 9478224
Alignment:
Q  210 atagaaatagctcatacataaacacttatatgata 244  Q
    |||||||||||| ||||||||||||||||||||||    
T  9478258 atagaaatagcttatacataaacacttatatgata 9478224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 300
Target Start/End: Original strand, 11393520 - 11393558
Alignment:
Q  262 tgctattagtgcttaattaagctgtttatccaaaaaagg 300  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  11393520 tgctataagtgcttaattaagctgtttatccaaacaagg 11393558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 300
Target Start/End: Original strand, 11410181 - 11410219
Alignment:
Q  262 tgctattagtgcttaattaagctgtttatccaaaaaagg 300  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  11410181 tgctataagtgcttaattaagctgtttatccaaacaagg 11410219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 38239678 - 38239648
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  38239678 gtataagctatttctataacaaaagataaaa 38239648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 656903 - 656874
Alignment:
Q  2 tataagctatttctataacaaaagataaaa 31  Q
    ||||||||||||||||||||||||||||||    
T  656903 tataagctatttctataacaaaagataaaa 656874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 14209223 - 14209267
Alignment:
Q  4 taagctatttctataacaaaagataaaaatcaattcaaactgtttt 49  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||||    
T  14209223 taagctatttcaataacaaaagat-aaaataaattcaaactgtttt 14209267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 17952827 - 17952798
Alignment:
Q  2 tataagctatttctataacaaaagataaaa 31  Q
    ||||||||||||||||||||||||||||||    
T  17952827 tataagctatttctataacaaaagataaaa 17952798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 31461382 - 31461411
Alignment:
Q  2 tataagctatttctataacaaaagataaaa 31  Q
    ||||||||||||||||||||||||||||||    
T  31461382 tataagctatttctataacaaaagataaaa 31461411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 32098434 - 32098405
Alignment:
Q  2 tataagctatttctataacaaaagataaaa 31  Q
    ||||||||||||||||||||||||||||||    
T  32098434 tataagctatttctataacaaaagataaaa 32098405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 40837555 - 40837526
Alignment:
Q  1 gtataagctatttctataacaaaagataaa 30  Q
    ||||||||||||||||||||||||||||||    
T  40837555 gtataagctatttctataacaaaagataaa 40837526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 43985238 - 43985295
Alignment:
Q  87 gagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaa 144  Q
    |||||||| |||| ||||||| || |||||||||||||||||| || |||||| ||||    
T  43985238 gagcttatggaaacaagttgaaaaaagcttatggacatgtcataagttgtttcagtaa 43985295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 750358 - 750422
Alignment:
Q  65 tgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcat 129  Q
    ||||||||||  ||||||||| |||||||| || | ||||||  ||||| |||||||||||||||    
T  750358 tgttttcataagctatcatagagagcttatggagacaagttgcaaacagtttatggacatgtcat 750422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 787373 - 787421
Alignment:
Q  99 ataagttgacaacagcttatggacatgtcattagctgtttccgtaagtt 147  Q
    ||||| ||| ||||||||||||||||||||| |||||||| | ||||||    
T  787373 ataagctgaaaacagcttatggacatgtcataagctgttttcataagtt 787421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 9477908 - 9477936
Alignment:
Q  1 gtataagctatttctataacaaaagataa 29  Q
    |||||||||||||||||||||||||||||    
T  9477908 gtataagctatttctataacaaaagataa 9477936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 10198531 - 10198479
Alignment:
Q  77 ctatcatagggagcttatagaaataagttgacaacagcttatggacatgtcat 129  Q
    ||||| ||| ||| |||| |||||||| ||||||||||||||| |||||||||    
T  10198531 ctatcctagagagattatggaaataagctgacaacagcttatgaacatgtcat 10198479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 13864609 - 13864577
Alignment:
Q  210 atagaaatagctcatacataaacacttatatga 242  Q
    |||||||||||| ||||||||||||||||||||    
T  13864609 atagaaatagcttatacataaacacttatatga 13864577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 33087724 - 33087696
Alignment:
Q  2 tataagctatttctataacaaaagataaa 30  Q
    |||||||||||||||||||||||||||||    
T  33087724 tataagctatttctataacaaaagataaa 33087696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 145
Target Start/End: Complemental strand, 41851179 - 41851147
Alignment:
Q  113 gcttatggacatgtcattagctgtttccgtaag 145  Q
    ||||||||||||||||| |||||||||||||||    
T  41851179 gcttatggacatgtcataagctgtttccgtaag 41851147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 43635251 - 43635283
Alignment:
Q  259 ttatgctattagtgcttaattaagctgtttatc 291  Q
    ||||||||| |||||||||||||||||||||||    
T  43635251 ttatgctataagtgcttaattaagctgtttatc 43635283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 43808531 - 43808499
Alignment:
Q  214 aaatagctcatacataaacacttatatgatacg 246  Q
    |||||||| ||||||||||||||||||||||||    
T  43808531 aaatagcttatacataaacacttatatgatacg 43808499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 138
Target Start/End: Original strand, 14295454 - 14295586
Alignment:
Q  6 agctatttctataacaaaagataaaaatcaattcaaactgtttttatgt-agctataacttgttttcatagactatcatagggagcttatagaaataagt 104  Q
    |||||||||||||||||||||| ||||| || |||||||||||| || | ||||||||  ||||||| ||  ||||| | | |||||| ||||| ||||     
T  14295454 agctatttctataacaaaagat-aaaataaagtcaaactgttttcatataagctataagctgttttcgtaagctatcctggagagcttttagaagtaagc 14295552  T
Q  105 tgacaacagcttatggacatgtcattagctgttt 138  Q
    ||| |||||||||| ||||| |||| ||||||||    
T  14295553 tgaaaacagcttatcgacatatcataagctgttt 14295586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 28350954 - 28350907
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgttt 48  Q
    |||||||||||||||| || |||||||||||||||| |||||||||||    
T  28350954 gtataagctatttctagaataaaagataaaaatcaaatcaaactgttt 28350907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 34690817 - 34690943
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgtagctataacttgttttcatagactatcatagggagcttatagaaat 100  Q
    ||||| ||||||||||||||||||||||||| | || ||| | |  ||| || ||||||||| ||||| |||||  | ||| | | |||||||| |||||    
T  34690817 gtatacgctatttctataacaaaagataaaa-taaagtcacaatactttcatatagctataagttgttctcataagccatcttggagagcttatggaaat 34690915  T
Q  101 aagttgacaacagcttatggacatgtca 128  Q
    |||| || |||| |||||||||||||||    
T  34690916 aagtcgataacaacttatggacatgtca 34690943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 40205138 - 40205064
Alignment:
Q  64 ttgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgttt 138  Q
    |||||||||||  ||||| | | ||||||||||||||||| ||| ||||| |||||||||||| || ||||||||    
T  40205138 ttgttttcataagctatcctggagagcttatagaaataagctgaaaacagattatggacatgttataagctgttt 40205064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1773552 - 1773516
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaat 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  1773552 gtataagctatttctataacaaaagataaaattcaat 1773516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 16889678 - 16889801
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttttat-gtagctataacttgttttcatagactatcatagggagcttatagaaa 99  Q
    |||||||||||||| |||||||||||| ||| | || ||||||||||||||| | ||||||||  ||||||||||  ||||  ||| ||| |||| ||||    
T  16889678 gtataagctatttccataacaaaagat-aaacttaagtcaaactgtttttatagaagctataagctgttttcataagctatgctagagagtttatggaaa 16889776  T
Q  100 taagttgacaacagcttatggacat 124  Q
    |||  ||| |||| ||||| |||||    
T  16889777 taatctgaaaacaacttatagacat 16889801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 18704162 - 18704025
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgt-agctataacttgttttcatagactatcatagggagcttatagaaa 99  Q
    ||||||| |||||||||||||||||||  |||| || |||| || ||||||| | |||||||| |||||||||||  |||| | |  || ||||| ||||    
T  18704162 gtataagttatttctataacaaaagat--aaataaagtcaagctatttttatataagctataagttgttttcataagctattacaaagatcttatggaaa 18704065  T
Q  100 taagttgacaacagcttatggacatgtcattagctgtttc 139  Q
    |||| ||| |||| ||||| ||||||| || || ||||||    
T  18704064 taagctgaaaacaacttatagacatgttataagttgtttc 18704025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 41957482 - 41957434
Alignment:
Q  97 aaataagttgacaacagcttatggacatgtcattagctgtttccgtaag 145  Q
    ||||||| ||| |||| |||||||||||||||| |||||||||||||||    
T  41957482 aaataagatgaaaacaacttatggacatgtcataagctgtttccgtaag 41957434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 14331396 - 14331470
Alignment:
Q  87 gagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaagtttttctatacaatctc 162  Q
    ||||||||  ||||||| ||| | ||||||||||||||||||| ||||||||  ||||||||||| | ||||||||    
T  14331396 gagcttatgaaaataagctgaaatcagcttatggacatgtcataagctgttt-tgtaagtttttccaaacaatctc 14331470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 17369480 - 17369425
Alignment:
Q  87 gagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgt 142  Q
    ||||||||||||||||  ||| |||| ||||| |||||||||| ||||||||||||    
T  17369480 gagcttatagaaataatctgaaaacaacttatagacatgtcataagctgtttccgt 17369425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 140
Target Start/End: Complemental strand, 36542404 - 36542270
Alignment:
Q  6 agctatttctataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcatagactatcatagggagcttatagaaataagt 104  Q
    |||||||||||||||||| ||||  | |||| |||||||||| | || || |||||||  || || ||||  ||||| ||| |||||| | |||||||||    
T  36542404 agctatttctataacaaacgatatta-tcaaatcaaactgttctcatataagctataagctgattccataagctatcctagagagcttgtggaaataagt 36542306  T
Q  105 tgacaacagcttatggacatgtcattagctgtttcc 140  Q
    | | |||||||| |||||||||||| || |||||||    
T  36542305 taaaaacagcttctggacatgtcataagatgtttcc 36542270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 7096254 - 7096224
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  7096254 gtataagctatttctataacaaaagataaaa 7096224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 11457128 - 11457185
Alignment:
Q  87 gagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaag 145  Q
    ||||||||||||||||  ||| ||||||||||||||||||||| || ||||||| ||||    
T  11457128 gagcttatagaaataatatga-aacagcttatggacatgtcataagttgtttccataag 11457185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 12407788 - 12407758
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  12407788 gtataagctatttctataacaaaagataaaa 12407758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 12460127 - 12460097
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  12460127 gtataagctatttctataacaaaagataaaa 12460097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 13224372 - 13224402
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  13224372 gtataagctatttctataacaaaagataaaa 13224402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 19369342 - 19369400
Alignment:
Q  87 gagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaag 145  Q
    |||||||||||||||| |||| |||||||||  |||||||||| ||||| |||| ||||    
T  19369342 gagcttatagaaataaattgaaaacagcttacagacatgtcatgagctgcttccataag 19369400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 37690756 - 37690635
Alignment:
Q  9 tatttctataacaaaagataaaaatcaattcaaactgtttttatgt-agctataacttgttttcataga-ctatcatagggagcttatagaaataagttg 106  Q
    ||||||||||| ||||||| |||||||| |||||  ||||| || | |||||||| ||||||||||| |  ||| || | |||||||| |||||||| ||    
T  37690756 tatttctataataaaagat-aaaatcaaatcaaaaagttttcatataagctataagttgttttcataaagttattatggagagcttatggaaataagctg 37690658  T
Q  107 acaacagcttatggacatgtcat 129  Q
    | ||||||||||  |||||||||    
T  37690657 aaaacagcttattaacatgtcat 37690635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 37968834 - 37968864
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  37968834 gtataagctatttctataacaaaagataaaa 37968864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 5563648 - 5563677
Alignment:
Q  2 tataagctatttctataacaaaagataaaa 31  Q
    ||||||||||||||||||||||||||||||    
T  5563648 tataagctatttctataacaaaagataaaa 5563677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 10303826 - 10303875
Alignment:
Q  88 agcttatagaaataagttgacaacagcttatggacatgtcattagctgtt 137  Q
    |||||||  ||||||| |||||||| ||||||||||||||||||| ||||    
T  10303826 agcttatgaaaataagctgacaacaacttatggacatgtcattagatgtt 10303875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 11714992 - 11714963
Alignment:
Q  2 tataagctatttctataacaaaagataaaa 31  Q
    ||||||||||||||||||||||||||||||    
T  11714992 tataagctatttctataacaaaagataaaa 11714963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 21768228 - 21768187
Alignment:
Q  97 aaataagttgacaacagcttatggacatgtcattagctgttt 138  Q
    ||||||||||| |||||| |||||||||||||| ||||||||    
T  21768228 aaataagttgaaaacagcgtatggacatgtcataagctgttt 21768187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 43215323 - 43215351
Alignment:
Q  2 tataagctatttctataacaaaagataaa 30  Q
    |||||||||||||||||||||||||||||    
T  43215323 tataagctatttctataacaaaagataaa 43215351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 36151632 - 36151504
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcatagactatcatagggagcttatagaaa 99  Q
    |||||||||||||| |||||||||||||||| | || ||||| ||||||  | || | ||||| |||||||| || || ||| ||| ||||||||  |||    
T  36151632 gtataagctatttcaataacaaaagataaaa-taaagtcaaattgttttcgtataagttataaattgttttcgtaaacaatcctagtgagcttatgaaaa 36151534  T
Q  100 taagttgacaacagcttatggacatgtcat 129  Q
    |||||||| ||||| |||||||||||||||    
T  36151533 taagttgaaaacaggttatggacatgtcat 36151504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 26184777 - 26184834
Alignment:
Q  87 gagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaa 144  Q
    |||||||| |||||||  ||| ||||||||||||||||||||| ||||||||||||||    
T  26184777 gagcttatggaaataatctgaaaacagcttatggacatgtcataagctgtttccgtaa 26184834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 147
Target Start/End: Complemental strand, 28689580 - 28689433
Alignment:
Q  2 tataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcataga--ctatcatagggagcttatagaa 98  Q
    ||||| ||||||||||| |||||||||||| | ||| |||   ||||| || || ||||||| ||||||||||| |  ||||| | |  |||||||  ||    
T  28689580 tataaactatttctatatcaaaagataaaa-taaatgcaagtggttttcatataagctataagttgttttcatataagctatcttggaaagcttatgaaa 28689482  T
Q  99 ataagttgacaacagcttatggacatgtcattagctgtttccgtaagtt 147  Q
    ||||| ||| |||| |||||||||||||||| |||||||||||||||||    
T  28689481 ataagctgaaaacaacttatggacatgtcataagctgtttccgtaagtt 28689433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 35925696 - 35925779
Alignment:
Q  64 ttgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaagtt 147  Q
    |||||| ||||  ||||||| | ||| |||| |||||||||||| ||||||||||| ||||||||| |||||||| | ||||||    
T  35925696 ttgtttccataagctatcatggagagtttatggaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagtt 35925779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 6231854 - 6231804
Alignment:
Q  90 cttatagaaataagttgacaacagcttatggacatgtcattagctgtttcc 140  Q
    |||||||||||||| ||| ||||| |||||||||||||||||| |||||||    
T  6231854 cttatagaaataagctgaaaacagtttatggacatgtcattagttgtttcc 6231804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 23895279 - 23895324
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtt 47  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||    
T  23895279 gtataagctatttctataacaaaagat-aaaataaattcaaactgtt 23895324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 30257680 - 30257754
Alignment:
Q  55 agctataacttgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcat 129  Q
    |||| ||| ||||||||||| |||||| | | | ||||||||||||||| ||| ||||||||||| |||||||||    
T  30257680 agctttaagttgttttcataaactatcctggagggcttatagaaataagctgaaaacagcttatgaacatgtcat 30257754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 11695858 - 11695943
Alignment:
Q  55 agctataacttgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttcc 140  Q
    ||||||||  |||||| |||||||||  | |  |||||||  ||||||||||| ||||||||||||||||||||| | ||||||||    
T  11695858 agctataaaatgtttttatagactattctggaaagcttatgaaaataagttgaaaacagcttatggacatgtcataaactgtttcc 11695943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 34380475 - 34380532
Alignment:
Q  88 agcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaag 145  Q
    ||||||| |||||||| ||| ||||||||||||| ||||||| | |||||||||||||    
T  34380475 agcttattgaaataagctgaaaacagcttatggaaatgtcataacctgtttccgtaag 34380532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 30259610 - 30259487
Alignment:
Q  5 aagctatttctataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcataga-ctatcatagggagcttatagaaataa 102  Q
    |||||||||||||||||||| |||||| | || |||||||| ||| || || |||||||  ||||| |||| | ||||||| | |||||||| |||||||    
T  30259610 aagctatttctataacaaaatataaaa-taaagtcaaactgctttgatataagctataagctgtttgcataaagctatcatggagagcttatggaaataa 30259512  T
Q  103 gttgacaacagcttatggacatgtc 127  Q
    ||||| ||||  |||| ||||||||    
T  30259511 gttgaaaacaatttattgacatgtc 30259487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 32515492 - 32515424
Alignment:
Q  77 ctatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaag 145  Q
    ||||||| | ||||||||||| ||||||||| |||| ||||| ||||||||||  ||||||||| ||||    
T  32515492 ctatcatggagagcttatagatataagttgaaaacaacttattgacatgtcatacgctgtttccataag 32515424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 39348040 - 39347956
Alignment:
Q  55 agctataacttgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttc 139  Q
    |||||||| ||||||||||| |||||| |    ||||||| |||||||| ||| |||| |||||||||||| |||| ||||||||    
T  39348040 agctataagttgttttcataaactatcctgcaaagcttatggaaataagctgaaaacaacttatggacatgccattggctgtttc 39347956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 27140497 - 27140560
Alignment:
Q  77 ctatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttcc 140  Q
    ||||||| | ||||||||  ||||||| ||| |||| |||||||||||||||| ||||||||||    
T  27140497 ctatcatggagagcttatgcaaataagctgaaaacaacttatggacatgtcataagctgtttcc 27140560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 27887191 - 27887112
Alignment:
Q  55 agctataacttgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagct 134  Q
    |||||||| ||||||||||| |||||||| | |||| |||| ||||||| | | ||||  ||||||||||||||| ||||    
T  27887191 agctataagttgttttcataaactatcatggagagcatataaaaataagctaaaaacaatttatggacatgtcataagct 27887112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 29723528 - 29723571
Alignment:
Q  97 aaataagttgacaacagcttatggacatgtcattagctgtttcc 140  Q
    ||||||||||| ||||| ||||||||||||||| ||||||||||    
T  29723528 aaataagttgaaaacagtttatggacatgtcataagctgtttcc 29723571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 29794073 - 29794112
Alignment:
Q  259 ttatgctattagtgcttaattaagctgtttatccaaaaaa 298  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  29794073 ttatgctataagcgcttaattaagctgtttatccaaaaaa 29794112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 30371105 - 30371229
Alignment:
Q  15 tataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcata-gactatcatagggagcttatagaaataagttgacaaca 112  Q
    ||||||||||||||||| | || ||||| |||||| || || ||||||| ||||||||||| ||| ||  | | |||| ||| |||||||| ||| ||||    
T  30371105 tataacaaaagataaaa-taaactcaaattgttttcatataagctataagttgttttcataagac-attttggagagcgtattgaaataagctgaaaaca 30371202  T
Q  113 gcttatggacatgtcattagctgtttc 139  Q
     ||||||||||||||||||| ||||||    
T  30371203 acttatggacatgtcattagttgtttc 30371229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 37811859 - 37811941
Alignment:
Q  65 tgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaagtt 147  Q
    ||||||||||  | ||||| | ||||| || |||||||||||| ||||| ||||| ||||||||| |||||||| | ||||||    
T  37811859 tgttttcataagccatcatggagagctaatggaaataagttgaaaacagtttatgaacatgtcataagctgttttcataagtt 37811941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 50319235 - 50319265
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  50319235 gtataagctatttctataacaaaagataaaa 50319265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 4622044 - 4622164
Alignment:
Q  9 tatttctataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcatagactatcatagggagcttatagaaataagttga 107  Q
    ||||||||||||||||||| ||| | |||||||||| |||| || || |||||||  ||||| ||||  ||||| | | |||||| |  ||||||| | |    
T  4622044 tatttctataacaaaagatcaaa-tgaattcaaactcttttcatataagctataagctgtttccatatgctatcttggagagcttgtgaaaataagctaa 4622142  T
Q  108 caacagcttatggacatgtcat 129  Q
     |||||||||||||||||||||    
T  4622143 aaacagcttatggacatgtcat 4622164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 13037807 - 13037836
Alignment:
Q  1 gtataagctatttctataacaaaagataaa 30  Q
    ||||||||||||||||||||||||||||||    
T  13037807 gtataagctatttctataacaaaagataaa 13037836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 15581285 - 15581378
Alignment:
Q  89 gcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaagtttttctatacaatctctcaactgtttatgtaagtag 182  Q
    ||||||||||||| | ||| |||||||||| |||||||||| || ||||||| | || | ||| | |||||||| ||| || |||||| |||||    
T  15581285 gcttatagaaataggctgaaaacagcttatagacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgcttatgtcagtag 15581378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 27963434 - 27963361
Alignment:
Q  64 ttgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtt 137  Q
    |||||||||||  |||| || | ||||||||| ||||||| | | |||| |||||||||||||||| |||||||    
T  27963434 ttgttttcataagctattatggagagcttatataaataagctaaaaacaacttatggacatgtcataagctgtt 27963361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 29665898 - 29665939
Alignment:
Q  259 ttatgctattagtgcttaattaagctgtttatccaaaaaagg 300  Q
    ||||||||| |||| |||||||||||||||||||||| ||||    
T  29665898 ttatgctataagtgtttaattaagctgtttatccaaacaagg 29665939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 33108663 - 33108594
Alignment:
Q  87 gagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaagtttttctatac 156  Q
    |||||||| |||||||||||| |||| ||||||| |||| ||| || ||||| | |||||| ||||||||    
T  33108663 gagcttatggaaataagttgaaaacaacttatggtcatggcatgagttgttttcataagttcttctatac 33108594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 39270488 - 39270415
Alignment:
Q  65 tgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgttt 138  Q
    ||||||||||  ||| ||||| |||| |||  ||||||||||| ||||||||||||||||| ||  ||||||||    
T  39270488 tgttttcataagctaccatagagagcatatgaaaataagttgaaaacagcttatggacatgccaaaagctgttt 39270415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 172704 - 172676
Alignment:
Q  1 gtataagctatttctataacaaaagataa 29  Q
    |||||||||||||||||||||||||||||    
T  172704 gtataagctatttctataacaaaagataa 172676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 138
Target Start/End: Complemental strand, 12564964 - 12564864
Alignment:
Q  39 caaactgtttttatgta-gctataacttgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtt 137  Q
    ||||||||||| || || ||||||| |||||||||||  ||||| |   | |||||  |||||||| ||| ||||||||||||||||| | |||||||||    
T  12564964 caaactgttttcatataagctataagttgttttcataagctatcttttagtgcttacggaaataagctgaaaacagcttatggacatggcgttagctgtt 12564865  T
Q  138 t 138  Q
    |    
T  12564864 t 12564864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 31294592 - 31294528
Alignment:
Q  57 ctataacttgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatgga 121  Q
    |||||| |||||||  || |||||||||| ||||||||  ||||||||||| || ||||||||||    
T  31294592 ctataagttgtttttgtaaactatcatagagagcttatgaaaataagttgaaaagagcttatgga 31294528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 37842428 - 37842336
Alignment:
Q  55 agctataacttgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaagtt 147  Q
    |||||||| |||||||||||  ||||| |   || |||||| ||||||| ||| ||| ||||||| |||||||||||| ||||| | ||||||    
T  37842428 agctataagttgttttcataagctatcttgaagaacttataaaaataagctgaaaactgcttatgaacatgtcattagatgttttcataagtt 37842336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 38578470 - 38578498
Alignment:
Q  1 gtataagctatttctataacaaaagataa 29  Q
    |||||||||||||||||||||||||||||    
T  38578470 gtataagctatttctataacaaaagataa 38578498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 44032040 - 44031992
Alignment:
Q  87 gagcttatagaaataagttgacaacagcttatggacatgtcattagctg 135  Q
    |||||||| ||||| || ||| || ||||||||||||||||||||||||    
T  44032040 gagcttatggaaattagctgaaaatagcttatggacatgtcattagctg 44031992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 45394148 - 45394204
Alignment:
Q  91 ttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaagtt 147  Q
    |||| |||||||||||| |||||||||| ||||| |||| |||||||| | ||||||    
T  45394148 ttattgaaataagttgaaaacagcttatcgacatctcataagctgttttcttaagtt 45394204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 45999415 - 45999387
Alignment:
Q  1 gtataagctatttctataacaaaagataa 29  Q
    |||||||||||||||||||||||||||||    
T  45999415 gtataagctatttctataacaaaagataa 45999387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 3738092 - 3738151
Alignment:
Q  81 catagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttcc 140  Q
    |||||| ||||||| |||||||||||| | ||||||||||||||||||| ||||||||||    
T  3738092 cataggcagcttattgaaataagttgaaagcagcttatggacatgtcataagctgtttcc 3738151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 9668026 - 9667973
Alignment:
Q  87 gagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttcc 140  Q
    |||||||| |||||||||||| ||||||||||||||||||||| || |||||||    
T  9668026 gagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtttcc 9667973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 138
Target Start/End: Original strand, 283092 - 283175
Alignment:
Q  55 agctataacttgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgttt 138  Q
    ||||||||  ||||| ||||| ||||| | || |||||||||||||||| ||| || || ||||||||||||||| ||||||||    
T  283092 agctataatctgtttgcataggctatcttcggaagcttatagaaataagctgaaaatagtttatggacatgtcataagctgttt 283175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 4246417 - 4246492
Alignment:
Q  65 tgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttcc 140  Q
    ||||||||||  |||| || | |||| |||| ||||||||||| ||||||||||||||||||||| || |||||||    
T  4246417 tgttttcataagctattatggagagcatataaaaataagttgaaaacagcttatggacatgtcatgagttgtttcc 4246492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4247761 - 4247717
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtt 47  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||    
T  4247761 gtataagctatttctataacaaaagataaaaa--aattcaaactgtt 4247717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 20671992 - 20671868
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgt-agctataacttgttttcatagactatcatagggagcttatagaaa 99  Q
    |||||||||||||||| | |||||||| ||||| || ||||| ||||||  | | |||| ||| ||||||||||| |||||||||| |||||| | |||     
T  20671992 gtataagctatttctagatcaaaagat-aaaataaagtcaaattgttttcgtataagctttaaattgttttcataaactatcatagagagctt-tggaag 20671895  T
Q  100 taagttgacaacagcttatggacatgt 126  Q
    |||| ||| ||||||||| ||||||||    
T  20671894 taagctgaaaacagcttacggacatgt 20671868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 31583709 - 31583759
Alignment:
Q  88 agcttatagaaataagttgacaacagcttatggacatgtcattagctgttt 138  Q
    ||||||| |||||||||||| |||| |||||||||||||||||||| ||||    
T  31583709 agcttatggaaataagttgaaaacaacttatggacatgtcattagcggttt 31583759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 1402942 - 1403038
Alignment:
Q  4 taagctatttctataacaaaagataaaaatcaattcaaactgtttttatgt-agctataacttgttttcatagactatcatagggagcttatagaaat 100  Q
    |||||||||||||||||||||||| ||||| || | ||||| |||| || | |||||||| |||||||||||  ||||||| | || |||||||||||    
T  1402942 taagctatttctataacaaaagat-aaaataaagttaaactattttcatataagctataaattgttttcataagctatcatggagatcttatagaaat 1403038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 281974 - 281847
Alignment:
Q  2 tataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgt-agctataacttgttttcatagactatcatagggagcttatagaaat 100  Q
    ||||||||||| |||||||||||||| ||||| || ||||  |||||| || | ||||||||  ||| ||||||  ||||| ||| ||||| || |||||    
T  281974 tataagctattcctataacaaaagat-aaaataaagtcaacttgttttcatataagctataagctgtgttcataagctatcctagagagctcatggaaat 281876  T
Q  101 aagttgacaacagcttatggacatgtcat 129  Q
    ||| ||| |||| ||||| ||||||||||    
T  281875 aagctgaaaacaacttatagacatgtcat 281847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 175
Target Start/End: Original strand, 2455839 - 2455927
Alignment:
Q  87 gagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaagtttttctatacaatctctcaactgtttatg 175  Q
    |||||||| |||||||||||| || || |||||| |||||||| || ||||||| |||| | ||||| |||||||| ||| || |||||    
T  2455839 gagcttatggaaataagttgaaaatagtttatgggcatgtcataagttgtttccataagctcttctaaacaatctcgcaagtgcttatg 2455927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 31624087 - 31624179
Alignment:
Q  55 agctataacttgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaagtt 147  Q
    ||||||||  ||||||||||| ||||| | | ||  ||||  ||||||||||| ||||||||||| ||||||||| |||||||| | ||||||    
T  31624087 agctataagctgttttcataggctatcttggagaaattatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagtt 31624179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 6647394 - 6647469
Alignment:
Q  65 tgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttcc 140  Q
    ||||||||||  ||||| ||| ||||||||  ||||||||||| |||| |||||| ||||||||| |||| |||||    
T  6647394 tgttttcataagctatcttagagagcttatgaaaataagttgaaaacatcttatgaacatgtcataagctatttcc 6647469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 2112199 - 2112281
Alignment:
Q  57 ctataacttgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttc 139  Q
    |||||| ||||||||||| |||||| ||| | ||||||||||||||   || |||| |||||| ||||||||| || ||||||    
T  2112199 ctataagttgttttcataaactatcttagagtgcttatagaaataaaccgaaaacaacttatgaacatgtcataagttgtttc 2112281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 2732288 - 2732186
Alignment:
Q  87 gagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaagtttttctatacaatctctcaactgtttatgtaagtaggcaa 186  Q
    |||||| ||||| |||| ||| ||||  |||||||||  ||||||||||||||| |||| ||||| | ||| |||| ||| || |||||| ||||| |||    
T  2732288 gagcttctagaagtaagctgaaaacaatttatggacagatcattagctgtttccataagcttttccaaacagtctcacaagtgcttatgtcagtagacaa 2732189  T
Q  187 gct 189  Q
    |||    
T  2732188 gct 2732186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 7148695 - 7148753
Alignment:
Q  87 gagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaag 145  Q
    ||||||||  ||||||||||| || |||||||||||| ||||| || ||||||||||||    
T  7148695 gagcttatgaaaataagttgaaaatagcttatggacaagtcataagttgtttccgtaag 7148753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 24782004 - 24782049
Alignment:
Q  3 ataagctatttctataacaaaagataaaaatcaattcaaactgtttt 49  Q
    ||||||||||||||||||||||||| |||||||| ||||| ||||||    
T  24782004 ataagctatttctataacaaaagat-aaaatcaaatcaaattgtttt 24782049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 31461621 - 31461651
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  31461621 gtataagctatttctataacaaaagataaaa 31461651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 31624201 - 31624231
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  31624201 gtataagctatttctataacaaaagataaaa 31624231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 34939777 - 34939831
Alignment:
Q  91 ttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaag 145  Q
    |||| |||||||| ||| ||||  ||||||||||||||| |||||||||||||||    
T  34939777 ttatggaaataagctgaaaacaatttatggacatgtcataagctgtttccgtaag 34939831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 2034487 - 2034434
Alignment:
Q  87 gagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttcc 140  Q
    |||||||  |||||||| ||| ||||||||||||| ||||||| ||||||||||    
T  2034487 gagcttaatgaaataagctgaaaacagcttatggaaatgtcataagctgtttcc 2034434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 33500608 - 33500579
Alignment:
Q  1 gtataagctatttctataacaaaagataaa 30  Q
    ||||||||||||||||||||||||||||||    
T  33500608 gtataagctatttctataacaaaagataaa 33500579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 323754 - 323801
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttt 49  Q
    ||||||||||||||||||  ||||||| ||||| |||||||||||||||    
T  323754 gtataagctatttctatattaaaagat-aaaataaattcaaactgtttt 323801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 4006659 - 4006730
Alignment:
Q  3 ataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgt-agctataacttgttttcata 74  Q
    ||||| ||||||||||||||| ||| ||||| || ||||| ||||||||| | |||||||| |||||||||||    
T  4006659 ataagatatttctataacaaatgat-aaaataaagtcaaattgtttttatataagctataagttgttttcata 4006730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 8420238 - 8420186
Alignment:
Q  87 gagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttc 139  Q
    |||||||| |||||||||||| || ||||| |||||||||||| |||| ||||    
T  8420238 gagcttatggaaataagttgaaaatagcttgtggacatgtcataagctatttc 8420186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 33925697 - 33925725
Alignment:
Q  2 tataagctatttctataacaaaagataaa 30  Q
    |||||||||||||||||||||||||||||    
T  33925697 tataagctatttctataacaaaagataaa 33925725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 5088881 - 5088939
Alignment:
Q  87 gagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaag 145  Q
    |||||||| |||||||||||| |||||||||||||||||| || | |||||||| ||||    
T  5088881 gagcttattgaaataagttgaaaacagcttatggacatgttataaactgtttccataag 5088939  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 140
Target Start/End: Complemental strand, 39551282 - 39551197
Alignment:
Q  55 agctataacttgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttcc 140  Q
    |||||||| |||||||||||  || || | | ||||||||| ||||||||| | |||||||| |||||||||||| || |||||||    
T  39551282 agctataagttgttttcataagctttcctggagagcttataaaaataagttaaaaacagcttttggacatgtcataagttgtttcc 39551197  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 3254259 - 3254319
Alignment:
Q  92 tatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaagtttttct 152  Q
    |||||||||||| ||| ||||||||||| ||||||||| |||||||| | |||||| ||||    
T  3254259 tatagaaataagctgaaaacagcttatgaacatgtcataagctgttttcttaagttcttct 3254319  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 12361221 - 12361273
Alignment:
Q  87 gagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttc 139  Q
    ||||| || |||||||||||| ||||||||||||||||||||| |||| ||||    
T  12361221 gagctaatggaaataagttgaaaacagcttatggacatgtcataagctatttc 12361273  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27465316 - 27465363
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttt 49  Q
    |||||||||||||||||| |||||||| |||||||| ||||||||||||    
T  27465316 gtataagctatttctatagcaaaagat-aaaatcaaatcaaactgtttt 27465363  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 10383892 - 10383974
Alignment:
Q  65 tgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaagtt 147  Q
    ||||||| || |||||||||  |||||||| |||||||| ||  ||||||||||| | ||||||| |||||||| | ||||||    
T  10383892 tgttttcgtaaactatcatatagagcttatggaaataagctgtaaacagcttatgaaaatgtcataagctgttttcataagtt 10383974  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 14949899 - 14949937
Alignment:
Q  91 ttatagaaataagttgacaacagcttatggacatgtcat 129  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  14949899 ttatagaaataagctgaaaacagcttatggacatgtcat 14949937  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 25869327 - 25869265
Alignment:
Q  67 ttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcat 129  Q
    ||||||||| ||||||| | ||| |||| |||||||| ||| |||| ||||||||||||||||    
T  25869327 ttttcataggctatcatggagagtttatggaaataagctgaaaacaacttatggacatgtcat 25869265  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 26215439 - 26215469
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  26215439 gtataagctatttctataacaaaagataaaa 26215469  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 42597344 - 42597417
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcata 74  Q
    ||||||||||||||||||||||||||||||| | || | ||| |||||| ||| | ||||||| |||||||||||    
T  42597344 gtataagctatttctataacaaaagataaaa-taaagtaaaattgttttcatgcaagctataagttgttttcata 42597417  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 7008548 - 7008507
Alignment:
Q  259 ttatgctattagtgcttaattaagctgtttatccaaaaaagg 300  Q
    ||||||||| || ||||||||||| |||||||||||||||||    
T  7008548 ttatgctataagcgcttaattaagttgtttatccaaaaaagg 7008507  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 30628029 - 30627929
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgt-agctataacttgttttcatagactatcatagggagcttatagaaa 99  Q
    ||||||||||||||| ||||||||||| ||||| || | ||| ||||| | ||| |||||||| |||||||||||   |||| ||| |||||||| ||||    
T  30628029 gtataagctatttctgtaacaaaagat-aaaataaaataaaattgtttatgtgtaagctataagttgttttcataagttatcttagagagcttatggaaa 30627931  T
Q  100 ta 101  Q
    ||    
T  30627930 ta 30627929  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 9835938 - 9835890
Alignment:
Q  90 cttatagaaataagttgacaacagcttatggacatgtcattagctgttt 138  Q
    ||||| |||||||| ||| ||||||||||| ||||||||| ||||||||    
T  9835938 cttatggaaataagatgaaaacagcttatgaacatgtcataagctgttt 9835890  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 33697078 - 33697050
Alignment:
Q  2 tataagctatttctataacaaaagataaa 30  Q
    |||||||||||||||||||||||||||||    
T  33697078 tataagctatttctataacaaaagataaa 33697050  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 38561670 - 38561753
Alignment:
Q  2 tataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgta-gctataacttgttttcatagactatcatag 85  Q
    |||||| ||||| ||||||||||||| ||||| || ||||||| ||||||| ||  |||||| ||||||||||| ||||| ||||    
T  38561670 tataagttatttatataacaaaagat-aaaataaagtcaaactatttttatctatactataagttgttttcataaactattatag 38561753  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 306332 - 306413
Alignment:
Q  64 ttgttttcatagactatcatagggagcttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaag 145  Q
    |||||||||||  ||||| ||| ||||||||  || |||| ||| |||||||||||| |||||||| |||||||||| ||||    
T  306332 ttgttttcataagctatcctagagagcttatgtaagtaagctgaaaacagcttatgggcatgtcataagctgtttccataag 306413  T

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Target: scaffold0590 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 1201 - 1171
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  1201 gtataagctatttctataacaaaagataaaa 1171  T

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Target: scaffold0275 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 2774 - 2804
Alignment:
Q  1 gtataagctatttctataacaaaagataaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  2774 gtataagctatttctataacaaaagataaaa 2804  T

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Target: scaffold0072 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 4989 - 5039
Alignment:
Q  88 agcttatagaaataagttgacaacagcttatggacatgtcattagctgttt 138  Q
    |||||||||||||||| | | | ||||||||||||||||||| ||||||||    
T  4989 agcttatagaaataagctaaaatcagcttatggacatgtcataagctgttt 5039  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 27519 - 27663
Alignment:
Q  1 gtataagctatttctataacaaaagataaaaatcaattcaaactgtttttatgt-agctataacttgttttcatagactatcatagggagcttatagaaa 99  Q
    ||||||| ||||||||||||| ||||| ||||| || ||||| |||||| || | | |||||| ||||||||||| |||||| | |  ||| | | ||||    
T  27519 gtataagttatttctataacagaagat-aaaataaagtcaaattgttttcatataaactataagttgttttcataaactatcttggtaagcgtgtggaaa 27617  T
Q  100 taagttgacaacagcttatggacatgtcattagctgtttccgtaag 145  Q
    |||| ||| |||| ||||| | |||||||| |||| ||||| ||||    
T  27618 taagctgaaaacaacttatagccatgtcataagctatttccataag 27663  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 98677 - 98624
Alignment:
Q  91 ttatagaaataagttgacaacagcttatggacatgtcattagctgtttccgtaa 144  Q
    |||| |||||||||||| ||||||||||| ||||||||| |||| ||| |||||    
T  98677 ttattgaaataagttgaaaacagcttatgaacatgtcataagctattttcgtaa 98624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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