View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8247_low_4 (Length: 434)
Name: NF8247_low_4
Description: NF8247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8247_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 5542984 - 5543399
Alignment:
| Q |
1 |
ccctaaagaaaaacaacaatatggctagtgatggaagtgaagtgttcaagttggtgtcaccagcaatagcaaacgaaggaaaactaccaagacaattcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5542984 |
ccctaaagaaaaacaacaatatggctagtgatggaagtgaagtgttcaagttggtgtcaccagcaatagcaaacgaaggaaaactaccaagacaattcac |
5543083 |
T |
|
| Q |
101 |
tgatgaaggacaaggagcaaagaaaaacatatcaccaccattggaatggtacaacatacctgaggggacaaaatctcttgcacttgttgtggaggatatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5543084 |
tgatgaaggacaaggagcaaagaaaaacatatcaccaccattagaatggtacaacctaccagaggggacaaaatctcttgcacttgttgtggaggatatt |
5543183 |
T |
|
| Q |
201 |
gatacacccgacccagaaggtccaattgtaccgtggacatgctgggtcgtggtgaatattcctccaacaattaaaggattgccggagggattctccggca |
300 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
5543184 |
gatacacccgatccagaaggtccaattgtaccgtggacatgctgggtcgtggtgaatattcctccgacaattaaaggattgccggagggattttccggca |
5543283 |
T |
|
| Q |
301 |
aagaggaggagatgggtggtgaatatgctgggatcaaagaagggaacaatgatttgaaacaacctgggtggcgtggtccgaggttgcctacacatggtca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5543284 |
aagaggaggagatgggtggtgaatatgctgggatcaaagaagggaacaatgatttaaaacaacctgggtggcgtggtccgaggttgcctacacatggtca |
5543383 |
T |
|
| Q |
401 |
taggttggagtttaag |
416 |
Q |
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| T |
5543384 |
taggttggagtttaag |
5543399 |
T |
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