View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8247_low_5 (Length: 280)

Name: NF8247_low_5
Description: NF8247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8247_low_5
NF8247_low_5
[»] chr5 (16 HSPs)
chr5 (184-248)||(25360921-25360985)
chr5 (182-248)||(13131410-13131476)
chr5 (182-248)||(15798416-15798482)
chr5 (179-247)||(19747875-19747943)
chr5 (185-248)||(36312283-36312346)
chr5 (189-248)||(16418427-16418486)
chr5 (190-233)||(17195701-17195744)
chr5 (191-248)||(34595140-34595197)
chr5 (182-222)||(12067920-12067960)
chr5 (202-248)||(21290425-21290471)
chr5 (189-235)||(37396536-37396582)
chr5 (202-248)||(25498207-25498255)
chr5 (198-235)||(35565100-35565137)
chr5 (199-235)||(1400645-1400681)
chr5 (182-214)||(18920574-18920606)
chr5 (199-235)||(35927779-35927815)
[»] chr4 (12 HSPs)
chr4 (182-248)||(42420856-42420922)
chr4 (185-248)||(23124862-23124925)
chr4 (190-248)||(20759471-20759530)
chr4 (190-248)||(20765862-20765921)
chr4 (185-245)||(17291772-17291832)
chr4 (190-248)||(31931396-31931454)
chr4 (190-235)||(12227821-12227866)
chr4 (191-235)||(21412859-21412903)
chr4 (191-232)||(18412427-18412468)
chr4 (202-235)||(51428537-51428570)
chr4 (199-235)||(957797-957833)
chr4 (199-235)||(42886092-42886128)
[»] scaffold0121 (1 HSPs)
scaffold0121 (179-244)||(5162-5227)
[»] scaffold0027 (1 HSPs)
scaffold0027 (182-248)||(36473-36539)
[»] chr2 (13 HSPs)
chr2 (182-248)||(26617805-26617871)
chr2 (182-248)||(31992265-31992331)
chr2 (179-248)||(15891973-15892042)
chr2 (190-248)||(28747283-28747341)
chr2 (190-248)||(18878326-18878384)
chr2 (202-248)||(40501112-40501158)
chr2 (182-246)||(11679419-11679484)
chr2 (189-248)||(20988339-20988398)
chr2 (202-235)||(20147951-20147984)
chr2 (199-235)||(3941570-3941606)
chr2 (199-235)||(6901799-6901835)
chr2 (199-235)||(31770196-31770232)
chr2 (199-235)||(33403851-33403887)
[»] chr7 (16 HSPs)
chr7 (182-248)||(3381005-3381071)
chr7 (182-248)||(12082740-12082806)
chr7 (182-248)||(28066064-28066130)
chr7 (187-248)||(7062052-7062113)
chr7 (185-248)||(149897-149960)
chr7 (189-248)||(26926325-26926384)
chr7 (187-240)||(7066546-7066599)
chr7 (191-248)||(16886829-16886886)
chr7 (204-239)||(3924639-3924674)
chr7 (202-248)||(5282539-5282585)
chr7 (185-248)||(11824498-11824565)
chr7 (190-248)||(12309930-12309988)
chr7 (199-235)||(2356120-2356156)
chr7 (199-235)||(21187636-21187672)
chr7 (199-235)||(41048621-41048657)
chr7 (199-235)||(48270479-48270515)
[»] chr6 (16 HSPs)
chr6 (182-248)||(20242460-20242526)
chr6 (182-248)||(22136444-22136510)
chr6 (182-248)||(17465601-17465667)
chr6 (190-248)||(20243990-20244048)
chr6 (190-248)||(22137974-22138032)
chr6 (190-248)||(5570952-5571010)
chr6 (185-248)||(33718876-33718943)
chr6 (203-248)||(34132400-34132447)
chr6 (203-248)||(18744307-18744353)
chr6 (199-235)||(3766061-3766097)
chr6 (199-235)||(29066392-29066428)
chr6 (199-235)||(29075405-29075441)
chr6 (199-235)||(29080169-29080205)
chr6 (199-235)||(29110374-29110410)
chr6 (199-235)||(32027968-32028004)
chr6 (199-235)||(32038027-32038063)
[»] chr1 (14 HSPs)
chr1 (190-248)||(19262711-19262769)
chr1 (182-248)||(15471334-15471400)
chr1 (182-244)||(31452075-31452137)
chr1 (187-248)||(27259743-27259804)
chr1 (189-248)||(34336017-34336076)
chr1 (189-248)||(48707249-48707308)
chr1 (182-233)||(14772864-14772919)
chr1 (207-248)||(25803917-25803958)
chr1 (190-235)||(26793137-26793182)
chr1 (199-235)||(6435601-6435637)
chr1 (199-235)||(29435802-29435838)
chr1 (199-235)||(29762562-29762598)
chr1 (199-235)||(44597530-44597566)
chr1 (199-235)||(49396533-49396569)
[»] chr3 (13 HSPs)
chr3 (189-248)||(17267631-17267690)
chr3 (189-248)||(55391103-55391162)
chr3 (190-248)||(43688207-43688265)
chr3 (199-235)||(2428330-2428366)
chr3 (203-248)||(1638951-1638996)
chr3 (199-235)||(7954046-7954082)
chr3 (199-235)||(19453569-19453605)
chr3 (191-235)||(20378219-20378263)
chr3 (199-235)||(24702611-24702647)
chr3 (199-235)||(41577771-41577807)
chr3 (199-235)||(41803746-41803782)
chr3 (199-235)||(45100805-45100841)
chr3 (199-235)||(49610332-49610368)
[»] chr8 (10 HSPs)
chr8 (182-248)||(12505046-12505111)
chr8 (193-239)||(26139886-26139932)
chr8 (190-236)||(27783281-27783327)
chr8 (198-235)||(42603293-42603330)
chr8 (199-235)||(2416754-2416790)
chr8 (191-235)||(3589585-3589629)
chr8 (199-235)||(18440634-18440670)
chr8 (199-235)||(24861182-24861218)
chr8 (199-235)||(26452164-26452200)
chr8 (199-235)||(44943419-44943455)
[»] scaffold0004 (1 HSPs)
scaffold0004 (199-235)||(39706-39742)


Alignment Details
Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 25360921 - 25360985
Alignment:
Q  184 aaacactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  25360921 aaacactgaacaaatcggtcattgtttcaaatctacaccataaaaaattaaacaatcaatgaaaa 25360985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 13131410 - 13131476
Alignment:
Q  182 gcaaacactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||    
T  13131410 gcaaacactgaacaaatcagtcattgtttcaaatctacaccataaaaaattaaacaatcaatgaaaa 13131476  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 15798416 - 15798482
Alignment:
Q  182 gcaaacactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||    
T  15798416 gcaaacattgaacaaatcagccattgtttcaaatctacaccataaaaaattaaacgatcaatgaaaa 15798482  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 19747943 - 19747875
Alignment:
Q  179 tacgcaaacactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaa 247  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||| | |||||| |||||||    
T  19747943 tacgcaaacactgaacaaattggtcattgtttcaaatctacaccataaaaaagtgaacaatcaatgaaa 19747875  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 36312283 - 36312346
Alignment:
Q  185 aacactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    ||||||||||||||||  |||||||||||| |||||||||||||||||||||||| ||||||||    
T  36312283 aacactgaacaaatcgatcattgtttcaaacctacaccataaaaaattaaacaatcaatgaaaa 36312346  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 16418427 - 16418486
Alignment:
Q  189 ctgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    |||||||||| | ||||| ||||||||||||||||||| |||||||||||| ||||||||    
T  16418427 ctgaacaaattgtccattatttcaaatctacaccataagaaattaaacaatcaatgaaaa 16418486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 17195701 - 17195744
Alignment:
Q  190 tgaacaaatcggccattgtttcaaatctacaccataaaaaatta 233  Q
    |||| |||||||||||||||||| ||||||||||||||||||||    
T  17195701 tgaaaaaatcggccattgtttcagatctacaccataaaaaatta 17195744  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 34595197 - 34595140
Alignment:
Q  191 gaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    |||||||| | ||||| ||||| ||||||||||||| |||||||||||| ||||||||    
T  34595197 gaacaaattgtccattctttcagatctacaccataagaaattaaacaatcaatgaaaa 34595140  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 12067920 - 12067960
Alignment:
Q  182 gcaaacactgaacaaatcggccattgtttcaaatctacacc 222  Q
    ||||||||| |||||||||||||||||||||||| ||||||    
T  12067920 gcaaacactaaacaaatcggccattgtttcaaatttacacc 12067960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 21290471 - 21290425
Alignment:
Q  202 ccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    ||||||||||| || |||||||||| |||||||||||| ||||||||    
T  21290471 ccattgtttcatatatacaccataagaaattaaacaattaatgaaaa 21290425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 37396582 - 37396536
Alignment:
Q  189 ctgaacaaatcggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    |||||||||| | |||||| |||| ||||||||||||||||||||||    
T  37396582 ctgaacaaattgtccattgcttcagatctacaccataaaaaattaaa 37396536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 25498255 - 25498207
Alignment:
Q  202 ccattgtttcaaatctacaccataaaaaatt--aaacaataaatgaaaa 248  Q
    |||||||||||||||||||| |||| |||||  ||||||||||||||||    
T  25498255 ccattgtttcaaatctacacaataagaaattaaaaacaataaatgaaaa 25498207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 35565137 - 35565100
Alignment:
Q  198 tcggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  35565137 tcggccattgtttcaaatctacacaataagaaattaaa 35565100  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 1400645 - 1400681
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  1400645 cggccattgtttcaaatctacacaataagaaattaaa 1400681  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 18920606 - 18920574
Alignment:
Q  182 gcaaacactgaacaaatcggccattgtttcaaa 214  Q
    |||||||||||| ||||||||||||||||||||    
T  18920606 gcaaacactgaaaaaatcggccattgtttcaaa 18920574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 35927779 - 35927815
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  35927779 cggccattgtttcaaatctacacaataagaaattaaa 35927815  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 42420922 - 42420856
Alignment:
Q  182 gcaaacactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||    
T  42420922 gcaaacactgaacaaatcgaccattgtttcaaatctacatcataaaaaattaaacaatcaatgaaaa 42420856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 23124862 - 23124925
Alignment:
Q  185 aacactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||    
T  23124862 aacactgaacaaatcggtcattgtttcaaacctacaccataaaaaattaaacaatcaatgaaaa 23124925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 20759471 - 20759530
Alignment:
Q  190 tgaacaaatcggccattgtttcaaatctacaccat-aaaaaattaaacaataaatgaaaa 248  Q
    ||||||||||| |||||||||||||||||||| || ||||||||||||||| ||||||||    
T  20759471 tgaacaaatcgaccattgtttcaaatctacacaataaaaaaattaaacaatcaatgaaaa 20759530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 20765862 - 20765921
Alignment:
Q  190 tgaacaaatcggccattgtttcaaatctacaccat-aaaaaattaaacaataaatgaaaa 248  Q
    ||||||||||| |||||||||||||||||||| || ||||||||||||||| ||||||||    
T  20765862 tgaacaaatcgaccattgtttcaaatctacacaataaaaaaattaaacaatcaatgaaaa 20765921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 17291832 - 17291772
Alignment:
Q  185 aacactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatga 245  Q
    ||||||||| ||||| | |||||||||||| ||||||||||||||| |||||||| |||||    
T  17291832 aacactgaataaatcagtcattgtttcaaacctacaccataaaaaagtaaacaatcaatga 17291772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 31931454 - 31931396
Alignment:
Q  190 tgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    ||||||||| | ||||||||||| ||||||||||||| |||||||||||| || |||||    
T  31931454 tgaacaaattgtccattgtttcagatctacaccataagaaattaaacaatcaacgaaaa 31931396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 12227821 - 12227866
Alignment:
Q  190 tgaacaaatcggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||| | ||||||||||||||||||||||||| ||||||||    
T  12227821 tgaacaaattgtccattgtttcaaatctacaccataagaaattaaa 12227866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 21412859 - 21412903
Alignment:
Q  191 gaacaaatcggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||||    
T  21412859 gaacatatcggccattgtttcaaatctacacaataagaaattaaa 21412903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 18412468 - 18412427
Alignment:
Q  191 gaacaaatcggccattgtttcaaatctacaccataaaaaatt 232  Q
    ||||| ||||||||||||||||||||||||| |||| |||||    
T  18412468 gaacatatcggccattgtttcaaatctacacaataagaaatt 18412427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 51428537 - 51428570
Alignment:
Q  202 ccattgtttcaaatctacaccataaaaaattaaa 235  Q
    |||||||||||||||||||| |||||||||||||    
T  51428537 ccattgtttcaaatctacacaataaaaaattaaa 51428570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 957797 - 957833
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  957797 cggccattgtttcaaatctacacaataagaaattaaa 957833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 42886128 - 42886092
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  42886128 cggccattgtttcaaatctacacaataagaaattaaa 42886092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 5227 - 5162
Alignment:
Q  179 tacgcaaacactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatg 244  Q
    |||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  5227 tacgcaaacacttaacaaattggtcattgtttcaaatctacaccataaaaaattaaacaataaatg 5162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 36539 - 36473
Alignment:
Q  182 gcaaacactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    ||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||    
T  36539 gcaaaaactgaacaaatcggtcattgtttcaaatctacatcataaaaaattaaacaatcaatgaaaa 36473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 26617805 - 26617871
Alignment:
Q  182 gcaaacactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||| ||||||||    
T  26617805 gcaaacactgaacaaatcagccattgtttgaaatctacaccataaaaaatgaaacaatcaatgaaaa 26617871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 31992265 - 31992331
Alignment:
Q  182 gcaaacactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    ||||||||| |||||||||| | |||||||||| ||||||||||||||||||| |||| ||||||||    
T  31992265 gcaaacactaaacaaatcggtcgttgtttcaaacctacaccataaaaaattaagcaatcaatgaaaa 31992331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 179 - 248
Target Start/End: Original strand, 15891973 - 15892042
Alignment:
Q  179 tacgcaaacactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    ||||||||||||||| ||||||| |||||||||||| |||||||||||| || |||||||| ||| ||||    
T  15891973 tacgcaaacactgaataaatcggtcattgtttcaaacctacaccataaagaaataaacaattaataaaaa 15892042  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 28747283 - 28747341
Alignment:
Q  190 tgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    ||||||||| | ||||||||||| ||||||||||||| |||||||||||| ||||||||    
T  28747283 tgaacaaattgtccattgtttcatatctacaccataagaaattaaacaatcaatgaaaa 28747341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 18878384 - 18878326
Alignment:
Q  190 tgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    |||||||||||| |||||||||||||||||| |||  ||||||||| ||| ||||||||    
T  18878384 tgaacaaatcggtcattgtttcaaatctacatcatttaaaattaaataatcaatgaaaa 18878326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 40501158 - 40501112
Alignment:
Q  202 ccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||    
T  40501158 ccattgtttcagatctacaccataagaaattaaacaatcaatgaaaa 40501112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 11679419 - 11679484
Alignment:
Q  182 gcaaacactgaacaaatcggccattgtttcaaatctacaccat-aaaaaattaaacaataaatgaa 246  Q
    ||||||| || ||||||| |||||| ||||||||||||||||| |||||| |||||||| ||||||    
T  11679419 gcaaacattgtacaaatcagccattttttcaaatctacaccataaaaaaaataaacaatcaatgaa 11679484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 20988398 - 20988339
Alignment:
Q  189 ctgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    ||||| |||| | ||||||||||| ||||||| ||||| |||||||||||| ||||||||    
T  20988398 ctgaataaattgtccattgtttcagatctacaacataagaaattaaacaatcaatgaaaa 20988339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 20147984 - 20147951
Alignment:
Q  202 ccattgtttcaaatctacaccataaaaaattaaa 235  Q
    |||||||||||||||||||| |||||||||||||    
T  20147984 ccattgtttcaaatctacacaataaaaaattaaa 20147951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 3941606 - 3941570
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  3941606 cggccattgtttcaaatctacacaataagaaattaaa 3941570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 6901835 - 6901799
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  6901835 cggccattgcttcaaatctacaccataagaaattaaa 6901799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 31770232 - 31770196
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  31770232 cggccattgtttcaaatctacacaataagaaattaaa 31770196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 33403887 - 33403851
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  33403887 cggccattgtttcaaatctacacaataagaaattaaa 33403851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 3381005 - 3381071
Alignment:
Q  182 gcaaacactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    |||||||||||||||||| | |||||||||||| |||||||| ||||||||||||||| ||||||||    
T  3381005 gcaaacactgaacaaatcagtcattgtttcaaacctacaccaaaaaaaattaaacaatcaatgaaaa 3381071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 12082806 - 12082740
Alignment:
Q  182 gcaaacactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    ||||||||||||| ||||   |||||||||||| |||||||||||||||||||||||| ||||||||    
T  12082806 gcaaacactgaacgaatcaatcattgtttcaaacctacaccataaaaaattaaacaatcaatgaaaa 12082740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 28066130 - 28066064
Alignment:
Q  182 gcaaacactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    ||||||| |||||||||| | |||||||||||| ||||||||||||| |||||||||| ||||||||    
T  28066130 gcaaacattgaacaaatcagtcattgtttcaaacctacaccataaaatattaaacaatcaatgaaaa 28066064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 7062113 - 7062052
Alignment:
Q  187 cactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    |||||||||||| | || |||||||| ||||||||||||| |||||||||||| ||||||||    
T  7062113 cactgaacaaattgtccgttgtttcagatctacaccataagaaattaaacaattaatgaaaa 7062052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 149960 - 149897
Alignment:
Q  185 aacactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    ||||||||||||||||| ||||||||| || ||||||| | | |||||||||||| ||||||||    
T  149960 aacactgaacaaatcggtcattgtttcgaacctacaccgttagaaattaaacaatcaatgaaaa 149897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 26926384 - 26926325
Alignment:
Q  189 ctgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    |||||||||| |  |||||||||| ||||||||||||| |||||||||||| ||||||||    
T  26926384 ctgaacaaattgtgcattgtttcagatctacaccataagaaattaaacaatcaatgaaaa 26926325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 7066599 - 7066546
Alignment:
Q  187 cactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaata 240  Q
    |||||||||||| | ||||||||||| |||||||| |||| |||||||||||||    
T  7066599 cactgaacaaattgtccattgtttcagatctacactataagaaattaaacaata 7066546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 16886829 - 16886886
Alignment:
Q  191 gaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    |||||||| | ||||||||||| ||||||||||||| ||||||||||||  |||||||    
T  16886829 gaacaaattgtccattgtttcatatctacaccataagaaattaaacaatcgatgaaaa 16886886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 239
Target Start/End: Complemental strand, 3924674 - 3924639
Alignment:
Q  204 attgtttcaaatctacaccataaaaaattaaacaat 239  Q
    ||||||| ||||||||||||||||||||||||||||    
T  3924674 attgttttaaatctacaccataaaaaattaaacaat 3924639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 5282539 - 5282585
Alignment:
Q  202 ccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    ||||||||||| |||||||| |||||| |||||||||| ||||||||    
T  5282539 ccattgtttcagatctacacaataaaacattaaacaatcaatgaaaa 5282585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 11824565 - 11824498
Alignment:
Q  185 aacactgaacaaatcggccattgtttcaaatcta----caccataaaaaattaaacaataaatgaaaa 248  Q
    ||||||||||||||| | |||||||||||| |||    ||||||||||| ||||||||| ||||||||    
T  11824565 aacactgaacaaatcagtcattgtttcaaacctacctgcaccataaaaatttaaacaatcaatgaaaa 11824498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 12309930 - 12309988
Alignment:
Q  190 tgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    ||||||||| | ||||||||| | |||||||| |||| |||||||||||| ||||||||    
T  12309930 tgaacaaattgtccattgtttgagatctacactataagaaattaaacaatcaatgaaaa 12309988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 2356156 - 2356120
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  2356156 cggccattgcttcaaatctacaccataagaaattaaa 2356120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 21187636 - 21187672
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  21187636 cggccattgtttcaaatctacacaataagaaattaaa 21187672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 41048657 - 41048621
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  41048657 cggccattgtttcaaatctacacaataagaaattaaa 41048621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 48270515 - 48270479
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  48270515 cggccattgtttcaaatctacacaataagaaattaaa 48270479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 20242460 - 20242526
Alignment:
Q  182 gcaaacactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    |||||||||||||||||||| |||||||||||| |||||||||||| || |||||||| ||||||||    
T  20242460 gcaaacactgaacaaatcggtcattgtttcaaacctacaccataaagaagtaaacaatcaatgaaaa 20242526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 22136444 - 22136510
Alignment:
Q  182 gcaaacactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    |||||||||||||||||||| |||||||||||| |||||||||||| || |||||||| ||||||||    
T  22136444 gcaaacactgaacaaatcggtcattgtttcaaacctacaccataaagaagtaaacaatcaatgaaaa 22136510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 17465601 - 17465667
Alignment:
Q  182 gcaaacactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    |||||||||||||||||||| |||||||||||| ||| |||||||||| ||||||||| | ||||||    
T  17465601 gcaaacactgaacaaatcggtcattgtttcaaacctataccataaaaatttaaacaatcattgaaaa 17465667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 20244048 - 20243990
Alignment:
Q  190 tgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    ||||||||| | |||||||||||||| |||||||||| |||||||||||| ||||||||    
T  20244048 tgaacaaattgtccattgtttcaaatttacaccataagaaattaaacaatcaatgaaaa 20243990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 22138032 - 22137974
Alignment:
Q  190 tgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    ||||||||| | |||||||||||||| |||||||||| |||||||||||| ||||||||    
T  22138032 tgaacaaattgtccattgtttcaaatttacaccataagaaattaaacaatcaatgaaaa 22137974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 5571010 - 5570952
Alignment:
Q  190 tgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    ||||||||| | ||||||||||| ||||| ||||||| |||||||||||| ||||||||    
T  5571010 tgaacaaattgtccattgtttcagatctataccataagaaattaaacaatcaatgaaaa 5570952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 33718943 - 33718876
Alignment:
Q  185 aacactgaacaaatcggccattgtttcaaat----ctacaccataaaaaattaaacaataaatgaaaa 248  Q
    ||||||||||||||||| ||||||||||||     ||||| |||||||||||||||||| ||||||||    
T  33718943 aacactgaacaaatcggtcattgtttcaaacttacctacatcataaaaaattaaacaatcaatgaaaa 33718876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 34132447 - 34132400
Alignment:
Q  203 cattgtttcaaatctacaccataa--aaaattaaacaataaatgaaaa 248  Q
    ||||||||||||||||||||||||  ||||||||||||| ||||||||    
T  34132447 cattgtttcaaatctacaccataaaaaaaattaaacaatcaatgaaaa 34132400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 18744307 - 18744353
Alignment:
Q  203 cattgtttcaaatctacaccata-aaaaattaaacaataaatgaaaa 248  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||||    
T  18744307 cattgtttcaaatctacactatagaaaaattaaacaatcaatgaaaa 18744353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 3766061 - 3766097
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  3766061 cggccattgtttcaaatctacacaataagaaattaaa 3766097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 29066428 - 29066392
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  29066428 cggccattgtttcaaatctacacaataagaaattaaa 29066392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 29075441 - 29075405
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  29075441 cggccattgtttcaaatctacacaataagaaattaaa 29075405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 29080205 - 29080169
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  29080205 cggccattgtttcaaatctacacaataagaaattaaa 29080169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 29110410 - 29110374
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  29110410 cggccattgtttcaaatctacacaataagaaattaaa 29110374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 32027968 - 32028004
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  32027968 cggccattgtttcaaatctacacaataagaaattaaa 32028004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 32038027 - 32038063
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  32038027 cggccattgtttcaaatctacacaataagaaattaaa 32038063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 19262711 - 19262769
Alignment:
Q  190 tgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  19262711 tgaacaaagcggccattgtttcaaatctacactataaaaaattaaacaatcaatgaaaa 19262769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 15471400 - 15471334
Alignment:
Q  182 gcaaacactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||| | || ||| ||||||||    
T  15471400 gcaaacactgaacaaatcggtcattgtttcaaatctacagcataaaaaaattaaaaatcaatgaaaa 15471334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 31452075 - 31452137
Alignment:
Q  182 gcaaacactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatg 244  Q
    |||||||||||||||||||| | ||||||||||  ||||||||||||| ||||||||| ||||    
T  31452075 gcaaacactgaacaaatcggtcgttgtttcaaacatacaccataaaaagttaaacaatcaatg 31452137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 27259804 - 27259743
Alignment:
Q  187 cactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    ||||||||||||   ||||||||||| ||||||||||||| |||||||||||| ||||||||    
T  27259804 cactgaacaaattatccattgtttcagatctacaccataagaaattaaacaatcaatgaaaa 27259743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 34336076 - 34336017
Alignment:
Q  189 ctgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    |||||||||| | ||||||||||| ||||||| ||||| |||||||||||| ||||||||    
T  34336076 ctgaacaaattgtccattgtttcagatctacaacataagaaattaaacaatcaatgaaaa 34336017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 48707249 - 48707308
Alignment:
Q  189 ctgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    |||||||||| | | ||||||||| ||||||||||||| ||| |||||||| ||||||||    
T  48707249 ctgaacaaattgactattgtttcatatctacaccataagaaaataaacaatcaatgaaaa 48707308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 14772864 - 14772919
Alignment:
Q  182 gcaaacactgaacaaatcggccattgtttcaa----atctacaccataaaaaatta 233  Q
    |||||||||||||||||||| |||||||||||    | ||||||||||||||||||    
T  14772864 gcaaacactgaacaaatcggtcattgtttcaaacctacctacaccataaaaaatta 14772919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 25803917 - 25803958
Alignment:
Q  207 gtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    |||||| ||||||||||||| |||||||||||| ||||||||    
T  25803917 gtttcagatctacaccataagaaattaaacaatcaatgaaaa 25803958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 26793182 - 26793137
Alignment:
Q  190 tgaacaaatcggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||| | ||||||||||| ||||||||||||| ||||||||    
T  26793182 tgaacaaattgtccattgtttcatatctacaccataagaaattaaa 26793137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 6435637 - 6435601
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  6435637 cggccattgtttcaaatctacacaataagaaattaaa 6435601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 29435838 - 29435802
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  29435838 cggccattgtttcaaatctacacaataagaaattaaa 29435802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 29762562 - 29762598
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  29762562 cggccattgtttcaaatctacacaataagaaattaaa 29762598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 44597566 - 44597530
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  44597566 cggccattgtttcaaatctacacaataagaaattaaa 44597530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 49396569 - 49396533
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  49396569 cggccattgtttcaaatctacacaataagaaattaaa 49396533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 17267631 - 17267690
Alignment:
Q  189 ctgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    ||||| |||||||||||||||||| |||||||| ||||||||||||||||| ||||||||    
T  17267631 ctgaaaaaatcggccattgtttcatatctacactataaaaaattaaacaatcaatgaaaa 17267690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 55391103 - 55391162
Alignment:
Q  189 ctgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    |||||||||| | ||||||||||||||||||||||||| |||||||||||| || |||||    
T  55391103 ctgaacaaattgtccattgtttcaaatctacaccataagaaattaaacaatcaacgaaaa 55391162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 43688265 - 43688207
Alignment:
Q  190 tgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    ||||||||| ||||||||||| | ||||||||||||| ||| |||||||| ||||||||    
T  43688265 tgaacaaattggccattgtttaagatctacaccataagaaaataaacaatcaatgaaaa 43688207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 2428366 - 2428330
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||||||||||||    
T  2428366 cggccattgtttcaaatctacacaataaaaaattaaa 2428330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 1638951 - 1638996
Alignment:
Q  203 cattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    |||||||||| || |||||||||| |||||||||||| ||||||||    
T  1638951 cattgtttcagatttacaccataagaaattaaacaatcaatgaaaa 1638996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 7954082 - 7954046
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  7954082 cggccattgcttcaaatctacaccataagaaattaaa 7954046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 19453569 - 19453605
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  19453569 cggccattgtttcaaatctacacaataagaaattaaa 19453605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 20378219 - 20378263
Alignment:
Q  191 gaacaaatcggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    |||||||||||||||||||||| || ||||| |||| ||||||||    
T  20378219 gaacaaatcggccattgtttcagatatacacaataagaaattaaa 20378263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 24702611 - 24702647
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  24702611 cggccattgtttcaaatctacacaataagaaattaaa 24702647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 41577807 - 41577771
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  41577807 cggccattgtttcaaatctacacaataagaaattaaa 41577771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 41803782 - 41803746
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  41803782 cggccattgtttcaaatctacacaataagaaattaaa 41803746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 45100805 - 45100841
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  45100805 cggccattgtttcaaatctacacaataagaaattaaa 45100841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 49610368 - 49610332
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  49610368 cggccattgtttcaaatctacacaataagaaattaaa 49610332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 12505046 - 12505111
Alignment:
Q  182 gcaaacactgaacaaatcggccattgtttcaaatctacaccataaaaaattaaacaataaatgaaaa 248  Q
    |||||| ||||||||||| ||||||| |||||||||||||||| |||||||||||||| ||||||||    
T  12505046 gcaaaccctgaacaaatcagccattgcttcaaatctacaccat-aaaaattaaacaatcaatgaaaa 12505111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 26139932 - 26139886
Alignment:
Q  193 acaaatcggccattgtttcaaatctacaccataaaaaattaaacaat 239  Q
    |||||| |||||||||||||||||||||  |||||||||||||||||    
T  26139932 acaaattggccattgtttcaaatctacataataaaaaattaaacaat 26139886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 27783327 - 27783281
Alignment:
Q  190 tgaacaaatcggccattgtttcaaatctacaccataaaaaattaaac 236  Q
    ||||||||| | ||||||||||| ||||||||||||| |||||||||    
T  27783327 tgaacaaattgtccattgtttcagatctacaccataagaaattaaac 27783281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 42603330 - 42603293
Alignment:
Q  198 tcggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  42603330 tcggccattgtttcaaatctacacaataagaaattaaa 42603293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 2416790 - 2416754
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  2416790 cggccattgtttcaaatctacacaataagaaattaaa 2416754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 3589585 - 3589629
Alignment:
Q  191 gaacaaatcggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||| ||| ||||||||||||||||||||| |||| ||||||||    
T  3589585 gaacatatcagccattgtttcaaatctacacaataagaaattaaa 3589629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 18440634 - 18440670
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  18440634 cggccattgtttcaaatctacacaataagaaattaaa 18440670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 24861218 - 24861182
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  24861218 cggccattgtttcaaatctacacaataagaaattaaa 24861182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 26452200 - 26452164
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  26452200 cggccattgtttcaaatctacacgataagaaattaaa 26452164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 44943419 - 44943455
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    |||| |||||||||||||||||| |||||||||||||    
T  44943419 cggctattgtttcaaatctacacaataaaaaattaaa 44943455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 39742 - 39706
Alignment:
Q  199 cggccattgtttcaaatctacaccataaaaaattaaa 235  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  39742 cggccattgcttcaaatctacaccataagaaattaaa 39706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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