View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8247_low_6 (Length: 278)
Name: NF8247_low_6
Description: NF8247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8247_low_6 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 5601897 - 5601622
Alignment:
| Q |
1 |
tatggagaccatcataaagtattccatgaggcaagaaaactaaatgacttggtgataaggttgaaaattcatttacaaaactagtgataaagatggtcct |
100 |
Q |
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| T |
5601897 |
tatggagaccatcataaagtattccatgaggcaagaaaactaaatgacttggtgataaggttgaaaattcatttacaaaactagtgataaagatggtcct |
5601798 |
T |
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| Q |
101 |
tcaagaaagaaataagatctcgtagaagtatataaggagtgatattcttcactttataagtccgttttgtaaagataaattaaactcaatataaacttat |
200 |
Q |
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| T |
5601797 |
tcaagaaagaaataagatctcgtagaagtatataaggagtgatattcttcactttataagttcgttttgtaaagataaattaaactcaatataaacttat |
5601698 |
T |
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| Q |
201 |
aataggctaatttcaactttagcctttatatatatgtttgtattttgacaaagcctttatatgtttgttgagcatata |
278 |
Q |
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| T |
5601697 |
aataggctaatttcaactttagcctttat--atatgtttgtattttgacaaagcctttatatgtttgttgagcatata |
5601622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 5638723 - 5638998
Alignment:
| Q |
1 |
tatggagaccatcataaagtattccatgaggcaagaaaactaaatgacttggtgataaggttgaaaattcatttacaaaactagtgataaagatggtcct |
100 |
Q |
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| T |
5638723 |
tatggagaccatcataaagtattccatgaggcaagaaaactaaatgacttggtgataaggttgaaaattcatttacaaaactagtgataaagatggtcct |
5638822 |
T |
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| Q |
101 |
tcaagaaagaaataagatctcgtagaagtatataaggagtgatattcttcactttataagtccgttttgtaaagataaattaaactcaatataaacttat |
200 |
Q |
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| T |
5638823 |
tcaagaaagaaataagatctcgtagaagtatataaggagtgatattcttcactttataagttcgttttgtaaagataaattaaactcaatataaacttat |
5638922 |
T |
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| Q |
201 |
aataggctaatttcaactttagcctttatatatatgtttgtattttgacaaagcctttatatgtttgttgagcatata |
278 |
Q |
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| T |
5638923 |
aataggctaatttcaactttagcctt--tatatatgtttgtattttgacaaagcctttatatgtttgttgagcatata |
5638998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 5652030 - 5652079
Alignment:
| Q |
127 |
agtatataaggagtgatattcttcactttataagtccgttttgtaaagata |
177 |
Q |
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| T |
5652030 |
agtatataaggagtgatatt-ttcactttacaagtccattttgtaaagata |
5652079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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