View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8247_low_8 (Length: 256)

Name: NF8247_low_8
Description: NF8247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8247_low_8
NF8247_low_8
[»] chr6 (2 HSPs)
chr6 (2-235)||(15842159-15842399)
chr6 (93-235)||(14457836-14457978)
[»] scaffold0272 (1 HSPs)
scaffold0272 (75-223)||(1152-1300)
[»] chr3 (5 HSPs)
chr3 (114-234)||(21943461-21943581)
chr3 (96-172)||(47475175-47475251)
chr3 (105-169)||(49455455-49455519)
chr3 (137-223)||(26476204-26476290)
chr3 (128-173)||(9367455-9367500)
[»] chr8 (2 HSPs)
chr8 (91-235)||(29576268-29576412)
chr8 (136-225)||(31400981-31401070)
[»] chr1 (3 HSPs)
chr1 (129-235)||(10238137-10238242)
chr1 (137-236)||(21970997-21971096)
chr1 (134-226)||(24615479-24615571)
[»] chr7 (2 HSPs)
chr7 (85-235)||(6230721-6230871)
chr7 (105-235)||(12828512-12828642)
[»] chr4 (4 HSPs)
chr4 (91-229)||(13853002-13853140)
chr4 (50-236)||(29081686-29081872)
chr4 (91-226)||(55352083-55352218)
chr4 (129-169)||(9159247-9159287)
[»] chr2 (3 HSPs)
chr2 (91-202)||(38969611-38969722)
chr2 (93-150)||(14733568-14733625)
chr2 (180-223)||(33483847-33483890)
[»] scaffold0008 (1 HSPs)
scaffold0008 (91-169)||(58254-58332)
[»] chr5 (3 HSPs)
chr5 (51-150)||(10429171-10429270)
chr5 (96-202)||(3679673-3679779)
chr5 (96-236)||(19111287-19111427)


Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 15842399 - 15842159
Alignment:
Q  2 tacctcctagactaatgaacttattttc-------ttcaatctacgagcaagtaaatccaaaagcggttgccaagtcaaaactctccccagatttacccc 94  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  15842399 tacctcctagactaatgaacttattttcccaactattcaatctacgagcaagtaaatccaaaagcggttgccaagtcaaaactctccccggattttcccc 15842300  T
Q  95 taccggtaaacccaaatacttgaaaggaagacacccttcactacaattcaaaaaatcataagccatctccataaactccctcgctacattcaccccaatc 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15842299 taccggtaaacccaaatacttgaaaggaagacacccttcactacaattcagaaaatcacaagccatctccataaactccctcgctacattcaccccaatc 15842200  T
Q  195 aagcaacttttgagaaaattaaccttcaacccggatgccat 235  Q
    ||||||||||| ||||||||||||||||| |||||||||||    
T  15842199 aagcaactttttagaaaattaaccttcaatccggatgccat 15842159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 235
Target Start/End: Complemental strand, 14457978 - 14457836
Alignment:
Q  93 cctaccggtaaacccaaatacttgaaaggaagacacccttcactacaattcaaaaaatcataagccatctccataaactccctcgctacattcaccccaa 192  Q
    |||||||| |||||||| ||||||||||||| | | |||| ||||||||||||||| |   | ||||| |||||||| ||| |||| ||||| |  || |    
T  14457978 cctaccggcaaacccaagtacttgaaaggaaaaaaaccttgactacaattcaaaaagtttcacgccatatccataaattccgtcgccacattaattccca 14457879  T
Q  193 tcaagcaacttttgagaaaattaaccttcaacccggatgccat 235  Q
    |||| ||||| ||   ||||||||||||||| |||||||||||    
T  14457878 tcaaacaactcttataaaaattaaccttcaatccggatgccat 14457836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 75 - 223
Target Start/End: Complemental strand, 1300 - 1152
Alignment:
Q  75 actctccccagatttacccctaccggtaaacccaaatacttgaaaggaagacacccttcactacaattcaaaaaatcataagccatctccataaactccc 174  Q
    ||||| ||| ||||| ||| ||||||||| |||||||||||||| || ||||| ||||||||||||||||||||| || |||||||||||||||| ||||    
T  1300 actcttcccggatttgcccttaccggtaagcccaaatacttgaacgggagacagccttcactacaattcaaaaaaccacaagccatctccataaaatccc 1201  T
Q  175 tcgctacattcaccccaatcaagcaacttttgagaaaattaaccttcaa 223  Q
    || | |||||||| |||||||| |||||||| || ||||| ||||||||    
T  1200 tctccacattcactccaatcaaacaacttttaaggaaattcaccttcaa 1152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 114 - 234
Target Start/End: Original strand, 21943461 - 21943581
Alignment:
Q  114 ttgaaaggaagacacccttcactacaattcaaaaaatcataagccatctccataaactccctcgctacattcaccccaatcaagcaacttttgagaaaat 213  Q
    |||||||| || || ||||||||||||||||| |||||| |  |||| ||||||||||||||| | ||||||||||  |||||||||||||| || || |    
T  21943461 ttgaaagggaggcaaccttcactacaattcaagaaatcacacaccatttccataaactccctctccacattcacccatatcaagcaacttttaaggaagt 21943560  T
Q  214 taaccttcaacccggatgcca 234  Q
    | |||||||||||||||||||    
T  21943561 ttaccttcaacccggatgcca 21943581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 47475251 - 47475175
Alignment:
Q  96 accggtaaacccaaatacttgaaaggaagacacccttcactacaattcaaaaaatcataagccatctccataaactc 172  Q
    |||||||| ||||||||||| || || |||| ||||| ||||||||||||||||  | ||||||| |||||||||||    
T  47475251 accggtaaccccaaatacttaaacgggagactcccttgactacaattcaaaaaagtacaagccatatccataaactc 47475175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 49455519 - 49455455
Alignment:
Q  105 cccaaatacttgaaaggaagacacccttcactacaattcaaaaaatcataagccatctccataaa 169  Q
    ||||| ||||||||||||| |||||| ||||||||||||||||||| | |||||||  |||||||    
T  49455519 cccaagtacttgaaaggaatacacccctcactacaattcaaaaaattacaagccattgccataaa 49455455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 26476204 - 26476290
Alignment:
Q  137 acaattcaaaaaatcataagccatctccataaactccctcgctacattcaccccaatcaagcaacttttgagaaaattaaccttcaa 223  Q
    |||||||||||||||| ||||  | |||||||| |  ||  | |||||||| || ||||| |||||||||| |||||||||||||||    
T  26476204 acaattcaaaaaatcacaagctctatccataaaatttctacccacattcacacctatcaaacaacttttgaaaaaattaaccttcaa 26476290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 9367455 - 9367500
Alignment:
Q  128 cccttcactacaattcaaaaaatcataagccatctccataaactcc 173  Q
    ||||||||||||||||||||||||| |||||||   ||||||||||    
T  9367455 cccttcactacaattcaaaaaatcacaagccatggtcataaactcc 9367500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 235
Target Start/End: Original strand, 29576268 - 29576412
Alignment:
Q  91 cccctaccggtaaacccaaatacttgaaaggaagacacccttcactacaattcaaaaaatcataagccatctccataaactccctcgctacattcacccc 190  Q
    ||||||||||||| || | ||| || |||||||| |  ||||||| |||||| ||||| | | ||||| | ||||| |||| | | || ||||| |||||    
T  29576268 cccctaccggtaagcctagatatttaaaaggaaggctaccttcacaacaattaaaaaacttacaagccgtatccatgaacttcttagccacattgacccc 29576367  T
Q  191 aatcaagcaacttttgagaaaattaaccttcaacccggatgccat 235  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||    
T  29576368 aatcaagcaacttttcagaaaattaaccttcaacctggatgccat 29576412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 31401070 - 31400981
Alignment:
Q  136 tacaattcaaaaaatcataagccatctccataaactccctcgctacattcaccccaatcaagcaacttttgagaaaattaaccttcaacc 225  Q
    |||||||||| || ||| | |||||||||||||| ||| |||| ||||| ||||  |||||||||||||| |  |||||||| |||||||    
T  31401070 tacaattcaagaactcacacgccatctccataaaatccatcgccacatttacccttatcaagcaacttttaaagaaattaactttcaacc 31400981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 129 - 235
Target Start/End: Complemental strand, 10238242 - 10238137
Alignment:
Q  129 ccttcactacaattcaaaaaatcataagccatctccataaactccctcgctacattcaccccaatcaagcaacttttgagaaaattaaccttcaacccgg 228  Q
    |||||||||||||||||||||||  |||||||||| ||||| || ||  | ||||||||||| ||||| ||||||||  |||||||||||||||| ||||    
T  10238242 ccttcactacaattcaaaaaatcgcaagccatctcgataaaatctctttccacattcacccc-atcaaacaacttttatgaaaattaaccttcaatccgg 10238144  T
Q  229 atgccat 235  Q
    |||||||    
T  10238143 atgccat 10238137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 21971096 - 21970997
Alignment:
Q  137 acaattcaaaaaatcataagccatctccataaactccctcgctacattcaccccaatcaagcaacttttgagaaaattaaccttcaacccggatgccatt 236  Q
    |||||||||||||| | ||||||| ||||||||||||   || ||||| | ||| ||||| |||||||||| |||||||||||||||| |||| ||||||    
T  21971096 acaattcaaaaaattacaagccatatccataaactccggtgccacattaatccccatcaaacaacttttgaaaaaattaaccttcaactcggaagccatt 21970997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 24615479 - 24615571
Alignment:
Q  134 actacaattcaaaaaatcataagccatctccataaactccctcgct-acattcaccccaatcaagcaacttttgagaaaattaaccttcaaccc 226  Q
    ||||||||||||||||| | | |||||||||||||| | |||| || ||||||||||| |||||  |||| || | |||||||| |||||||||    
T  24615479 actacaattcaaaaaattacatgccatctccataaagt-cctccctcacattcacccctatcaacgaactcttaataaaattaatcttcaaccc 24615571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 235
Target Start/End: Complemental strand, 6230871 - 6230721
Alignment:
Q  85 gatttacccctaccggtaaacccaaatacttgaaaggaagacacccttcactacaattcaaaaaatcataagccatctccataaactccctcgctacatt 184  Q
    ||||| |||||| ||| ||||||||||||||||| |||||    ||||| ||||||||||||||||   | |||   ||||||||||||||  | |||||    
T  6230871 gatttgcccctatcggcaaacccaaatacttgaacggaagcattccttccctacaattcaaaaaattgcacgccgcatccataaactccctaccaacatt 6230772  T
Q  185 caccccaatcaagcaacttttgagaaaattaaccttcaacccggatgccat 235  Q
    |||||||||||||||||| ||   ||||||||| |||||||| ||| ||||    
T  6230771 caccccaatcaagcaactcttcgcaaaattaactttcaaccccgataccat 6230721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 235
Target Start/End: Original strand, 12828512 - 12828642
Alignment:
Q  105 cccaaatacttgaaaggaagacacccttcactacaattcaaaaaatcataagccatctccataaactccctcgctacattcaccccaatcaagcaacttt 204  Q
    ||||||||||| || ||||| |  |||||||||||||| || |||| | | |||||||||||||| ||  | |  ||||| ||||||||||| ||||| |    
T  12828512 cccaaatacttaaacggaaggctaccttcactacaatttaagaaataacacgccatctccataaagtcatttggaacatttaccccaatcaaacaactct 12828611  T
Q  205 tgagaaaattaaccttcaacccggatgccat 235  Q
    | || ||||||| ||| | ||| ||||||||    
T  12828612 taaggaaattaatcttgagccccgatgccat 12828642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 229
Target Start/End: Complemental strand, 13853140 - 13853002
Alignment:
Q  91 cccctaccggtaaacccaaatacttgaaaggaagacacccttcactacaattcaaaaaatcataagccatctccataaactccctcgctacattcacccc 190  Q
    |||| |||||||| ||||||||||| || ||||| | ||||| ||||||||||||||| ||| |||||||| ||||||| |||  ||  ||||| |||||    
T  13853140 cccccaccggtaatcccaaatacttaaatggaagcctcccttgactacaattcaaaaagtcacaagccatccccataaattcctccggcacatttacccc 13853041  T
Q  191 aatcaagcaacttttgagaaaattaaccttcaacccgga 229  Q
    ||||||  |||| || | |||||||| |||||| |||||    
T  13853040 aatcaaagaactcttaaaaaaattaatcttcaaaccgga 13853002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 236
Target Start/End: Complemental strand, 29081872 - 29081686
Alignment:
Q  50 atccaaaagcggttgccaagtcaaaactctccccagatttacccctaccggtaaacccaaatacttgaaaggaagacacccttcactacaattcaaaaaa 149  Q
    ||||| |||| |||||||||| |||||||| ||| ||||| | || |||||||| || | ||| |  ||||| || |  |||| |||||||||||||||     
T  29081872 atccagaagcagttgccaagtaaaaactctacccggatttgctcccaccggtaagcctagatagtgaaaagggaggctaccttgactacaattcaaaaac 29081773  T
Q  150 tcataagccatctccataaactccctcgctacattcaccccaatcaagcaacttttgagaaaattaaccttcaacccggatgccatt 236  Q
    ||||||||||| |||||||| || ||  | ||||| | ||| ||||||||||| || || ||||| |||||||| || || ||||||    
T  29081772 tcataagccatatccataaagtctctatccacatttatccccatcaagcaactcttaaggaaattcaccttcaatccagacgccatt 29081686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 226
Target Start/End: Complemental strand, 55352218 - 55352083
Alignment:
Q  91 cccctaccggtaaacccaaatacttgaaaggaagacacccttcactacaattcaaaaaatcataagccatctccataaactccctcgctacattcacccc 190  Q
    |||| |||||||||||||| | ||| || || | | | ||||| |||||||||| |||||   | |||  |||||||||||||||  |||||||||| ||    
T  55352218 ccccaaccggtaaacccaagtgcttaaatggtaaagagccttccctacaattcataaaattgcacgccgcctccataaactccctttctacattcactcc 55352119  T
Q  191 aatcaagcaacttttgagaaaattaaccttcaaccc 226  Q
    |||||||||||| |||  ||| ||||||||||||||    
T  55352118 aatcaagcaactcttggcaaagttaaccttcaaccc 55352083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 9159247 - 9159287
Alignment:
Q  129 ccttcactacaattcaaaaaatcataagccatctccataaa 169  Q
    |||||||||||||||||||||| | ||||||||||||||||    
T  9159247 ccttcactacaattcaaaaaattacaagccatctccataaa 9159287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 38969722 - 38969611
Alignment:
Q  91 cccctaccggtaaacccaaatacttgaaaggaagacacccttcactacaattcaaaaaatcataagccatctccataaactccctcgctacattcacccc 190  Q
    |||| |||||||| |||||||||||||| |||||| | ||||| ||||| |||| ||||| | | |||  |||||||||||||||  | |||||||||||    
T  38969722 ccccaaccggtaagcccaaatacttgaacggaagagagccttctctacagttcataaaattacacgccgcctccataaactcccttccaacattcacccc 38969623  T
Q  191 aatcaagcaact 202  Q
    |||||| |||||    
T  38969622 aatcaaacaact 38969611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 14733568 - 14733625
Alignment:
Q  93 cctaccggtaaacccaaatacttgaaaggaagacacccttcactacaattcaaaaaat 150  Q
    |||||||| | ||||||||||||||||||||| | ||| ||||||||||| |||||||    
T  14733568 cctaccggaagacccaaatacttgaaaggaaggctcccctcactacaatttaaaaaat 14733625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 33483890 - 33483847
Alignment:
Q  180 acattcaccccaatcaagcaacttttgagaaaattaaccttcaa 223  Q
    ||||||||||| |||||||||||||| | |||||||||||||||    
T  33483890 acattcaccccgatcaagcaacttttcacaaaattaaccttcaa 33483847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 58332 - 58254
Alignment:
Q  91 cccctaccggtaaacccaaatacttgaaaggaagacacccttcactacaattcaaaaaatcataagccatctccataaa 169  Q
    |||| |||||||| |||||||||||||| || ||||  |||||||||||||| ||||||||| | |||||  |||||||    
T  58332 cccccaccggtaaccccaaatacttgaacgggagactaccttcactacaattaaaaaaatcacacgccattgccataaa 58254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 10429270 - 10429171
Alignment:
Q  51 tccaaaagcggttgccaagtcaaaactctccccagatttacccctaccggtaaacccaaatacttgaaaggaagacacccttcactacaattcaaaaaat 150  Q
    ||||||||||||| ||||||   |||||| ||| ||||  | |||||||| || ||||||||   |||||| |||| ||||| |||||||||||||||||    
T  10429270 tccaaaagcggttcccaagttgcaactctacccggattacctcctaccggcaaccccaaataacggaaagggagactcccttgactacaattcaaaaaat 10429171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 3679673 - 3679779
Alignment:
Q  96 accggtaaacccaaatacttgaaaggaagacacccttcactacaattcaaaaaatcataagccatctccataaactccctcgctacattcaccccaatca 195  Q
    |||||||| |||||||| ||||| || ||| | ||||| |||||||||| |||||   |||||  ||||||| |||| ||  | ||||||||||||||||    
T  3679673 accggtaagcccaaatatttgaagggtagagaaccttccctacaattcataaaattgcaagccgcctccatacactctctaccaacattcaccccaatca 3679772  T
Q  196 agcaact 202  Q
    | |||||    
T  3679773 aacaact 3679779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 236
Target Start/End: Original strand, 19111287 - 19111427
Alignment:
Q  96 accggtaaacccaaatacttgaaaggaagacacccttcactacaattcaaaaaatcataagccatctccataaactccctcgctacattcaccccaatca 195  Q
    |||||||| ||||| ||||| ||||| ||  ||| ||| |||||||||||||||||| | ||||| | |||||| ||   ||  |||||||| || || |    
T  19111287 accggtaaccccaagtacttaaaagggagtgacctttcgctacaattcaaaaaatcacatgccatattcataaattcaaccgggacattcacgcccataa 19111386  T
Q  196 agcaacttttgagaaaattaaccttcaacccggatgccatt 236  Q
     |||||| |||| || |||||| ||||| || |||||||||    
T  19111387 ggcaactcttgaaaatattaactttcaaacccgatgccatt 19111427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University