View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8248_high_13 (Length: 334)

Name: NF8248_high_13
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8248_high_13
NF8248_high_13
[»] chr6 (49 HSPs)
chr6 (1-317)||(26805560-26805882)
chr6 (11-317)||(27674374-27674680)
chr6 (13-118)||(27695403-27695508)
chr6 (8-117)||(27715331-27715440)
chr6 (8-317)||(27589947-27590251)
chr6 (217-317)||(27608135-27608232)
chr6 (210-317)||(27681995-27682099)
chr6 (218-317)||(27695596-27695692)
chr6 (218-317)||(27715526-27715622)
chr6 (1-55)||(27607943-27607997)
chr6 (8-97)||(27682206-27682295)
chr6 (238-316)||(26626168-26626246)
chr6 (238-316)||(26732145-26732223)
chr6 (233-316)||(26638443-26638526)
chr6 (233-316)||(26744409-26744492)
chr6 (233-312)||(31287627-31287706)
chr6 (8-58)||(27657544-27657594)
chr6 (7-47)||(25486669-25486709)
chr6 (230-316)||(26952644-26952727)
chr6 (219-316)||(26851567-26851661)
chr6 (9-47)||(26059224-26059262)
chr6 (9-47)||(26079194-26079232)
chr6 (220-316)||(26659014-26659107)
chr6 (220-316)||(26764985-26765078)
chr6 (218-316)||(27662398-27662496)
chr6 (233-282)||(25077083-25077132)
chr6 (7-47)||(25514162-25514202)
chr6 (227-313)||(25548016-25548099)
chr6 (227-313)||(25582743-25582826)
chr6 (226-282)||(26061634-26061690)
chr6 (226-282)||(26081604-26081660)
chr6 (224-313)||(26058955-26059041)
chr6 (224-313)||(26078925-26079011)
chr6 (8-47)||(26146296-26146335)
chr6 (243-282)||(26826951-26826990)
chr6 (255-316)||(26887831-26887889)
chr6 (13-47)||(25583015-25583049)
chr6 (244-316)||(28789405-28789474)
chr6 (224-313)||(25486406-25486492)
chr6 (233-280)||(25491190-25491237)
chr6 (241-313)||(25513911-25513980)
chr6 (244-282)||(27528708-27528746)
chr6 (238-280)||(27657786-27657828)
chr6 (220-316)||(28795429-28795522)
chr6 (153-191)||(31287742-31287780)
chr6 (234-282)||(26649545-26649593)
chr6 (234-282)||(26755513-26755561)
chr6 (230-316)||(26962137-26962220)
chr6 (154-190)||(27682113-27682149)
[»] chr8 (2 HSPs)
chr8 (153-317)||(29270797-29270958)
chr8 (1-55)||(29270663-29270717)
[»] chr1 (7 HSPs)
chr1 (212-317)||(265345-265447)
chr1 (9-76)||(265145-265212)
chr1 (243-276)||(28124682-28124715)
chr1 (243-276)||(28129713-28129746)
chr1 (230-316)||(26139027-26139110)
chr1 (154-191)||(265293-265330)
chr1 (9-57)||(26139328-26139376)
[»] scaffold0349 (2 HSPs)
scaffold0349 (218-317)||(16323-16419)
scaffold0349 (8-117)||(16505-16613)
[»] chr2 (1 HSPs)
chr2 (238-316)||(17990182-17990257)
[»] chr4 (10 HSPs)
chr4 (219-279)||(18652546-18652606)
chr4 (219-279)||(18676628-18676688)
chr4 (219-279)||(18696477-18696537)
chr4 (219-279)||(18721142-18721202)
chr4 (11-58)||(18686451-18686498)
chr4 (11-58)||(18696257-18696304)
chr4 (221-279)||(18728569-18728627)
chr4 (9-58)||(18676409-18676458)
chr4 (11-47)||(18652350-18652386)
chr4 (219-279)||(18686671-18686731)
[»] scaffold0419 (1 HSPs)
scaffold0419 (244-316)||(10555-10624)
[»] scaffold0277 (3 HSPs)
scaffold0277 (244-316)||(1759-1828)
scaffold0277 (244-316)||(10725-10794)
scaffold0277 (18-58)||(1524-1564)


Alignment Details
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 49)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 26805882 - 26805560
Alignment:
Q  1 aatcatccaacttaaactccacatggatccattcatttttcaaaagttctttctccat---attatacatgtattgtcttttacagtgttcattcaattt 97  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||| |||| |||||   || |||    |||||||||  || | |||||||| ||||    
T  26805882 aatcatccaacttaagctccacatggatccattcatttttcgaaagtactttgtccattatatcatagtcatattgtcttccactgagttcattccattt 26805783  T
Q  98 ca---tatcaaacaaagttgtatgctcccagtacacataggtaaagaggcac---gcatcttctatctcaatttcatatccattcacaaaataattgact 191  Q
    ||   ||| ||||||| |||| |||| | ||||||||||| ||||  || |    | | | |||| ||||||||||||||||||||||||||||||||||    
T  26805782 cagggtatgaaacaaacttgtctgcttcaagtacacatagctaaactggtaaaaagaaccatctaactcaatttcatatccattcacaaaataattgact 26805683  T
Q  192 ccaaagcaatcatccccatcattggcttccggaagaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtccct 291  Q
    ||  ||  | |  ||||||  ||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    ||||||    
T  26805682 cctgagtcagctaccccatttttgccttccggaagaataaaaatacatgttatagaagggatttctttacgaaaccagaaagaaattgtg---ggtccct 26805586  T
Q  292 tgcattggtgctcaaaccaatctggt 317  Q
    ||| ||||||||||||||||||||||    
T  26805585 tgctttggtgctcaaaccaatctggt 26805560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 27674374 - 27674680
Alignment:
Q  11 cttaaactccacatggatccattcatttttcaaaagttctttctccatattatacatgtattgtcttttacagtgttcattcaatttca---tatcaaac 107  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||  |||||    |||| ||||||| | ||||||||||||||    ||| ||||    
T  27674374 cttaaactccacatggatccattcatttttcaaaagtcctttctccattatatactcaaattgccttttaccgagttcattcaatttcggggtatgaaac 27674473  T
Q  108 aaagttgtatgctcccagtacacataggtaaagaggcacgcatcttctatctcaatttcatatccattcacaaaataattgactccaaagcaatcatccc 207  Q
    ||| |||||||||   ||||||||||| ||||| ||     ||  ||||||||||||||||||||||||||||||||||||||||    |  | |   ||    
T  27674474 aaatttgtatgcttaaagtacacatagctaaagcggggacaataatctatctcaatttcatatccattcacaaaataattgactcttgtgtcagccgacc 27674573  T
Q  208 catcattggcttccggaagaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaa 307  Q
     || |||| |||||||| ||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||   | |||| ||| ||||||||||||    
T  27674574 aattattgccttccggaggaatacaaatataagtcatagaagggatttctttacgaaaccagaaagaaattgtg---tctcccctgctttggtgctcaaa 27674670  T
Q  308 ccaatctggt 317  Q
    ||||||||||    
T  27674671 ccaatctggt 27674680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 27695403 - 27695508
Alignment:
Q  13 taaactccacatggatccattcatttttcaaaagttctttctccatattatacatgtattgtcttttacagtgttcattcaatttcatatcaaacaaagt 112  Q
    ||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||| ||||| ||||||| |||| | |||||||||||||||||||||    
T  27695403 taaactccacatggatccattcacttttcaaaagtcctttgtccatattatacatgtgttgtcctttacagagttcttccaatttcatatcaaacaaagt 27695502  T
Q  113 tgtatg 118  Q
    | ||||    
T  27695503 tatatg 27695508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 27715331 - 27715440
Alignment:
Q  8 caacttaaactccacatggatccattcatttttcaaaagttctttctccatattatacatgtattgtcttttacagtgttcattcaatttcatatcaaac 107  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||   |||||||||||||   |||||| ||||||||||| || |    
T  27715331 caacttaaactccacatggatccattcacttttcaaaagtcctttgtccatattatactcatattgtcttttacctagttcatacaatttcatatgaatc 27715430  T
Q  108 aaagttgtat 117  Q
    ||||||||||    
T  27715431 aaagttgtat 27715440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 8 - 317
Target Start/End: Original strand, 27589947 - 27590251
Alignment:
Q  8 caacttaaactccacatggatccattcatttttcaaaagttctttctccatattatacatgtattgtcttttacagtgttcattcaatttca---tatca 104  Q
    ||||||||| |||||||||||||||||||||||||||||| |||| |||||  |||||    |||||||||||| | ||||||||||||||    ||| |    
T  27589947 caacttaaattccacatggatccattcatttttcaaaagtcctttgtccattatatactcaaattgtcttttactgagttcattcaatttcggggtatga 27590046  T
Q  105 aacaaagttgtatgctcccagtacacataggtaaagaggcacgcatcttctatctcaatttcatatccattcacaaaataattgactccaaagcaatcat 204  Q
    |||||| |||||||||    |||||||||| ||||| ||     ||  |||||||     |||||| ||||||||||| |||||||||    |  | |      
T  27590047 aacaaatttgtatgcttaaggtacacatagctaaagcggtgacaataatctatct-----tcatattcattcacaaaacaattgactcttgtgacagccg 27590141  T
Q  205 ccccatcattggcttccggaagaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctc 304  Q
     || || |||| |||| | | ||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||   | |||| ||| |||||||||    
T  27590142 accaattattgccttctgtaggaatacaaatataagtcatagaagggatttctttacgaaaccagaaagaaattgtg---tctcccctgctttggtgctc 27590238  T
Q  305 aaaccaatctggt 317  Q
    |||||||||||||    
T  27590239 aaaccaatctggt 27590251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 217 - 317
Target Start/End: Original strand, 27608135 - 27608232
Alignment:
Q  217 cttccggaagaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatctgg 316  Q
    |||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| ||||    ||||| ||| |||||||||||||||||||||    
T  27608135 cttccggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaagtgtg---agtcccctgctttggtgctcaaaccaatctgg 27608231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 210 - 317
Target Start/End: Complemental strand, 27682099 - 27681995
Alignment:
Q  210 tcattggcttccggaagaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaacc 309  Q
    |||||| ||| |||||||||||| |||||||| || ||||||||||||||||||||||||||||||||| ||    ||||| ||| ||||||||||||||    
T  27682099 tcattgcctttcggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatg---ggtcccctgctttggtgctcaaacc 27682003  T
Q  310 aatctggt 317  Q
    ||||||||    
T  27682002 aatctggt 27681995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 218 - 317
Target Start/End: Original strand, 27695596 - 27695692
Alignment:
Q  218 ttccggaagaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatctggt 317  Q
    |||||||||||||||||||||||  |||||||||||||||||| ||||||| ||||||||||||   | |||| ||| ||||||||||||||||||||||    
T  27695596 ttccggaagaataaaaatacaagatatagaagggatttctttatgaaaccaaaaagaaattgtg---tctcccctgctttggtgctcaaaccaatctggt 27695692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 218 - 317
Target Start/End: Original strand, 27715526 - 27715622
Alignment:
Q  218 ttccggaagaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatctggt 317  Q
    |||||||| |||||  |||||||| |||||||||||||||||||||||||||||||||||||||    ||||| ||| ||||||||||||||||||||||    
T  27715526 ttccggaaaaataattatacaagttatagaagggatttctttacgaaaccagaaagaaattgtg---ggtcccctgctttggtgctcaaaccaatctggt 27715622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27607943 - 27607997
Alignment:
Q  1 aatcatccaacttaaactccacatggatccattcatttttcaaaagttctttctc 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27607943 aatcatccaacttaaactccacatggatccattcatttttcaaaagttctttctc 27607997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 27682295 - 27682206
Alignment:
Q  8 caacttaaactccacatggatccattcatttttcaaaagttctttctccatattatacatgtattgtcttttacagtgttcattcaattt 97  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||  | ||||| |||||  | |||||||||||||    
T  27682295 caacttaaactccacatagatccattcatttttcaaaagtcctttctctatattatactcgcattgtgttttaatgagttcattcaattt 27682206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 238 - 316
Target Start/End: Complemental strand, 26626246 - 26626168
Alignment:
Q  238 aagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatctgg 316  Q
    |||||||||||||||| | ||||||||||||||||||||||||||| |||||| ||  ||| ||||| |||||||||||    
T  26626246 aagtaatagaagggatctttttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctgg 26626168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 238 - 316
Target Start/End: Complemental strand, 26732223 - 26732145
Alignment:
Q  238 aagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatctgg 316  Q
    |||||||||||||||| | ||||||||||||||||||||||||||| |||||| ||  ||| ||||| |||||||||||    
T  26732223 aagtaatagaagggatctttttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctgg 26732145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 316
Target Start/End: Complemental strand, 26638526 - 26638443
Alignment:
Q  233 aatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatctgg 316  Q
    |||| |||||||||||||||| | |||||||||||||||||||||||||   |||||| ||| ||| ||||| |||||||||||    
T  26638526 aatagaagtaatagaagggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctgg 26638443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 316
Target Start/End: Complemental strand, 26744492 - 26744409
Alignment:
Q  233 aatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatctgg 316  Q
    |||| |||||||||||||||| | |||||||||||||||||||||||||   |||||| ||| ||| ||||| |||||||||||    
T  26744492 aatagaagtaatagaagggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctgg 26744409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 31287706 - 31287627
Alignment:
Q  233 aatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaat 312  Q
    |||| |||||||||||||||| | ||||||||||||||||| ||||||| | |||||| ||  |||||||||||||||||    
T  31287706 aatataagtaatagaagggatctttttacgaaaccagaaagtaattgtgctttgtcccctgatttggtgctcaaaccaat 31287627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 27657544 - 27657594
Alignment:
Q  8 caacttaaactccacatggatccattcatttttcaaaagttctttctccat 58  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  27657544 caacttaagctccacatggatccattcatttttcaaaagttctttgtccat 27657594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 25486709 - 25486669
Alignment:
Q  7 ccaacttaaactccacatggatccattcatttttcaaaagt 47  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25486709 ccaacttaaactccacatggatccattcatttttcaaaagt 25486669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 316
Target Start/End: Complemental strand, 26952727 - 26952644
Alignment:
Q  230 aaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatctgg 316  Q
    |||||||||||| ||||||||||| | | |||||||||||||||||||||||   | |||| ||  |||||||||||||||||||||    
T  26952727 aaaaatacaagttatagaagggatctttctacgaaaccagaaagaaattgtg---tctcccctggtttggtgctcaaaccaatctgg 26952644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 316
Target Start/End: Complemental strand, 26851661 - 26851567
Alignment:
Q  219 tccggaagaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatctgg 316  Q
    ||||||| ||||| |||||| || ||||||||||| | ||||||||||||||| |||||||||||   | || ||| ||||||||| |||||||||||    
T  26851661 tccggaacaataataatacatgttatagaagggatctttttacgaaaccagaaggaaattgtgtt---ttccctgctttggtgctcgaaccaatctgg 26851567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 26059262 - 26059224
Alignment:
Q  9 aacttaaactccacatggatccattcatttttcaaaagt 47  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26059262 aacttaaactccacatggatccattcatttttcaaaagt 26059224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 26079232 - 26079194
Alignment:
Q  9 aacttaaactccacatggatccattcatttttcaaaagt 47  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26079232 aacttaaactccacatggatccattcatttttcaaaagt 26079194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 316
Target Start/End: Complemental strand, 26659107 - 26659014
Alignment:
Q  220 ccggaagaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatctgg 316  Q
    ||||||||| || ||||||| ||||||||||||| | |||||||||||||||||||| ||   | |||||| ||  ||||||||| |||||||||||    
T  26659107 ccggaagaagaagaatacaaataatagaagggatctttttacgaaaccagaaagaaactg---tttgtcccctgatttggtgctcgaaccaatctgg 26659014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 316
Target Start/End: Complemental strand, 26765078 - 26764985
Alignment:
Q  220 ccggaagaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatctgg 316  Q
    ||||||||| || ||||||| ||||||||||||| | |||||||||||||||||||| ||   | |||||| ||  ||||||||| |||||||||||    
T  26765078 ccggaagaagaagaatacaaataatagaagggatctttttacgaaaccagaaagaaactg---tttgtcccctgatttggtgctcgaaccaatctgg 26764985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 316
Target Start/End: Original strand, 27662398 - 27662496
Alignment:
Q  218 ttccggaagaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatctgg 316  Q
    |||||||| || || ||||||||| ||||||||||| | |||||  |||||||||||||||| ||| |||||| ||  ||| ||||| |||||||||||    
T  27662398 ttccggaataagaataatacaagttatagaagggatctttttacataaccagaaagaaattgagttgtgtcccctgacttgatgctcgaaccaatctgg 27662496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 25077132 - 25077083
Alignment:
Q  233 aatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgt 282  Q
    ||||||||||||||||||||| | ||| ||||||||||||||||||||||    
T  25077132 aatacaagtaatagaagggatctttttgcgaaaccagaaagaaattgtgt 25077083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 25514202 - 25514162
Alignment:
Q  7 ccaacttaaactccacatggatccattcatttttcaaaagt 47  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  25514202 ccaacttaaactccacatgtatccattcatttttcaaaagt 25514162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 313
Target Start/End: Complemental strand, 25548099 - 25548016
Alignment:
Q  227 aataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatc 313  Q
    ||||||| || || |||||||||||| |||||||  |||||||||||||||||   ||| |||| ||| ||||||||||||||||||    
T  25548099 aataaaagtaaaactaatagaagggagttctttatcaaaccagaaagaaattg---tctctcccctgctttggtgctcaaaccaatc 25548016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 313
Target Start/End: Complemental strand, 25582826 - 25582743
Alignment:
Q  227 aataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatc 313  Q
    ||||||| || || |||||||||||| |||||||  |||||||||||||||||   ||| |||| ||| ||||||||||||||||||    
T  25582826 aataaaagtaaaactaatagaagggagttctttatcaaaccagaaagaaattg---tctctcccctgctttggtgctcaaaccaatc 25582743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 26061690 - 26061634
Alignment:
Q  226 gaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgt 282  Q
    |||||| ||||| ||| ||||||||||||| |||||||||||||||| |||||||||    
T  26061690 gaataataatactagttatagaagggatttatttacgaaaccagaaaaaaattgtgt 26061634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 26081660 - 26081604
Alignment:
Q  226 gaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgt 282  Q
    |||||| ||||| ||| ||||||||||||| |||||||||||||||| |||||||||    
T  26081660 gaataataatactagttatagaagggatttatttacgaaaccagaaaaaaattgtgt 26081604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 313
Target Start/End: Complemental strand, 26059041 - 26058955
Alignment:
Q  224 aagaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatc 313  Q
    |||||||||| || |  |||||||||||| |||||||  |||||||||||||||||||   | |||| ||| ||||||||||||||||||    
T  26059041 aagaataaaagtaaagctaatagaagggagttctttatcaaaccagaaagaaattgtg---tctcccctgctttggtgctcaaaccaatc 26058955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 313
Target Start/End: Complemental strand, 26079011 - 26078925
Alignment:
Q  224 aagaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatc 313  Q
    |||||||||| || |  |||||||||||| |||||||  |||||||||||||||||||   | |||| ||| ||||||||||||||||||    
T  26079011 aagaataaaagtaaagctaatagaagggagttctttatcaaaccagaaagaaattgtg---tctcccctgctttggtgctcaaaccaatc 26078925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 26146335 - 26146296
Alignment:
Q  8 caacttaaactccacatggatccattcatttttcaaaagt 47  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  26146335 caacttaaactccacatggatccattcctttttcaaaagt 26146296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 282
Target Start/End: Complemental strand, 26826990 - 26826951
Alignment:
Q  243 atagaagggatttctttacgaaaccagaaagaaattgtgt 282  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  26826990 atagaagggatttttttacgaaaccagaaagaaattgtgt 26826951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 26887889 - 26887831
Alignment:
Q  255 tctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatctgg 316  Q
    |||||||||||||||||||||| |||||   ||||| ||| |||||||||||||||||||||    
T  26887889 tctttacgaaaccagaaagaaagtgtgt---gtcccctgctttggtgctcaaaccaatctgg 26887831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 25583049 - 25583015
Alignment:
Q  13 taaactccacatggatccattcatttttcaaaagt 47  Q
    |||||||||||||||||||||||||||||||||||    
T  25583049 taaactccacatggatccattcatttttcaaaagt 25583015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 316
Target Start/End: Complemental strand, 28789474 - 28789405
Alignment:
Q  244 tagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatctgg 316  Q
    |||||||||| | |||||||||||||||||||||||||   | |||| ||| ||||||||| |||||||||||    
T  28789474 tagaagggatctttttacgaaaccagaaagaaattgtg---tctcccctgctttggtgctcgaaccaatctgg 28789405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 313
Target Start/End: Complemental strand, 25486492 - 25486406
Alignment:
Q  224 aagaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatc 313  Q
    ||||||||||  | || |||||||||||| |||||||  |||||||||||||||||||     |||| ||| ||||||||||||||||||    
T  25486492 aagaataaaagaaaaactaatagaagggagttctttatcaaaccagaaagaaattgtg---cctcccctgctttggtgctcaaaccaatc 25486406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 25491190 - 25491237
Alignment:
Q  233 aatacaagtaatagaagggatttctttacgaaaccagaaagaaattgt 280  Q
    ||||||| | || |||||||||||||||| ||||||||||||||||||    
T  25491190 aatacaacttattgaagggatttctttacaaaaccagaaagaaattgt 25491237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 313
Target Start/End: Complemental strand, 25513980 - 25513911
Alignment:
Q  241 taatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatc 313  Q
    |||||||||||||||||||| || ||||||||| |||||||     |||| ||| ||||||||||||||||||    
T  25513980 taatagaagggatttctttatgataccagaaagcaattgtg---actcccctgctttggtgctcaaaccaatc 25513911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 282
Target Start/End: Original strand, 27528708 - 27528746
Alignment:
Q  244 tagaagggatttctttacgaaaccagaaagaaattgtgt 282  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  27528708 tagaagggatctttttacgaaaccagaaagaaattgtgt 27528746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 27657786 - 27657828
Alignment:
Q  238 aagtaatagaagggatttctttacgaaaccagaaagaaattgt 280  Q
    |||||| ||||||||| | ||||||||||||||||||||||||    
T  27657786 aagtaacagaagggatctttttacgaaaccagaaagaaattgt 27657828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 316
Target Start/End: Complemental strand, 28795522 - 28795429
Alignment:
Q  220 ccggaagaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatctgg 316  Q
    |||||| || || |||| || ||||||||||||| | ||||| ||||||||| |||||||||   | |||| ||| ||||||||| |||||||||||    
T  28795522 ccggaaaaagaataatagaaataatagaagggatctttttacaaaaccagaaggaaattgtg---tctcccctgctttggtgctcgaaccaatctgg 28795429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 191
Target Start/End: Complemental strand, 31287780 - 31287742
Alignment:
Q  153 tctatctcaatttcatatccattcacaaaataattgact 191  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  31287780 tctatctcaatttcatatccattcacaaaaatattgact 31287742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 26649593 - 26649545
Alignment:
Q  234 atacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgt 282  Q
    ||||| || ||||||||||| | |||||||||||| |||||||||||||    
T  26649593 atacatgttatagaagggatatttttacgaaaccaaaaagaaattgtgt 26649545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 26755561 - 26755513
Alignment:
Q  234 atacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgt 282  Q
    ||||| || ||||||||||| | |||||||||||| |||||||||||||    
T  26755561 atacatgttatagaagggatatttttacgaaaccaaaaagaaattgtgt 26755513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 316
Target Start/End: Complemental strand, 26962220 - 26962137
Alignment:
Q  230 aaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatctgg 316  Q
    ||||||||| || |||| |||||| | ||| ||| |||||||||||| |||||    |||||| | |||||||||||||||||||||    
T  26962220 aaaaatacatgttatagtagggatctttttgcgataccagaaagaaaatgtgtc---tccctttctttggtgctcaaaccaatctgg 26962137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 27682149 - 27682113
Alignment:
Q  154 ctatctcaatttcatatccattcacaaaataattgac 190  Q
    |||||||||||||||||||||||||||||  ||||||    
T  27682149 ctatctcaatttcatatccattcacaaaaacattgac 27682113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 153 - 317
Target Start/End: Original strand, 29270797 - 29270958
Alignment:
Q  153 tctatctcaatttcatatccattcacaaaataattgactccaaag-caatcatccccatcattggcttccggaagaataaaaatacaagtaatagaaggg 251  Q
    ||||||||||||||||||||||||||| || ||||||||||  |  ||| || ||| || |||| |||||||||| ||||||||||||||||||||||||    
T  29270797 tctatctcaatttcatatccattcacacaaaaattgactcctgactcaagca-cccaattattgccttccggaagcataaaaatacaagtaatagaaggg 29270895  T
Q  252 atttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatctggt 317  Q
    ||||||||||||||||||||||||||||||    ||||| ||| |||||| || ||||||||||||    
T  29270896 atttctttacgaaaccagaaagaaattgtg---ggtcccctgctttggtgttcgaaccaatctggt 29270958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29270663 - 29270717
Alignment:
Q  1 aatcatccaacttaaactccacatggatccattcatttttcaaaagttctttctc 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29270663 aatcatccaacttaaactccacatggatccattcatttttcaaaagtcctttctc 29270717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 212 - 317
Target Start/End: Original strand, 265345 - 265447
Alignment:
Q  212 attggcttccggaagaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaa 311  Q
    |||| ||| ||||||||||| |||| |||||| ||||||||| | |||||||||||||||||||||||||||   |||||||| ||||||||||||||||    
T  265345 attgtctttcggaagaataataataaaagtaacagaagggatctttttacgaaaccagaaagaaattgtgtt---tcccttgctttggtgctcaaaccaa 265441  T
Q  312 tctggt 317  Q
    ||||||    
T  265442 tctggt 265447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 265145 - 265212
Alignment:
Q  9 aacttaaactccacatggatccattcatttttcaaaagttctttctccatattatacatgtattgtct 76  Q
    |||||||| |||| ||||||||||||||||||||||||| |||| ||||||||||||  |||||||||    
T  265145 aacttaaattccaaatggatccattcatttttcaaaagtcctttgtccatattatactcgtattgtct 265212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 276
Target Start/End: Original strand, 28124682 - 28124715
Alignment:
Q  243 atagaagggatttctttacgaaaccagaaagaaa 276  Q
    ||||||||||||||||||||||||||||||||||    
T  28124682 atagaagggatttctttacgaaaccagaaagaaa 28124715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 276
Target Start/End: Original strand, 28129713 - 28129746
Alignment:
Q  243 atagaagggatttctttacgaaaccagaaagaaa 276  Q
    ||||||||||||||||||||||||||||||||||    
T  28129713 atagaagggatttctttacgaaaccagaaagaaa 28129746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 316
Target Start/End: Complemental strand, 26139110 - 26139027
Alignment:
Q  230 aaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatctgg 316  Q
    ||||||| || | ||||||||||||| ||||| ||||||||||||||||||   ||| |||  | |||||||||| |||||||||||    
T  26139110 aaaaatagaacttatagaagggatttttttacaaaaccagaaagaaattgt---ctgccccccggattggtgctcgaaccaatctgg 26139027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 265293 - 265330
Alignment:
Q  154 ctatctcaatttcatatccattcacaaaataattgact 191  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  265293 ctatctcaatttcatatccattcacaaaaaaatagact 265330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 26139376 - 26139328
Alignment:
Q  9 aacttaaactccacatggatccattcatttttcaaaagttctttctcca 57  Q
    ||||||| ||| |||||||||||||||||||| |||||| ||| |||||    
T  26139376 aacttaagctctacatggatccattcattttttaaaagtgcttcctcca 26139328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 218 - 317
Target Start/End: Complemental strand, 16419 - 16323
Alignment:
Q  218 ttccggaagaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatctggt 317  Q
    |||||||| |||||  |||||||| |||||||||||||||||||||||||||||||||||||||    ||||| ||| ||||||||||||||||||||||    
T  16419 ttccggaaaaataattatacaagttatagaagggatttctttacgaaaccagaaagaaattgtg---ggtcccctgctttggtgctcaaaccaatctggt 16323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 16613 - 16505
Alignment:
Q  8 caacttaaactccacatggatccattcatttttcaaaagttctttctccatattatacatgtattgtcttttacagtgttcattcaatttcatatcaaac 107  Q
    |||||||||||||||||||||||||||| ||||| ||||| |||| ||||||||||||   |||||||||||||   |||||| ||||||||||| || |    
T  16613 caacttaaactccacatggatccattcacttttc-aaagtcctttgtccatattatactcatattgtcttttacctagttcatacaatttcatatgaatc 16515  T
Q  108 aaagttgtat 117  Q
    ||||||||||    
T  16514 aaagttgtat 16505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 238 - 316
Target Start/End: Original strand, 17990182 - 17990257
Alignment:
Q  238 aagtaatagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatctgg 316  Q
    |||| |||||||||||||||||||||||||||||||||||||||   || ||| ||| |||||||||||||||||||||    
T  17990182 aagttatagaagggatttctttacgaaaccagaaagaaattgtg---tgccccctgctttggtgctcaaaccaatctgg 17990257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 18652546 - 18652606
Alignment:
Q  219 tccggaagaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattg 279  Q
    ||||||||||||| |||| |||| ||||||||||| | |||||| ||||||||||||||||    
T  18652546 tccggaagaataataatagaagttatagaagggatctttttacggaaccagaaagaaattg 18652606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 18676628 - 18676688
Alignment:
Q  219 tccggaagaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattg 279  Q
    ||||||||||||| |||| |||| ||||||||||| | |||||| ||||||||||||||||    
T  18676628 tccggaagaataataatagaagttatagaagggatctttttacggaaccagaaagaaattg 18676688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 18696477 - 18696537
Alignment:
Q  219 tccggaagaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattg 279  Q
    ||||||||||||| |||| || | ||||||||||| | |||||| ||||||||||||||||    
T  18696477 tccggaagaataataataaaatttatagaagggatctttttacggaaccagaaagaaattg 18696537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 18721142 - 18721202
Alignment:
Q  219 tccggaagaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattg 279  Q
    ||||||||||||| |||| |||| ||||||||||| | |||||  ||||||||||||||||    
T  18721142 tccggaagaataataataaaagttatagaagggatctttttacagaaccagaaagaaattg 18721202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 18686451 - 18686498
Alignment:
Q  11 cttaaactccacatggatccattcatttttcaaaagttctttctccat 58  Q
    |||||||||||||| ||||||||||||||| |||||| |||| |||||    
T  18686451 cttaaactccacatagatccattcattttttaaaagtgctttgtccat 18686498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 18696257 - 18696304
Alignment:
Q  11 cttaaactccacatggatccattcatttttcaaaagttctttctccat 58  Q
    |||||||||||||| ||||||||||||||| |||||| |||| |||||    
T  18696257 cttaaactccacattgatccattcattttttaaaagtgctttgtccat 18696304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 18728569 - 18728627
Alignment:
Q  221 cggaagaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattg 279  Q
    ||||||||||| |||| |||| ||||||||||| | |||||  ||||||||||||||||    
T  18728569 cggaagaataataataaaagttatagaagggatctttttacagaaccagaaagaaattg 18728627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 18676409 - 18676458
Alignment:
Q  9 aacttaaactccacatggatccattcatttttcaaaagttctttctccat 58  Q
    ||||| |||||||||| ||||||||||||||| |||||| |||| |||||    
T  18676409 aacttcaactccacatagatccattcattttttaaaagtgctttgtccat 18676458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 18652350 - 18652386
Alignment:
Q  11 cttaaactccacatggatccattcatttttcaaaagt 47  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  18652350 cttaaactccacatagatccattcattttttaaaagt 18652386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 18686671 - 18686731
Alignment:
Q  219 tccggaagaataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattg 279  Q
    |||||||||||||  ||| |||| ||||||||||| | |||||  ||||||||||||||||    
T  18686671 tccggaagaataattatagaagttatagaagggatctttttacagaaccagaaagaaattg 18686731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 316
Target Start/End: Complemental strand, 10624 - 10555
Alignment:
Q  244 tagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatctgg 316  Q
    |||||||||| | |||||||||||||||||||||||||   | |||| ||| ||||||||| |||||||||||    
T  10624 tagaagggatctttttacgaaaccagaaagaaattgtg---tctcccctgctttggtgctcgaaccaatctgg 10555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 316
Target Start/End: Original strand, 1759 - 1828
Alignment:
Q  244 tagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatctgg 316  Q
    |||||||||| | |||||||||||||||||||||||||   | |||| ||| ||||||||| |||||||||||    
T  1759 tagaagggatctttttacgaaaccagaaagaaattgtg---tctcccctgctttggtgctcgaaccaatctgg 1828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 316
Target Start/End: Original strand, 10725 - 10794
Alignment:
Q  244 tagaagggatttctttacgaaaccagaaagaaattgtgttctgtcccttgcattggtgctcaaaccaatctgg 316  Q
    |||||||||| | |||||||||||||||||||||||||   | |||| ||| ||||||||| |||||||||||    
T  10725 tagaagggatctttttacgaaaccagaaagaaattgtg---tctcccctgctttggtgctcgaaccaatctgg 10794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 1524 - 1564
Alignment:
Q  18 tccacatggatccattcatttttcaaaagttctttctccat 58  Q
    ||||||||||||||||||||||| |||||| |||| |||||    
T  1524 tccacatggatccattcattttttaaaagtgctttttccat 1564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University