View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8248_high_5 (Length: 380)
Name: NF8248_high_5
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8248_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 22 - 372
Target Start/End: Complemental strand, 30593550 - 30593201
Alignment:
| Q |
22 |
aaccgtctatttaaattggactaaaactaaaaaattgcaaatacgcagcactaacgtgaaaatgactccactaaactaactaccacatccgtaaccacgt |
121 |
Q |
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| T |
30593550 |
aaccgtctatttaaattggaataaaactaaaatattgcaaatacgccgcactaaggtggaaatgactccactaaactaacaaccacacctgtaaccgcat |
30593451 |
T |
|
| Q |
122 |
caataagtaaaatctctaaattactagagaaatttcttattcaattcattactttttggacttgtggacaaacagagaaagggaaattgaaatgtatgta |
221 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30593450 |
caataagtaaaatctctaa-ttactagagaaatttcatattcaattcattacttttcgaacttgtggacaaagagagaaagggaaattgaaatgtatgta |
30593352 |
T |
|
| Q |
222 |
tagacgagggttcattgcattaaggaaaagagcccctacactccacacagaaactgagagacataaggcacgtactacgtacagttagtgcctaactcac |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30593351 |
tagacgagggttcattgcattaaggaaaagagcccctacactccacacagaaactgagagacataaggcacgtactacgtacagttagtgcctaactcac |
30593252 |
T |
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| Q |
322 |
tagtagtagcagtaccacacactacccatattccaagctttcatctcactc |
372 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30593251 |
tagtagtagcagtaccacacactacccatattccaagctttcatttcactc |
30593201 |
T |
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