View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8248_high_7 (Length: 346)
Name: NF8248_high_7
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8248_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 335
Target Start/End: Original strand, 48878198 - 48878513
Alignment:
| Q |
17 |
gaaatgcacttagacatgatacagtttaagatataccttccaatttcatagtctttaatatgtataagtgcatttccatctttccctgttcaacctattt |
116 |
Q |
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| T |
48878198 |
gaaatgcacttagacatgataaagtttaagatataccttccaatttcatagtctttaatatgtataagtgcatttccat-tttccctgttcaacctattt |
48878296 |
T |
|
| Q |
117 |
taccatctaatacaaatgaagagtatattgacatgtaggcctttagggtcaatagggtgttgtaacatgtgacatatatacatacaaatgaagagtatat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
48878297 |
taccatctaatacaaatgaagagtatattgacatgtaggcctttagggtcattagggtgttgtaacatgtgacatat--acatacaaatgaagagtatat |
48878394 |
T |
|
| Q |
217 |
gtcacctaagtacaaccctttttattaaatagttttaaggattaaactttgggaccttcatttcatctgattttgtaaatctactcgagtggtacaatca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48878395 |
gtcacctaagtacaaccctttttattaaatagttttaaggattaaacttttggaccttcatttcatctgattttgtaaatctactcgagtggtacactca |
48878494 |
T |
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| Q |
317 |
attggcttttttatttctt |
335 |
Q |
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||||||||||||||||||| |
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| T |
48878495 |
attggcttttttatttctt |
48878513 |
T |
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