View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8248_low_11 (Length: 345)
Name: NF8248_low_11
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8248_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 47680930 - 47680604
Alignment:
| Q |
18 |
aatatgtatcattaattccaaatataaatgcaataccatatactaccaaatatacatggatgtacaaagtaatagctacattatacactatcgccaaaaa |
117 |
Q |
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| T |
47680930 |
aatatgtatcattaattccaaatataaatgcaataccatatactaccaattatacatggatgtacaaagtaatagctacattatacactatcgccaaaaa |
47680831 |
T |
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| Q |
118 |
atccattattgttgtatagtattgatgatcatcaatgaattgagtcaaaccctaataaacgcaattggtttgtgtctcggtttttcaaacatgatgggtg |
217 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47680830 |
atccattattgttgta--gtattgatgatcatcaatgaattgagtcaaaccctaataaacgcaattggtttgtgtctcggtttttcaaacatgatgggtg |
47680733 |
T |
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| Q |
218 |
gttagggtgtcacaacacaattggtttctgtgtttaaaaattcgaatcctgtcttttccatc---------ctttagggtagccccccatgccttgctgt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47680732 |
gttagggtgtcacaacacaattggtttctgtgtttaaaaattcgaatcctgtcttttccatccttgcttttctttagggtagccccccatgccttgctgt |
47680633 |
T |
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| Q |
309 |
cactgcatgtaggtccttcattctctgct |
337 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
47680632 |
cactgcatgtaggtccttcattctctgct |
47680604 |
T |
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