View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8248_low_12 (Length: 342)
Name: NF8248_low_12
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8248_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 323
Target Start/End: Original strand, 23111712 - 23112029
Alignment:
| Q |
14 |
agacactatctatttgttccatggaaattctttttgggcaatagatgcacaaattcaaaatggtgcaagtgcaacagcagacacatggtcatccacagat |
113 |
Q |
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| T |
23111712 |
agacactatctatttgttccatggaaattctttttgggcaatagatgcacaaattcaaaatggtgc------aacagcagacacatggtcatccacagat |
23111805 |
T |
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| Q |
114 |
atagtagctctctatttgttcaccccaacattttttatacacataaacgagataaaatgtattgcatgagaaggcatggctaggagggtacgagaaatta |
213 |
Q |
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| T |
23111806 |
atagttgctctctatttgttcaccccaacattttttatacacataaacgagataaaatgtattgcatgagaaggcatggctaggagggtacgagaaatta |
23111905 |
T |
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| Q |
214 |
agtgacatgaatacgaaagagcatacctttagagccataagt--------------atggagtgttcgcctatcatctcacaatgctaagtacctacagc |
299 |
Q |
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| T |
23111906 |
agtgacatgaatacgtaagagcatacctttagagccataagtatggactttcttacatggagtgttcgcctatcatctcacaaggctaagtacctacagc |
23112005 |
T |
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| Q |
300 |
aagccgaagaacatataaccaatg |
323 |
Q |
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| T |
23112006 |
aagccgaagaacatataaccaatg |
23112029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 41936606 - 41936501
Alignment:
| Q |
145 |
tttttatacacataaacgagataaaatgtattgcatgagaaggcatggctaggagggtacgagaaattaagtgacatgaatacgaaagagcataccttta |
244 |
Q |
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| T |
41936606 |
tttttatacatataaa-gagataaaatgtacagcatgagaaagcattgttaggagggtacgagacattaagggacagaaagacataagagcatacctcta |
41936508 |
T |
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| Q |
245 |
gagccat |
251 |
Q |
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| T |
41936507 |
gagccat |
41936501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 4304051 - 4304108
Alignment:
| Q |
15 |
gacactatctatttgttccatggaaattctttttgggcaatagatgcacaaattcaaa |
72 |
Q |
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| T |
4304051 |
gacactctctatttgttcaatggaaattatttttgggcaatggatcaacaaattcaaa |
4304108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 4304235 - 4304288
Alignment:
| Q |
198 |
agggtacgagaaattaagtgacatgaatacgaaagagcatacctttagagccat |
251 |
Q |
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| T |
4304235 |
agggtacgagacattcagtgacatgaagacgtaagagcatacctctagagccat |
4304288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 175
Target Start/End: Original strand, 4304161 - 4304213
Alignment:
| Q |
121 |
ctctctatttgttcaccccaacattttttatacacataaacgagataaaatgtat |
175 |
Q |
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| T |
4304161 |
ctctctattcgttcaccccaaca-tttttatacacataaa-gagataaattgtat |
4304213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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