View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8248_low_14 (Length: 335)
Name: NF8248_low_14
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8248_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 3154023 - 3154328
Alignment:
| Q |
1 |
gatgcatgctaatgttctccaccaccatcttggttttctggtcatcggaggaaacttaaagccagcagatgagccttccttcattgctcgaggggcccta |
100 |
Q |
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| T |
3154023 |
gatgcatgctaatgttctccaccaccatcttggttttctggtcatcggaggaaacttaaagccagcagatgagccttccttcattgctcgaggggcccta |
3154122 |
T |
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| Q |
101 |
caagacttgcgcagcgaaggtaacacagggatagtacaagatagaagattttgacccccacttaaaagtaggcttgatgcagaagacatgtctgtgtatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3154123 |
caagacttgcgcagcgaaggtaacacagggatagtacgagatagaagattttgacccccacttaaaagtaggcttgatgcagaagacatgtctgtgtaag |
3154222 |
T |
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| Q |
201 |
ccattcctatcacagaaagattgttataaattaagaagccgaaacaaatttttcaaggatggttattgccaaatataagcaccgcagtcaacaattccta |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3154223 |
ccattcctatcacagaaagattgatataaattaagaagccgaaacaaatttttcaaggatggttattgccaaatataagcaccgcagtcaacaattccta |
3154322 |
T |
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| Q |
301 |
cagtca |
306 |
Q |
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|||||| |
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| T |
3154323 |
cagtca |
3154328 |
T |
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