View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8248_low_19 (Length: 314)
Name: NF8248_low_19
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8248_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 11 - 296
Target Start/End: Complemental strand, 35939601 - 35939316
Alignment:
| Q |
11 |
ataatactattgtggtgatgattaacgatgcaggtgacaaatactgcaactggagctcaggtaacagtgagaatagtggaccaatgctctaatggtggac |
110 |
Q |
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| T |
35939601 |
ataataatattgtggtgatgactaatgatgcaggtgacaaatactgcaactggagctcaggtaacagtgagaatagtggaccaatgctccaacggtggac |
35939502 |
T |
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| Q |
111 |
ttgacttagatgtgaatgtcttcaatcaaattgataccaatggtcagggcgttcagaatggtcaccttacagttaactatagctttgttaattgcggtga |
210 |
Q |
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| T |
35939501 |
ttgacttagatgtgaatgtcttcaatcaaattgataccaatggacagggcgttcagaatggtcaccttacagttaactatagctttgttaattgcggtga |
35939402 |
T |
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| Q |
211 |
ttaattgattcattcagcagtgtgaatgaatcactctttgtaataaaaattatataagtagtactgctactttcttataacaccat |
296 |
Q |
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| T |
35939401 |
ttaattgattcattcagcagtgtgaatgaatcactctttgtaataaaaattatataagtagtactgctgctttcttataacaccat |
35939316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 37 - 204
Target Start/End: Complemental strand, 35946570 - 35946403
Alignment:
| Q |
37 |
gatgcaggtgacaaatactgcaactggagctcaggtaacagtgagaatagtggaccaatgctctaatggtggacttgacttagatgtgaatgtcttcaat |
136 |
Q |
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| T |
35946570 |
gatgcaggtgaaaaatactgcaactggagctcaggaaacagtgagaatagtggatcagtgcgccaatggtggacttgacttagatgtgaatgtcttcaaa |
35946471 |
T |
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| Q |
137 |
caaattgataccaatggtcagggcgttcagaatggtcaccttacagttaactatagctttgttaattg |
204 |
Q |
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| T |
35946470 |
cgaattgataccaatggacagggttaccagaagggtcaccttatagttgattatgtctttgttaattg |
35946403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 35952730 - 35952551
Alignment:
| Q |
22 |
gtggtgatgattaacgatgcaggtgacaaatactgcaactggagctcaggtaacagtgagaatagtggaccaatgctctaatggtggacttgacttagat |
121 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | |||||||| | ||||| ||| |
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| T |
35952730 |
gtggtgatgactaatgatgcaggtgacaaatactgcaactggagctcaggcaacagtaagaatagtggaccaatgtgccaatggtgggttagacttggat |
35952631 |
T |
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| Q |
122 |
gtgaatgtcttcaatcaaattgataccaatggtcagggcgttcagaatggtcaccttacagttaactatagctttgttaa |
201 |
Q |
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| T |
35952630 |
gtgaatgtcttcaatcaaattgataccaatggacaaggttaccagcagggtcaccttacggttaactatgtctttgttaa |
35952551 |
T |
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