View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8248_low_2 (Length: 565)

Name: NF8248_low_2
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8248_low_2
NF8248_low_2
[»] chr1 (19 HSPs)
chr1 (272-413)||(32129605-32129746)
chr1 (272-352)||(8066661-8066741)
chr1 (275-352)||(51235141-51235218)
chr1 (272-352)||(32715413-32715493)
chr1 (272-352)||(34394685-34394765)
chr1 (272-352)||(22872734-22872814)
chr1 (272-352)||(27841530-27841610)
chr1 (272-352)||(24187749-24187829)
chr1 (273-353)||(34386553-34386632)
chr1 (285-353)||(15647919-15647987)
chr1 (273-323)||(16292553-16292603)
chr1 (272-333)||(791497-791558)
chr1 (379-413)||(791435-791469)
chr1 (379-413)||(15648012-15648046)
chr1 (379-413)||(22872657-22872691)
chr1 (379-413)||(24187667-24187701)
chr1 (379-413)||(27841657-27841691)
chr1 (379-413)||(34386659-34386693)
chr1 (379-413)||(34394604-34394638)
[»] chr2 (9 HSPs)
chr2 (272-364)||(41193387-41193479)
chr2 (18-187)||(21746661-21746821)
chr2 (272-358)||(2152978-2153064)
chr2 (272-348)||(31366553-31366629)
chr2 (494-555)||(21746543-21746603)
chr2 (272-352)||(12840744-12840824)
chr2 (379-413)||(2153089-2153123)
chr2 (379-413)||(31366472-31366506)
chr2 (379-413)||(41193502-41193536)
[»] chr8 (10 HSPs)
chr8 (272-367)||(10904393-10904488)
chr8 (272-413)||(34361680-34361820)
chr8 (272-351)||(14338334-14338413)
chr8 (272-352)||(33690414-33690494)
chr8 (272-366)||(36369790-36369884)
chr8 (379-413)||(10904340-10904374)
chr8 (379-413)||(17033052-17033086)
chr8 (379-413)||(17563488-17563522)
chr8 (379-413)||(33690545-33690579)
chr8 (379-413)||(36369740-36369774)
[»] chr5 (13 HSPs)
chr5 (272-352)||(26817185-26817265)
chr5 (272-358)||(28749035-28749121)
chr5 (272-352)||(42908408-42908488)
chr5 (272-353)||(3524197-3524278)
chr5 (272-352)||(32957059-32957139)
chr5 (272-332)||(31070463-31070523)
chr5 (379-413)||(3524136-3524170)
chr5 (379-413)||(26817305-26817339)
chr5 (379-413)||(31070378-31070412)
chr5 (379-413)||(32956985-32957019)
chr5 (379-413)||(42906362-42906396)
chr5 (379-413)||(42908336-42908370)
chr5 (379-412)||(28748969-28749002)
[»] chr3 (7 HSPs)
chr3 (272-352)||(10221827-10221907)
chr3 (272-413)||(50310439-50310581)
chr3 (272-348)||(25614351-25614427)
chr3 (272-353)||(44772790-44772871)
chr3 (379-413)||(10221947-10221981)
chr3 (379-413)||(25614471-25614505)
chr3 (379-413)||(44772896-44772930)
[»] chr7 (13 HSPs)
chr7 (274-353)||(10165328-10165407)
chr7 (285-367)||(32746986-32747068)
chr7 (272-367)||(33380945-33381044)
chr7 (287-367)||(40475607-40475687)
chr7 (272-352)||(38888301-38888381)
chr7 (286-364)||(45918766-45918844)
chr7 (290-353)||(43986776-43986839)
chr7 (275-323)||(28683103-28683151)
chr7 (285-345)||(39916125-39916185)
chr7 (379-413)||(28683008-28683042)
chr7 (379-413)||(32746936-32746970)
chr7 (379-413)||(33381070-33381104)
chr7 (379-411)||(35087360-35087392)
[»] chr4 (10 HSPs)
chr4 (272-351)||(23517924-23518003)
chr4 (272-352)||(6583883-6583963)
chr4 (272-352)||(35652001-35652081)
chr4 (272-352)||(31878156-31878236)
chr4 (272-348)||(46173156-46173231)
chr4 (287-352)||(26466383-26466448)
chr4 (272-320)||(38937055-38937103)
chr4 (379-413)||(6583806-6583840)
chr4 (379-413)||(38936970-38937004)
chr4 (381-413)||(46173070-46173102)
[»] scaffold0488 (2 HSPs)
scaffold0488 (272-352)||(6118-6198)
scaffold0488 (379-413)||(6241-6275)
[»] chr6 (6 HSPs)
chr6 (272-352)||(14659708-14659788)
chr6 (272-352)||(17153071-17153151)
chr6 (272-352)||(33703773-33703853)
chr6 (272-323)||(27597361-27597412)
chr6 (272-321)||(12896578-12896627)
chr6 (379-413)||(17153198-17153232)


Alignment Details
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 272 - 413
Target Start/End: Original strand, 32129605 - 32129746
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaaccaaaccacttgaactggnnn 371  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||        
T  32129605 ttataatggtttacgaaccgtaccgttaatttattaacagttcttgaaccataaccgaaccatcttgaaccgaaccgaaccaaaccacttgaactgattt 32129704  T
Q  372 nnnnnnnaaggaaaccacttaaactctttgttggatctttcc 413  Q
           ||||||||||||| |||||||||||||||||||||    
T  32129705 tttttttaaggaaaccacttgaactctttgttggatctttcc 32129746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 8066741 - 8066661
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacc 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8066741 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataaccgaaccatcttgaaccgaaccgaacc 8066661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 51235141 - 51235218
Alignment:
Q  275 taatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacc 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  51235141 taatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataaccgaaccatcttgaaccgaaccgaacc 51235218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 32715493 - 32715413
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacc 352  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32715493 ttataatggttcacaaaccgaaccgttaatttattaacagttcttgaaccataaccgaaccatcttgaaccgaaccgaacc 32715413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 34394765 - 34394685
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacc 352  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34394765 ttataatggttcatgaaccgaaccgttaatttattaacagttcttgaaccataaccgaaccatcttgaaccgaaccgaacc 34394685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 22872814 - 22872734
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacc 352  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  22872814 ttataatggttcaagaaccgaaccgttaatttattaacagttcttgaaccataaccgaaccatcttgaaccgaaccaaacc 22872734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 272 - 352
Target Start/End: Original strand, 27841530 - 27841610
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacc 352  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27841530 ttataatggttcatgaaccaaaccgttaatttattaacagttcttgaaccataaccgaaccatcttgaaccgaaccgaacc 27841610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 24187829 - 24187749
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacc 352  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  24187829 ttataatggttcatgaactgaaccgttaatttattaacagttcttgaaccataaccgaaccattttgaaccgaaccgaacc 24187749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 273 - 353
Target Start/End: Original strand, 34386553 - 34386632
Alignment:
Q  273 tataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacca 353  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||    
T  34386553 tataatggttcatgaaccgaaccgttaatttattaacagttcttgaaccataaccgaaccgt-ttgaaccgaaccgaacca 34386632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 285 - 353
Target Start/End: Original strand, 15647919 - 15647987
Alignment:
Q  285 cgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacca 353  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||    
T  15647919 cgaaccgaaccgttaatttattaacagtttttgaaccataaccgaaccatcttgaaccgaaccaaacca 15647987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 273 - 323
Target Start/End: Complemental strand, 16292603 - 16292553
Alignment:
Q  273 tataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccat 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16292603 tataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccat 16292553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 272 - 333
Target Start/End: Complemental strand, 791558 - 791497
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaacca 333  Q
    |||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||    
T  791558 ttataaaggttcacgaaccgaaccgtaaatttattaaccgttcttgaaccataaccgaacca 791497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Complemental strand, 791469 - 791435
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  791469 aaggaaaccacttgaactctttgttggatctttcc 791435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 15648012 - 15648046
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  15648012 aaggaaaccacttgaactctttgttggatctttcc 15648046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Complemental strand, 22872691 - 22872657
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  22872691 aaggaaaccacttgaactctttgttggatctttcc 22872657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Complemental strand, 24187701 - 24187667
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  24187701 aaggaaaccacttgaactctttgttggatctttcc 24187667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 27841657 - 27841691
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  27841657 aaggaaaccacttgaactctttgttggatctttcc 27841691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 34386659 - 34386693
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  34386659 aaggaaaccacttgaactctttgttggatctttcc 34386693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Complemental strand, 34394638 - 34394604
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  34394638 aaggaaaccacttgaactctttgttggatctttcc 34394604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 272 - 364
Target Start/End: Original strand, 41193387 - 41193479
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaaccaaaccacttgaa 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41193387 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataaccgaaccatcttgaaccgaaccgaaccaaaccacttgaa 41193479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 21746821 - 21746661
Alignment:
Q  18 aaagactcacatacacatgcagacatcgaatattgttggtccaaacatg----catatgaagccagaacaacatgtcgtttcagcacatgttttgtaaaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    |||||| |||||||||||||||||||||||||||||||||||         
T  21746821 aaagactcacatacacatgcagacatcgaatattgttggtccaaacatgcattcatatgcagccagaacaacatgtcgtttcagcacatgttttg----- 21746727  T
Q  114 gcttaatcttttaagaatgggtactcc---taaattcaagtcataccccgtaccggcatcccatacttatttgttga 187  Q
               ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||| ||||    
T  21746726 -----------taagaatgggtactcctaataaattcaagtcataccccgtaccggcatcccatacttatttattga 21746661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 272 - 358
Target Start/End: Original strand, 2152978 - 2153064
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaaccaaacca 358  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||    
T  2152978 ttataatggttcacgaaccgaaccgttaatttattaaccgttcttgaaccataatcgaaccatcttgaaccgaaccgaaccaaacca 2153064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 272 - 348
Target Start/End: Complemental strand, 31366629 - 31366553
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccg 348  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  31366629 ttataatggttcatgaaccgaaccgttaatttattaacagttcttgaaccataaccaaaccatcttgaaccgaaccg 31366553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 494 - 555
Target Start/End: Complemental strand, 21746603 - 21746543
Alignment:
Q  494 ttgggttctccattttagtaaacgaggttacatttttaaaagaataaattatatatgaacac 555  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21746603 ttgggttctccattttagtaaacgaggttacatttttaaaa-aataaattatatatgaacac 21746543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 12840824 - 12840744
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacc 352  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||   ||||||||| ||||||| ||||||    
T  12840824 ttataatggttcacgaaccgaaccgttaatttattaacagctcttgaactataatcaaaccatcttaaaccgaaacgaacc 12840744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 2153089 - 2153123
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  2153089 aaggaaaccacttgaactctttgttggatctttcc 2153123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Complemental strand, 31366506 - 31366472
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  31366506 aaggaaaccacttgaactctttgttggatctttcc 31366472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 41193502 - 41193536
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  41193502 aaggaaaccacttgaactctttgttggatctttcc 41193536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 272 - 367
Target Start/End: Complemental strand, 10904488 - 10904393
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaaccaaaccacttgaactg 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  10904488 ttataatggttcacgaaccgaaccgttaatttattaacagttcttaaaccataaccgaaccattttgaaccgaaccgaaccaaaccacttgaactg 10904393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 272 - 413
Target Start/End: Complemental strand, 34361820 - 34361680
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaaccaaaccacttgaactggnnn 371  Q
    |||||||||||||||||| |||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||| |       
T  34361820 ttataatggttcacgaactgaaccgttaatttattaacagttcttaaatcataaccgaaccatcttgaaccgaaccgaaccaaaccacttgaact-gttt 34361722  T
Q  372 nnnnnnnaaggaaaccacttaaactctttgttggatctttcc 413  Q
           ||||||||||||| |||||||||||||||||||||    
T  34361721 tttttttaaggaaaccacttgaactctttgttggatctttcc 34361680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 272 - 351
Target Start/End: Complemental strand, 14338413 - 14338334
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaac 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14338413 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaac 14338334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 272 - 352
Target Start/End: Original strand, 33690414 - 33690494
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacc 352  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||| |||||||||||||||||    
T  33690414 ttataatggttcacgaaccgaaccgtcaatttattaacagttcttgaaccataaccaaaccattttgaaccgaaccgaacc 33690494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 272 - 366
Target Start/End: Complemental strand, 36369884 - 36369790
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaaccaaaccacttgaact 366  Q
    ||||||| | ||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||  |||| |||||| |||||||||||||    
T  36369884 ttataatagatcacgaatcgagccgttaatttattaacagttcttgaaccataaccgaaccatcttgactcgaatcgaaccgaaccacttgaact 36369790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Complemental strand, 10904374 - 10904340
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  10904374 aaggaaaccacttgaactctttgttggatctttcc 10904340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 17033052 - 17033086
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  17033052 aaggaaaccacttgaactctttgttggatctttcc 17033086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 17563488 - 17563522
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  17563488 aaggaaaccacttgaactctttgttggatctttcc 17563522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 33690545 - 33690579
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  33690545 aaggaaaccacttgaactctttgttggatctttcc 33690579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Complemental strand, 36369774 - 36369740
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  36369774 aaggaaaccacttgaactctttgttggatctttcc 36369740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 272 - 352
Target Start/End: Original strand, 26817185 - 26817265
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacc 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  26817185 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataatcgaaccatcttgaaccgaaccgaacc 26817265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 272 - 358
Target Start/End: Complemental strand, 28749121 - 28749035
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaaccaaacca 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| |||||||||||    
T  28749121 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataaccgaactattttgaaccgaactgaaccaaacca 28749035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 42908488 - 42908408
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacc 352  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||    
T  42908488 ttataatggttcacgaaccgaaccgttaatttattaacagtttttgaaccataaccgaaccatcttgaaacgaaccgaacc 42908408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 272 - 353
Target Start/End: Complemental strand, 3524278 - 3524197
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacca 353  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||    
T  3524278 ttataatggttcatgaaccgaaccgttaatttattaacagttcttgaactataaccgaaccatcttgaatcgaaccgaacca 3524197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 32957139 - 32957059
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacc 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| |||||||    
T  32957139 ttataatggttcacgaaccgaaccgttaatttattaacagttcttaaatcataaccgaaccatcttgaaccgatccgaacc 32957059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 31070523 - 31070463
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaacc 332  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  31070523 ttataatggttcacgaaccgaatcgttaatttattaacagttcttgaaccataaccgaacc 31070463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Complemental strand, 3524170 - 3524136
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  3524170 aaggaaaccacttgaactctttgttggatctttcc 3524136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 26817305 - 26817339
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  26817305 aaggaaaccacttgaactctttgttggatctttcc 26817339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Complemental strand, 31070412 - 31070378
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  31070412 aaggaaaccacttcaactctttgttggatctttcc 31070378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Complemental strand, 32957019 - 32956985
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  32957019 aaggaaaccacttgaactctttgttggatctttcc 32956985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Complemental strand, 42906396 - 42906362
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  42906396 aaggaaaccacttgaactctttgttggatctttcc 42906362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Complemental strand, 42908370 - 42908336
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  42908370 aaggaaaccacttgaactctttgttggatctttcc 42908336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 412
Target Start/End: Complemental strand, 28749002 - 28748969
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttc 412  Q
    ||||||||||||| ||||||||||||||||||||    
T  28749002 aaggaaaccacttgaactctttgttggatctttc 28748969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 272 - 352
Target Start/End: Original strand, 10221827 - 10221907
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacc 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  10221827 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataatcgaaccatcttgaaccgaaccgaacc 10221907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 272 - 413
Target Start/End: Complemental strand, 50310581 - 50310439
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaaccaaaccacttgaactg-gnn 370  Q
    ||||||||||| |||||||||||| |||||||||||| ||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||        
T  50310581 ttataatggtttacgaaccgaaccattaatttattaatagttcttgaaccataatcgaaccatcttgaaccgaaccaaaccaaaccacttgaactgtttt 50310482  T
Q  371 nnnnnnnnaaggaaaccacttaaactctttgttggatctttcc 413  Q
            ||||||||||||| |||||||||||||||||||||    
T  50310481 ttttttttaaggaaaccacttgaactctttgttggatctttcc 50310439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 272 - 348
Target Start/End: Original strand, 25614351 - 25614427
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccg 348  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  25614351 ttataatggttcacgaaccgaaccgttaatttattagcagttcttgaaccataaccgaaccatcttgaaccgaaccg 25614427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 272 - 353
Target Start/End: Original strand, 44772790 - 44772871
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacca 353  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||| |||||    
T  44772790 ttataatagttcacgaaccgaaccgttaatttattgacagttcttgaaccataaccgaaccatctttaaccgaaccaaacca 44772871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 10221947 - 10221981
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  10221947 aaggaaaccacttgaactctttgttggatctttcc 10221981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 25614471 - 25614505
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  25614471 aaggaaaccacttgaactctttgttggatctttcc 25614505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 44772896 - 44772930
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  44772896 aaggaaaccacttgaactctttgttggatctttcc 44772930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 274 - 353
Target Start/End: Original strand, 10165328 - 10165407
Alignment:
Q  274 ataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacca 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  10165328 ataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataaccgaaccatcttaaaccgaaccgaacca 10165407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 285 - 367
Target Start/End: Complemental strand, 32747068 - 32746986
Alignment:
Q  285 cgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaaccaaaccacttgaactg 367  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||    
T  32747068 cgaaccgaaccgttaatttattaacagttcttgaaccataaccgaaccatcttgaaccgaaccaaaccaaaccacctgaactg 32746986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 272 - 367
Target Start/End: Original strand, 33380945 - 33381044
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaacc----gaaccgaaccaaaccacttgaactg 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    |||||||||||||||||| ||||||    
T  33380945 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataaccaaaccatcttgaaccgtttgaaccgaaccaaaccactagaactg 33381044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 287 - 367
Target Start/End: Complemental strand, 40475687 - 40475607
Alignment:
Q  287 aaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaaccaaaccacttgaactg 367  Q
    |||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  40475687 aaccgaaccgttaatttattaatagtttttgaaccataaccgaaccatcttgaaccgaaccgaaccaaaccacttaaactg 40475607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 272 - 352
Target Start/End: Original strand, 38888301 - 38888381
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacc 352  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||    
T  38888301 ttataatggtttacgaaccgaactgttaatttattaatagttcttgaaccataatcgaaccatcttgaaccgaaccgaacc 38888381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 286 - 364
Target Start/End: Original strand, 45918766 - 45918844
Alignment:
Q  286 gaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaaccaaaccacttgaa 364  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||  ||||||||||||||||    
T  45918766 gaaccaaaccgttaatttattaacagttcttgaaccataaccgaaccatcttgaatcgaacataaccaaaccacttgaa 45918844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 353
Target Start/End: Complemental strand, 43986839 - 43986776
Alignment:
Q  290 cgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacca 353  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  43986839 cgaagcgttaatttattaacagttcttgaaccataaccgaaccatcttgaaccgaaccaaacca 43986776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 28683151 - 28683103
Alignment:
Q  275 taatggttcacgaaccgaaccgttaatttattaacagttcttgaaccat 323  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28683151 taatggttcacaaaccgaaccgttaatttattaacagttcttgaaccat 28683103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 39916185 - 39916125
Alignment:
Q  285 cgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaa 345  Q
    |||||||||||  ||||||| |||  ||| |||||||||||||||||||| ||||||||||    
T  39916185 cgaaccgaaccagtaatttaataatggttattgaaccataactgaaccattttgaaccgaa 39916125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Complemental strand, 28683042 - 28683008
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  28683042 aaggaaaccacttgaactctttgttggatctttcc 28683008  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Complemental strand, 32746970 - 32746936
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  32746970 aaggaaaccacttgaactctttgttggatctttcc 32746936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 33381070 - 33381104
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  33381070 aaggaaaccacttgaactctttgttggatctttcc 33381104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 411
Target Start/End: Complemental strand, 35087392 - 35087360
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatcttt 411  Q
    ||||||||||||| |||||||||||||||||||    
T  35087392 aaggaaaccacttgaactctttgttggatcttt 35087360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 272 - 351
Target Start/End: Complemental strand, 23518003 - 23517924
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaac 351  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23518003 ttataatggttcacgaaccgaaccattaatttattaacagttcttgaaccataaccgaaccatcttgaaccgaaccgaac 23517924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 6583963 - 6583883
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacc 352  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  6583963 ttataatggttcacgaaccgaacctttaatttattaacagttcttgaaccataaccgaaccatcttaaaccgaaccgaacc 6583883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 272 - 352
Target Start/End: Original strand, 35652001 - 35652081
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacc 352  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  35652001 ttataatggttcatgaaccgaaccgttaatttattaacagtttttgaaccataaccgaaccatcttgaaccgaaccgaacc 35652081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 272 - 352
Target Start/End: Original strand, 31878156 - 31878236
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacc 352  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  31878156 ttatagtggttcacgaaccaaaccgttaatttattaacagttcttgaaccataaccgaaccatcttgaatcgaaccgaacc 31878236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 272 - 348
Target Start/End: Complemental strand, 46173231 - 46173156
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccg 348  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  46173231 ttataatggttcacgaaccga-ccgttaatttattaacagttcttgaaccataaccgaaccatcttgaaccgaaccg 46173156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 287 - 352
Target Start/End: Complemental strand, 26466448 - 26466383
Alignment:
Q  287 aaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacc 352  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26466448 aaccgaaccgttaatttattaacagttcttgaaccataaccgaaccatcttgaaccgaaccgaacc 26466383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 38937103 - 38937055
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaac 320  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||    
T  38937103 ttataatggttcctgaaccgaaccgttaatttattaacagttcttgaac 38937055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Complemental strand, 6583840 - 6583806
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  6583840 aaggaaaccacttgaactctttgttggatctttcc 6583806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Complemental strand, 38937004 - 38936970
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  38937004 aaggaaaccacttgaactctttgttggatctttcc 38936970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 413
Target Start/End: Complemental strand, 46173102 - 46173070
Alignment:
Q  381 ggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||| |||||||||||||||||||||    
T  46173102 ggaaaccacttgaactctttgttggatctttcc 46173070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 272 - 352
Target Start/End: Original strand, 6118 - 6198
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacc 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||    
T  6118 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataaccgaaccatcgtaaaccgaaccgaacc 6198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 6241 - 6275
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    |||||||||||||||||||||||||||||||||||    
T  6241 aaggaaaccacttaaactctttgttggatctttcc 6275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 272 - 352
Target Start/End: Original strand, 14659708 - 14659788
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacc 352  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  14659708 ttataatggttcacgaactgaaccgttaatttattaacagttcttcaaccataaccgaaccatcttgaaccgaaccgaacc 14659788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 272 - 352
Target Start/End: Original strand, 17153071 - 17153151
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacc 352  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17153071 ttataatgattcatgaaccgaaccgttaatttattaacagttcttgaaccataaccgaaccatcttgaaccgaaccgaacc 17153151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 33703853 - 33703773
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccataactgaaccatcttgaaccgaaccgaacc 352  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  33703853 ttataatggttcacgaaccgaatcgttaatttcttaacagttcttgaaccataaccgaaccatcttgaaccgaaccgaacc 33703773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 27597412 - 27597361
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccat 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27597412 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaaccat 27597361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 12896578 - 12896627
Alignment:
Q  272 ttataatggttcacgaaccgaaccgttaatttattaacagttcttgaacc 321  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  12896578 ttataattgttcatgaaccgaaccgttaatttattaacagttcttgaacc 12896627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 17153198 - 17153232
Alignment:
Q  379 aaggaaaccacttaaactctttgttggatctttcc 413  Q
    ||||||||||||| |||||||||||||||||||||    
T  17153198 aaggaaaccacttgaactctttgttggatctttcc 17153232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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