View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8248_low_20 (Length: 308)
Name: NF8248_low_20
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8248_low_20 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 52823082 - 52823392
Alignment:
| Q |
1 |
aattttgtgaatgaaataataattattgttttcttcggcattcaactctagtaatgtcttactagtctttagacgaggacaattttgcagaaaagaaaat |
100 |
Q |
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| T |
52823082 |
aattttgtgaatgaaataataattattgttttcttcggcattcaactctagtaatgtcttactagtctctagacgaggacaattttgcagaaaagaaaat |
52823181 |
T |
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| Q |
101 |
tatataaaacatttcttaatgtttctcggtttgtgtttggacacaaatcaatttgctgtctacttgtcttgttttaggatgggttatttcgccaactaat |
200 |
Q |
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| T |
52823182 |
tatataaaacatttcttaatgtttctcggtttgtgtttggacacaaatcaatttgctatctacttgtcttgttttaggatgggttatttcgccaactaat |
52823281 |
T |
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| Q |
201 |
taaggatgaaatgttcattc---atcaattgcttgaattatttcggtaacagagagctgaattatttcagaaagtgaattttgcacccaaaatcgaaata |
297 |
Q |
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| T |
52823282 |
taaggatgaaatgttcattcataatcaattgcttgaattattttggtaacagagagctgaattatttcagaaagtgaattttgcacacaaagtcgaaata |
52823381 |
T |
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| Q |
298 |
ttcgaatgcca |
308 |
Q |
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| T |
52823382 |
ttcgaatgcca |
52823392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 6014842 - 6014742
Alignment:
| Q |
112 |
tttcttaatgtttctcggtttgtgtttggacacaaatcaatttgctgtctacttgtcttgttttaggatgggttatttcgccaactaattaaggatgaaa |
211 |
Q |
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| T |
6014842 |
tttcttaatgtctatcggtttgtgttttggcacaaatcaatttgctatctacttgtctcattttaggattggttattttgcaaactaattaaggaagaaa |
6014743 |
T |
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| Q |
212 |
t |
212 |
Q |
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| T |
6014742 |
t |
6014742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 30255803 - 30255729
Alignment:
| Q |
132 |
tgtgtttggacacaaatcaatttgctgtctacttgtcttgttttaggatgggttatttcgccaactaattaagga |
206 |
Q |
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| T |
30255803 |
tgtgtttggccacaaatcaatttgctatctacttgtctcattttaggatggattattttgccaactaattaagga |
30255729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 30255849 - 30255810
Alignment:
| Q |
8 |
tgaatgaaataataattattgttttcttcggcattcaact |
47 |
Q |
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|||| |||||||||||||||||||||||||||||| |||| |
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| T |
30255849 |
tgaacgaaataataattattgttttcttcggcattgaact |
30255810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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