View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8248_low_24 (Length: 288)
Name: NF8248_low_24
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8248_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 45 - 281
Target Start/End: Complemental strand, 4788936 - 4788700
Alignment:
| Q |
45 |
tgattgtactctcttttattcacagaaacaatggaaatgatggagttatgttatcatatatgctacacactctgttttgagttctgcctccctcctttca |
144 |
Q |
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| T |
4788936 |
tgattgtactctcttttattcacagaaacaatggaaatgatggagttatgttatcatatatgctacacactctgttttgagttctgtctccctcctttca |
4788837 |
T |
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| Q |
145 |
tggattggatggaatcatttgtcacaatgaatatgacagcagagttcattttttatgcatgcctcacactttttattcatttgtacttccatcgtttcat |
244 |
Q |
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| T |
4788836 |
tggattggatggaatcatttgtgacaatgaatatgacagcagagttcattttttatgcatgcctcacactttttattcatttgtacttccatcgtttcat |
4788737 |
T |
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| Q |
245 |
tcaatggatcaatccattcatcaacatcaccaccaaa |
281 |
Q |
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| T |
4788736 |
tcattggatcaatccattcatcaacatcaccaccaaa |
4788700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 63 - 200
Target Start/End: Original strand, 4791407 - 4791544
Alignment:
| Q |
63 |
ttcacagaaacaatggaaatgatggagttatgttatcatatatgctacacactctgttttgagttctgcctccctcctttcatggattggatggaatcat |
162 |
Q |
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| T |
4791407 |
ttcacagaaacgatggaaatgatggagttgtgttatcatatatgctacacactctgttttgagttctgtctccctcctttcatggattggatggaatcat |
4791506 |
T |
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| Q |
163 |
ttgtcacaatgaatatgacagcagagttcattttttat |
200 |
Q |
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| T |
4791507 |
ttgtgacaatgaatatgacagcagagttcattttttat |
4791544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 4796932 - 4797084
Alignment:
| Q |
63 |
ttcacagaaacaatggaaatgatggagttatgttatcatatatgctacacactctgttttgagttctgcctccctcctttcatggattggatggaatcat |
162 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4796932 |
ttcatagaaataatggaaatgatggagttatgttatcatatatgctacacactctcttttgagttctgtctccctcctttcatggattggatggaatcat |
4797031 |
T |
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| Q |
163 |
ttgtcacaatgaatatgacagcagagttca-ttttttatgcatgcctcacact |
214 |
Q |
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| T |
4797032 |
ttgtgacaatgaatatgacagcagagttcatttttttatacatgcctcacact |
4797084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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