View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8248_low_26 (Length: 277)
Name: NF8248_low_26
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8248_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 39275066 - 39274981
Alignment:
| Q |
19 |
gtacaagagtctcttatttgcatgactcttgcactaatcatgtaataaacttcttaattccaagactaaacactagacaaatgctt |
104 |
Q |
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| T |
39275066 |
gtacaagagtctcttatttgcatgactcttgcactaatcatgtaataaacttcttaattccaagactaaacactagacaaatgctt |
39274981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 188 - 264
Target Start/End: Complemental strand, 39274897 - 39274821
Alignment:
| Q |
188 |
gcactcacaattatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaacttccttcat |
264 |
Q |
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| T |
39274897 |
gcactcacaattatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaacttccttcat |
39274821 |
T |
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Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 20935349 - 20935276
Alignment:
| Q |
190 |
actcacaattatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaacttccttca |
263 |
Q |
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| T |
20935349 |
actcacaaatatttctaattttcgaagattaggtgagcttctgagcaagcaaagagcagccgaaatttccttca |
20935276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 261
Target Start/End: Complemental strand, 20953887 - 20953816
Alignment:
| Q |
190 |
actcacaattatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaacttcctt |
261 |
Q |
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| T |
20953887 |
actcacaaatatttctaattttcgaagattaggtgagcttctgagcaagcaaagagcagccgaaatttcctt |
20953816 |
T |
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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 3217732 - 3217787
Alignment:
| Q |
199 |
tatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaa |
254 |
Q |
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| T |
3217732 |
tatttccaatcttcgaagattaggtgagcttctaagcaagcaaagagcagccaaaa |
3217787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 3362635 - 3362562
Alignment:
| Q |
190 |
actcacaattatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaacttccttca |
263 |
Q |
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| T |
3362635 |
actcacaattatttccaattttcgaagattaggtgagcttttgagcaagcaaagagcagccaaaattttcttca |
3362562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 3373623 - 3373550
Alignment:
| Q |
190 |
actcacaattatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaacttccttca |
263 |
Q |
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| T |
3373623 |
actcacaaatatttctaattttttaagattaggtgagcttctgagcaagcaaagagcagctgaaatttccttca |
3373550 |
T |
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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 3379646 - 3379573
Alignment:
| Q |
190 |
actcacaattatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaacttccttca |
263 |
Q |
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| T |
3379646 |
actcacaaatatttccaattttttaaggttaggggagcttctgagcaagcaaagggcagccgaaatttccttca |
3379573 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 21238398 - 21238325
Alignment:
| Q |
190 |
actcacaattatttctaatctttgtagattaggtgagcttctaagcaagcaaagagcagccaaaacttccttca |
263 |
Q |
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| T |
21238398 |
actcacagatatttttaattttcgcagattaggtgagcttctgagcaagcagagagcagccgagatttccttca |
21238325 |
T |
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