View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8248_low_29 (Length: 257)
Name: NF8248_low_29
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8248_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 12551330 - 12551092
Alignment:
| Q |
1 |
gcatgcccatgaagtgaacaaacgtacgtaggatgttgcagggtgtgacgcagaatttaattatgaaacaggaaaactaaattgatttctaactctgaaa |
100 |
Q |
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| T |
12551330 |
gcatgcccatgaagtgaacaaacgtacgtaggatgttgcagggtgtgacgcagaatttaattatgaaacaggaaaactaaattgatttctaactctgaaa |
12551231 |
T |
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| Q |
101 |
taatgttggttgttcaattagtttagtgttagattttaaataaaagtttgtgacaacgatctaaattataacatcaagacctttgttgttttgcgatcac |
200 |
Q |
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| T |
12551230 |
taatgttggttgttcaattagtttagtgttagattttaaataaaagtttgtgacaacgatctaaattataacatcaagatctttgttgttttgcgatcac |
12551131 |
T |
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| Q |
201 |
gatcatcaactatattatataatggttttaaactagtct |
239 |
Q |
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| T |
12551130 |
gatcatcaactatattatataatggttttagactagtct |
12551092 |
T |
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