View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8248_low_3 (Length: 519)
Name: NF8248_low_3
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8248_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 244 - 501
Target Start/End: Complemental strand, 49005830 - 49005574
Alignment:
| Q |
244 |
tattagaataagaccgaactttaaaaactgaaaaaacacttacaaagttacttattcatagccatcaaagccttgcaataagtgaatcaactctttacga |
343 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
49005830 |
tattaaaataagaccgaactttaaaaactgaaaaaacgcttacaaagttacttattgatagccatcaaagccttgcgataagtgaatcaactccttacga |
49005731 |
T |
|
| Q |
344 |
gttgattcaatatttattggcaacaacactaacatttttttcttttcatagttaacgtaatttaaacttgttannnnnnnncttttcagacgttggaaca |
443 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||| |
|
|
| T |
49005730 |
gttgcttcaatatttattggcaacaacactaacatttttttcttttcatagttaacgtaatttaaactagtta-tttttttcttttcagaagttggaaca |
49005632 |
T |
|
| Q |
444 |
tgatgttaccacacatgagtttgatcacaatcaattccgtgaatattttcatccttat |
501 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49005631 |
tgatgttactacacatgagtttgatcacaatcaattccgtgaatatttttatccttat |
49005574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 80 - 230
Target Start/End: Complemental strand, 49006187 - 49006033
Alignment:
| Q |
80 |
gggagaatgctgaggtggagtagagtgttatacggcatagtggagaagaggagaatgctccgcgggggtcag----ggaggctgcttgatgtaaccattt |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
49006187 |
gggagaatgctgaggtggagtagagtgttatacggcatagtggagaagaggagaatgctccgcgggggtcagtcagggaggctgcttgatgtaaccattt |
49006088 |
T |
|
| Q |
176 |
ttaaaccctcattttaatttcagaaatgttatttagcacaatttttcaaaattgt |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49006087 |
ttaaaccctcattttaatttcagaaatgttatttagcacaatttttcaaaattgt |
49006033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 38178515 - 38178425
Alignment:
| Q |
73 |
gctaggggggagaatgctgaggtggagtagagtgttatacggcatagtggagaagaggaga--atgctccgcgggggtcagggaggctgct |
161 |
Q |
| |
|
|||||| || |||||| |||||||||| ||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
38178515 |
gctaggtggaagaatgttgaggtggaggagagtgttagacggcacggtggagaagaggagaatatgctccgcgggggtcagggaggttgct |
38178425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 38178383 - 38178340
Alignment:
| Q |
162 |
tgatgtaaccatttttaaaccctcattttaatttcagaaatgtt |
205 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
38178383 |
tgatgtaaccatttctaaaccctcattttaatttcacaaatgtt |
38178340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University