View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8248_low_31 (Length: 253)

Name: NF8248_low_31
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8248_low_31
NF8248_low_31
[»] chr1 (13 HSPs)
chr1 (18-249)||(47873936-47874167)
chr1 (18-199)||(41186129-41186310)
chr1 (24-228)||(49540291-49540495)
chr1 (111-250)||(40027219-40027357)
chr1 (123-253)||(48179422-48179552)
chr1 (32-249)||(49287444-49287659)
chr1 (124-250)||(40141007-40141136)
chr1 (20-205)||(49440175-49440358)
chr1 (111-253)||(2417717-2417861)
chr1 (134-207)||(45196881-45196954)
chr1 (111-199)||(37847303-37847391)
chr1 (18-94)||(48179622-48179699)
chr1 (18-65)||(2417667-2417714)
[»] chr3 (3 HSPs)
chr3 (132-253)||(14964364-14964485)
chr3 (131-204)||(572460-572533)
chr3 (152-204)||(529686-529738)
[»] chr7 (1 HSPs)
chr7 (143-253)||(32347364-32347474)
[»] chr6 (1 HSPs)
chr6 (163-199)||(34609134-34609170)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 47874167 - 47873936
Alignment:
Q  18 aatacttgtctaatattgaaactacaaaccataacaagtttttcctactctagtccaattttggcaaacaaaaaggaaataggtagaagcgcaaaagacc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47874167 aatacttgtctaatattgaaactacaaaccataacaagtttttcctactctagtccaattttggcaaacaaaaaggaaataggtagaagcgcaaaagacc 47874068  T
Q  118 acaagtaacacgatgtacaatatgcaagttacttaactagagaaaaatcaacctcatatcgtagatgtctaaaacaacaatccaacatcagggaatgtga 217  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47874067 acaagtaacacgatgtacaatatgcaagttactcaactggagaaaaatcaacctcatatcgtagatgtctaaaacaacaatccaacatcagggaatgtga 47873968  T
Q  218 tccatgaggagctggaagcgtaatgcattttt 249  Q
    ||||||||||||||||||||||||||||||||    
T  47873967 tccatgaggagctggaagcgtaatgcattttt 47873936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 41186310 - 41186129
Alignment:
Q  18 aatacttgtctaatattgaaactacaaaccataacaagtttttcctactctagtccaatt-ttggcaaacaaaaaggaaataggtagaagcgcaaaagac 116  Q
    ||||||||| |||||||||||||| ||||||| | |||||||| ||||  ||||| |||| ||||||||||||||||||||| ||  || | | |||||     
T  41186310 aatacttgtataatattgaaactataaaccatcaaaagttttttctacattagtcaaattattggcaaacaaaaaggaaatatgtcaaaacac-aaagat 41186212  T
Q  117 cacaagtaacacgatgtacaatatgcaagttacttaactagagaaaaatcaacctcatatcgtagatgtctaaaacaacaatc 199  Q
    || ||||||||| ||||||||||||||||||||| ||||||| || |||| | ||||||| ||||||| ||||| || |||||    
T  41186211 caaaagtaacacaatgtacaatatgcaagttactcaactagaaaataatctatctcatattgtagatgcctaaaccaccaatc 41186129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 49540291 - 49540495
Alignment:
Q  24 tgtctaatattgaaactacaaaccataacaagtttttcctactctagtccaatt-ttggcaaacaaaaaggaaataggtagaagcgcaaaagaccacaag 122  Q
    ||||||||||||||||||||||||||   ||||||||||| || | | | |||| |||||||||||||| |||||||   ||| | |||| |||||| ||    
T  49540291 tgtctaatattgaaactacaaaccattgaaagtttttccttctattgcctaattattggcaaacaaaaatgaaatagaccgaaacacaaa-gaccacgag 49540389  T
Q  123 taacacgatgtacaatatgcaagttacttaactagagaaaaatcaacctcatatcgtagatgtctaaaacaacaatccaacatcagggaatgtgatccat 222  Q
    || |||  |||| ||| ||| ||| ||  |||||||||| |||| |||||||||||||||| ||||||||||||||||||||| | ||||  || |||||    
T  49540390 tagcacagtgtataatgtgccagtcacacaactagagaataatctacctcatatcgtagatttctaaaacaacaatccaacatgaaggaacttgttccat 49540489  T
Q  223 gaggag 228  Q
    ||||||    
T  49540490 gaggag 49540495  T

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Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 250
Target Start/End: Complemental strand, 40027357 - 40027219
Alignment:
Q  111 aaagaccacaagtaacacgatgtacaatatgcaagttacttaactagagaaaaatcaacctcatatcgtagatgtctaaaacaacaatccaacatcaggg 210  Q
    |||||| ||||||||||   |||||||||||||||||||| ||| |||||| |||| |||||| |||||||| |||||||||| |||||||||||    |    
T  40027357 aaagacaacaagtaacattgtgtacaatatgcaagttactcaacaagagaataatctacctca-atcgtagaggtctaaaacatcaatccaacatgctag 40027259  T
Q  211 aatgtgatccatgaggagctggaagcgtaatgcatttttg 250  Q
    ||  || |||||||||||||||||||||||| ||||||||    
T  40027258 aaaatgttccatgaggagctggaagcgtaatacatttttg 40027219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 123 - 253
Target Start/End: Complemental strand, 48179552 - 48179422
Alignment:
Q  123 taacacgatgtacaatatgcaagttacttaactagagaaaaatcaacctcatatcgtagatgtctaaaacaacaatccaacatcagggaatgtgatccat 222  Q
    ||||||| ||||||||| |||||||||| |||||||||| |||| || |||||| || |||| |||||||| |||||  ||||  |||||  || |||||    
T  48179552 taacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat 48179453  T
Q  223 gaggagctggaagcgtaatgcatttttgcaa 253  Q
    || ||||||||||||||||||||||||||||    
T  48179452 gaagagctggaagcgtaatgcatttttgcaa 48179422  T

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Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 249
Target Start/End: Complemental strand, 49287659 - 49287444
Alignment:
Q  32 attgaaactacaaaccataacaa-gtttttcctactctagtccaatt-ttggcaaacaaaaaggaaataggtagaagcgcaaaagaccacaagtaacacg 129  Q
    ||||||||||||||||||  ||| ||||||| |||| | ||| |||| |||||||||| ||||||||||| | ||| | |||| ||||  ||||||||||    
T  49287659 attgaaactacaaaccattgcaaagtttttcttacttttgtcaaattattggcaaacagaaaggaaatagatcgaaacacaaa-gacccgaagtaacacg 49287561  T
Q  130 atgtacaatatgcaagttacttaactagagaaaaatcaacctcatatcgtagatgtctaaaacaacaatccaacatcagggaatgtgatccatgaggagc 229  Q
     |||| ||||| ||||| ||| |||||| ||| |||| ||||||||| ||||||||||||| || ||||| |||||   |||||||| | |||   ||||    
T  49287560 gtgtataatatccaagtcactcaactagggaataatctacctcatattgtagatgtctaaatcaccaatcaaacatgtaggaatgtgctgcat---gagc 49287464  T
Q  230 tggaagcgtaatgcattttt 249  Q
    ||||||| ||||||||||||    
T  49287463 tggaagcataatgcattttt 49287444  T

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Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 124 - 250
Target Start/End: Complemental strand, 40141136 - 40141007
Alignment:
Q  124 aacacgatgtacaatatgcaagttacttaactagagaaaaatcaacctcatatcgtagatgtctaaaacaacaatccaacatcagggaatgtgatccat- 222  Q
    |||||| ||||||| |||||||||||| |||||||||| |||| ||||||||| |||||||||||||||| |||||||||||  | |||| || |||||     
T  40141136 aacacggtgtacaacatgcaagttactcaactagagaataatctacctcatattgtagatgtctaaaacaccaatccaacatgtgagaatctgttccata 40141037  T
Q  223 --gaggagctggaagcgtaatgcatttttg 250  Q
      |||||||||||| ||| || ||||||||    
T  40141036 aggaggagctggaaacgtgatacatttttg 40141007  T

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Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 49440175 - 49440358
Alignment:
Q  20 tacttgtctaatattgaaactacaaaccataacaagtttttcctactctagtccaatt-ttggcaaacaaaaaggaaataggtagaagcgcaaaagacca 118  Q
    ||||||||||||||| |||||||||| |||  ||||||||| ||||| |  || |||| || ||||||||||||||||||||| ||  |  |||    ||    
T  49440175 tacttgtctaatattcaaactacaaatcatggcaagttttttctactatgatcaaattatttgcaaacaaaaaggaaataggttgagacataaat---ca 49440271  T
Q  119 caagtaacacgatgtacaatatgcaagttacttaactagagaaaaatcaacctcatatcgtagatgtctaaaacaacaatccaacat 205  Q
     |||| ||||  ||| |||||||||||||||| ||| |||||| |||| || |||| |||||||||||||||||| ||||| |||||    
T  49440272 taagtgacacattgtgcaatatgcaagttactaaaccagagaataatctacttcatgtcgtagatgtctaaaacaccaatcgaacat 49440358  T

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Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 253
Target Start/End: Original strand, 2417717 - 2417861
Alignment:
Q  111 aaagaccacaagtaacacgatgtacaatatgcaagttacttaactagagaaaaatcaacctcatatcgtagatgtctaaaacaacaatccaacatcaggg 210  Q
    ||||||||||||||||||  ||||||  || || |||||| ||||  |||| |||| ||||||||| |||||||||||||||| |||||||||||  | |    
T  2417717 aaagaccacaagtaacacagtgtacatcataca-gttactcaactgaagaataatctacctcatattgtagatgtctaaaacaccaatccaacatgtgag 2417815  T
Q  211 aatgtgatccat---gaggagctggaagcgtaatgcatttttgcaa 253  Q
    ||| || |||||   ||||||||||||||||| | |||||||||||    
T  2417816 aatctgttccatacggaggagctggaagcgtactacatttttgcaa 2417861  T

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Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 45196954 - 45196881
Alignment:
Q  134 acaatatgcaagttacttaactagagaaaaatcaacctcatatcgtagatgtctaaaacaacaatccaacatca 207  Q
    |||||||||||||||||||||||||||| |||| | ||||||| || ||||||||||||| ||||| |||||||    
T  45196954 acaatatgcaagttacttaactagagaataatctatctcatattgttgatgtctaaaacaccaatcgaacatca 45196881  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 37847391 - 37847303
Alignment:
Q  111 aaagaccacaagtaacacgatgtacaatatgcaagttacttaactagagaaaaatcaacctcatatcgtagatgtctaaaacaacaatc 199  Q
    |||||||||||||||| || |||||| |||  |||||||| ||||||| || |||| || |||||||||| ||||||||| || |||||    
T  37847391 aaagaccacaagtaacgcggtgtacagtatttaagttactcaactagaaaataatctacttcatatcgtacatgtctaaatcaccaatc 37847303  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 48179699 - 48179622
Alignment:
Q  18 aatacttgtctaatattgaaactacaaaccataacaagtttttcctactctagtccaatt-ttggcaaacaaaaagga 94  Q
    ||||||||||||||||  ||||||||||||||  |||| |||| ||||||||||| |||| ||||| | |||||||||    
T  48179699 aatacttgtctaatatgtaaactacaaaccattgcaagctttttctactctagtcaaattattggctagcaaaaagga 48179622  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 2417667 - 2417714
Alignment:
Q  18 aatacttgtctaatattgaaactacaaaccataacaagtttttcctac 65  Q
    |||||||  ||||||||||||||||||| ||| |||||||||||||||    
T  2417667 aatactttcctaatattgaaactacaaaacattacaagtttttcctac 2417714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 253
Target Start/End: Complemental strand, 14964485 - 14964364
Alignment:
Q  132 gtacaatatgcaagttacttaactagagaaaaatcaacctcatatcgtagatgtctaaaacaacaatccaacatcagggaatgtgatccatgaggagctg 231  Q
    ||||||||||||| ||||| |||||||||| |||| || |||||| |||||||||||||||| ||||| | ||||| | |   || | |||  |||||||    
T  14964485 gtacaatatgcaaattactcaactagagaataatctacttcatattgtagatgtctaaaacaccaatctaccatcaagcaccttgttgcatctggagctg 14964386  T
Q  232 gaagcgtaatgcatttttgcaa 253  Q
    ||||||||||||||||||||||    
T  14964385 gaagcgtaatgcatttttgcaa 14964364  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 572460 - 572533
Alignment:
Q  131 tgtacaatatgcaagttacttaactagagaaaaatcaacctcatatcgtagatgtctaaaacaacaatccaaca 204  Q
    |||||||||  || |||||  |||| |||||| ||| ||||||||  |||||||||||||||| ||||||||||    
T  572460 tgtacaataaccaggttacacaactggagaaagatccacctcatagtgtagatgtctaaaacaccaatccaaca 572533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 529686 - 529738
Alignment:
Q  152 aactagagaaaaatcaacctcatatcgtagatgtctaaaacaacaatccaaca 204  Q
    ||||||| || |||||||||||||  |||||||| ||||||| ||||||||||    
T  529686 aactagaaaataatcaacctcatagtgtagatgtttaaaacaccaatccaaca 529738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 253
Target Start/End: Original strand, 32347364 - 32347474
Alignment:
Q  143 aagttacttaactagagaaaaatcaacctcatatcgtagatgtctaaaacaacaatccaacatcagggaatgtgatccatgaggagctggaagcgtaatg 242  Q
    |||||| | |||||||||| |||| || ||| || |||||||||||||||| ||||| ||| | |||||   |  ||||| ||||||||||||| |||||    
T  32347364 aagttattcaactagagaataatctacttcagattgtagatgtctaaaacaccaatcgaacttgagggatctttttccataaggagctggaagcataatg 32347463  T
Q  243 catttttgcaa 253  Q
    |||||||||||    
T  32347464 catttttgcaa 32347474  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 34609170 - 34609134
Alignment:
Q  163 aatcaacctcatatcgtagatgtctaaaacaacaatc 199  Q
    |||||||||||||| |||||||||||||||| |||||    
T  34609170 aatcaacctcatattgtagatgtctaaaacaccaatc 34609134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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