View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8248_low_32 (Length: 251)

Name: NF8248_low_32
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8248_low_32
NF8248_low_32
[»] chr1 (5 HSPs)
chr1 (1-128)||(44195671-44195798)
chr1 (125-184)||(44195828-44195887)
chr1 (62-111)||(44309614-44309663)
chr1 (1-42)||(44317864-44317905)
chr1 (64-105)||(44317974-44318015)


Alignment Details
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 44195671 - 44195798
Alignment:
Q  1 cttcaacaaataaggaatgaaactgtgtacaataaatcagagatagcaccgtacagatttagagagaaaatgaaaattaaattaaaaggaaaagaggttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44195671 cttcaacaaataaggaatgaaactgtgtacaataaatcagagatagcaccgtacagattcagagagaaaatgaaaattaaattaaaaggaaaagaggttg 44195770  T
Q  101 gtgtatttaaaggatatacattgaaaat 128  Q
    |||||||||||||||||||  |||||||    
T  44195771 gtgtatttaaaggatatacgctgaaaat 44195798  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 184
Target Start/End: Original strand, 44195828 - 44195887
Alignment:
Q  125 aaatgaaattgtctatgagatgacagctaacaatacaaatttaatgtagatttgatccaa 184  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44195828 aaatgaaatcgtctatgagatgacagctaacaatacaaatttaatgtagatttgatccaa 44195887  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 44309614 - 44309663
Alignment:
Q  62 gagagaaaatgaaaattaaattaaaaggaaaagaggttggtgtatttaaa 111  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  44309614 gagaggaaatgaaaattaaattaaaagtaaaagaggttggtgtatttaaa 44309663  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 44317864 - 44317905
Alignment:
Q  1 cttcaacaaataaggaatgaaactgtgtacaataaatcagag 42  Q
    |||||| ||||||||||||||| |||| ||||||||||||||    
T  44317864 cttcaagaaataaggaatgaaattgtgcacaataaatcagag 44317905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 44317974 - 44318015
Alignment:
Q  64 gagaaaatgaaaattaaattaaaaggaaaagaggttggtgta 105  Q
    ||||||||||||||||||||||||| |||| |||||| ||||    
T  44317974 gagaaaatgaaaattaaattaaaagtaaaacaggttgatgta 44318015  T

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