View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8248_low_33 (Length: 249)
Name: NF8248_low_33
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8248_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 23334050 - 23334288
Alignment:
| Q |
1 |
ttaattgatgcatatgttacaatttaattgtcaaactattttgaaaaaaccatgtttccacgcgtagagtttttgaggaaatctattcatccttcgtata |
100 |
Q |
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| T |
23334050 |
ttaattgatgcatatgttacaatttaattgtcaaactattttgaaaaaaacatgtttccacgcgtagagtttttgaggaaatctattcatccttcgtata |
23334149 |
T |
|
| Q |
101 |
gatttgtaattttaccgtcattaaaccaacaaccaggacccctttcctcattgaatccgtgggttnnnnnnnncttgaaaacaagcaaggagattgagaa |
200 |
Q |
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| T |
23334150 |
gatttgtaattttaccgtcattaaaccaacaaccagggcccctttcctcagtgaatccgtgggttaaaaaaaacttgaaaacaagcaaggagattgaaaa |
23334249 |
T |
|
| Q |
201 |
aaggggtacatcttacaactaacaaccaactttgttcat |
239 |
Q |
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|||||||||| ||||||||||||||||||||| |||||| |
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| T |
23334250 |
aaggggtacaacttacaactaacaaccaacttcgttcat |
23334288 |
T |
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