View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8248_low_34 (Length: 246)
Name: NF8248_low_34
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8248_low_34 |
 | |
|
| [»] scaffold0713 (1 HSPs) |
| | |
|
| [»] scaffold0406 (1 HSPs) |
| | |
|
| [»] scaffold0438 (2 HSPs) |
| | |
|
| [»] scaffold2168 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 22012837 - 22013075
Alignment:
| Q |
4 |
agatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaactg--aattgatgacgatcattatcact |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
22012837 |
agatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaactgtgagttgatgacgatcattatcact |
22012936 |
T |
|
| Q |
102 |
tattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacaccctttgaacatttttcttatcgttga |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22012937 |
tattttaattatcgctattattgatatttttgtgattttataagttaaagtatttctcaaaacgggaagcacaccctttgaacatttttcttatcgttga |
22013036 |
T |
|
| Q |
202 |
aattgatgtttaaggtcatgaatattattatggtctctg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22013037 |
aattgatgtttaaggtcatgaatattattatggtctctg |
22013075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 27526116 - 27526356
Alignment:
| Q |
4 |
agatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaactg--aattgatgacgatcattatcact |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||| |
|
|
| T |
27526116 |
agatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgatttgtcgtaactgtgagttgatgacgatcattatcact |
27526215 |
T |
|
| Q |
102 |
tattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacaccctttgaaca--tttttcttatcgtt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| |||||||| |
|
|
| T |
27526216 |
tattttaattatcgctattattgatattttggtaattttataagttaaagtatttctcaaaacgggaagcacaccttttaaacattttttttttatcgtt |
27526315 |
T |
|
| Q |
200 |
gaaattgatgtttaaggtcatgaatattattatggtctctg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27526316 |
gaaattgatgtttaaggtcatgaatattattatggtctctg |
27526356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 156
Target Start/End: Complemental strand, 13143132 - 13142978
Alignment:
| Q |
4 |
agatatgacgccagacgcttcacatgcttcttc-aggagtggttagagcgcaaacatagttgattcgtcgtaac--tgaattgatgacgatcattatcac |
100 |
Q |
| |
|
||||| || |||||||||||||||||||||| | |||| ||||| ||| ||| | |||||||||||||||||| ||| |||||||||||||||||| | |
|
|
| T |
13143132 |
agatacgatgccagacgcttcacatgcttctcccagga-tggttggagagcacgcttagttgattcgtcgtaacagtgagttgatgacgatcattatcgc |
13143034 |
T |
|
| Q |
101 |
ttattttaattatcgctattattgatattttggtgattttataagttaaagtattt |
156 |
Q |
| |
|
||||||| | ||||| ||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
13143033 |
ttattttcaatatcgttattattgatatttttatgattttatatgttaaagtattt |
13142978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 27650031 - 27650112
Alignment:
| Q |
100 |
cttattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacaccctttg |
181 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
27650031 |
cttattttaattatcgttattattgatattttggtaattttataagttaaagtatttaccaaaatgggaagcacaccctttg |
27650112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 27683319 - 27683494
Alignment:
| Q |
20 |
gcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaac--tgaattgatgacgatcattatcacttattttaattatcgct |
117 |
Q |
| |
|
||||||||||||||| | || ||||| ||| ||| | |||||||||| ||||||| ||| ||||||||||||||||| |||||||| | ||||| | |
|
|
| T |
27683319 |
gcttcacatgcttctcccgggatggttggagagcacgcttagttgattcatcgtaacagtgagttgatgacgatcattattgcttattttcaatatcgtt |
27683418 |
T |
|
| Q |
118 |
attattgatattttggtgattttataagtt-aaagtatttctcaaaacgggaagcacaccctttgaacatttttct |
192 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||||||||| |||| ||| | ||||||||| ||| |||||||| |
|
|
| T |
27683419 |
attattgatatttttatgattttatatgttaaaagtatttacaaaaatggggaacacacccttcgaatatttttct |
27683494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 27690640 - 27690815
Alignment:
| Q |
20 |
gcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaac--tgaattgatgacgatcattatcacttattttaattatcgct |
117 |
Q |
| |
|
||||||||||||||| | || ||||| ||| ||| | |||||||||| ||||||| ||| ||||||||||||||||| |||||||| | ||||| | |
|
|
| T |
27690640 |
gcttcacatgcttctcccgggatggttggagagcacgcttagttgattcatcgtaacagtgagttgatgacgatcattattgcttattttcaatatcgtt |
27690739 |
T |
|
| Q |
118 |
attattgatattttggtgattttataagtt-aaagtatttctcaaaacgggaagcacaccctttgaacatttttct |
192 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||||||||| |||| ||| | ||||||||| ||| |||||||| |
|
|
| T |
27690740 |
attattgatatttttatgattttatatgttaaaagtatttacaaaaatggggaacacacccttcgaatatttttct |
27690815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 17354705 - 17354880
Alignment:
| Q |
20 |
gcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaactg--aattgatgacgatcattatcacttattttaattatcgct |
117 |
Q |
| |
|
||||||||||||||| | || ||||| ||| ||| | |||||||||| ||||||||| | ||||| ||||||||||| |||||||| | ||||| | |
|
|
| T |
17354705 |
gcttcacatgcttctcccgggatggttggagagcactcttagttgattcttcgtaactgtgagttgattacgatcattattgcttattttcaatatcgtt |
17354804 |
T |
|
| Q |
118 |
attattgatattttggtgattttataagtt-aaagtatttctcaaaacgggaagcacaccctttgaacatttttct |
192 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||||||||| |||| ||| | ||||||||| ||| |||||||| |
|
|
| T |
17354805 |
attattgatatttttatgattttatatgttaaaagtatttacaaaaatggggaacacacccttcgaatatttttct |
17354880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 235
Target Start/End: Original strand, 28039680 - 28039831
Alignment:
| Q |
81 |
ttgatgacgatcattatcacttattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacacccttt |
180 |
Q |
| |
|
||||| |||||||||||||| |||||| | ||| |||||||||||||||| ||||| || |||||||| ||| | |||| || | |||| | ||| |
|
|
| T |
28039680 |
ttgataacgatcattatcacatatttttactattaatattattgatattttg---attttctatgttaaagtgtttataaaaatggagaacacagc-ttt |
28039775 |
T |
|
| Q |
181 |
gaacatttttcttatcgttgaaa-ttgatgtttaaggtcatgaatattattatggt |
235 |
Q |
| |
|
||||||||||||| || |||||| || |||||||| ||||||||||||| |||||| |
|
|
| T |
28039776 |
gaacatttttcttgtccttgaaaatttatgtttaatgtcatgaatattaatatggt |
28039831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 9821655 - 9821727
Alignment:
| Q |
117 |
tattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacaccctttgaacatttt |
189 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||||| ||| | |||| ||| | |||||||||||||| |||| |
|
|
| T |
9821655 |
tattattgatattttgataattttatatgttaaagtgtttataaaaatggggaacacaccctttgaacttttt |
9821727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 27650115 - 27650157
Alignment:
| Q |
197 |
gttgaaattgatgtttaaggtcatgaatattattatggtctct |
239 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
27650115 |
gttgaaatttatgtttaaggtcatgaatattgatatggtctct |
27650157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 25479516 - 25479455
Alignment:
| Q |
17 |
gacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaactg |
78 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||| ||||| ||||||||||||| |||||| |
|
|
| T |
25479516 |
gacgcttcacatgcttctcttggagtggttggagatcaaacttagttgattcgtcataactg |
25479455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 14649154 - 14649396
Alignment:
| Q |
4 |
agatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaactg--aattgatgacgatcattatcact |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
14649154 |
agatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaactgtgagttgatgacgatcattatcact |
14649253 |
T |
|
| Q |
102 |
tattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacaccctttgaaca----tttttcttatcg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||| |
|
|
| T |
14649254 |
tattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaatgggaagcacaccctttgaacattttttttttttatcg |
14649353 |
T |
|
| Q |
198 |
ttgaaattgatgtttaaggtcatgaatattattatggtctctg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14649354 |
ttgaaattgatgtttaaggtcatgaatattattatggtctctg |
14649396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 14658944 - 14659186
Alignment:
| Q |
4 |
agatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaactg--aattgatgacgatcattatcact |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
14658944 |
agatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaactgtgagttgatgacgatcattatcact |
14659043 |
T |
|
| Q |
102 |
tattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacaccctttgaaca----tttttcttatcg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||| |
|
|
| T |
14659044 |
tattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaatgggaagcacaccctttgaacattttttttttttatcg |
14659143 |
T |
|
| Q |
198 |
ttgaaattgatgtttaaggtcatgaatattattatggtctctg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14659144 |
ttgaaattgatgtttaaggtcatgaatattattatggtctctg |
14659186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 81 - 240
Target Start/End: Original strand, 42565068 - 42565227
Alignment:
| Q |
81 |
ttgatgacgatcattatcacttattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacacccttt |
180 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
42565068 |
ttgatgacgattattatcacttattttaattatcgctattattggtattttggtgattttataagttaaagtatttctcaaaatggaaagcacacccttt |
42565167 |
T |
|
| Q |
181 |
gaacatttttcttatcgttgaaattgatgtttaaggtcatgaatattattatggtctctg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42565168 |
gaacatttttcttatcgttgaaattgatgtttaaggtcatgaaaattattatggtctctg |
42565227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 17654681 - 17654441
Alignment:
| Q |
1 |
tggagatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaac--tgaattgatgacgatcattatc |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| |
|
|
| T |
17654681 |
tggagatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaactgtgagttgataacgatcattatc |
17654582 |
T |
|
| Q |
99 |
acttattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacaccctttgaacatttttcttatcgt |
198 |
Q |
| |
|
| |||||| ||| |||||||||||||||| | ||||| || |||||||| ||| | |||| ||| | |||||||||||||| |||||||| || |
|
|
| T |
17654581 |
gcatattttccctattaatattattgatattttgataattttctatgttaaagtttttataaaaatggggaacacaccctttgaac-tttttcttctcaa |
17654483 |
T |
|
| Q |
199 |
tgaaattgatgtttaaggtcatgaatattattatggtctctg |
240 |
Q |
| |
|
||| | |||||||| ||||| |||||||||||||||||| |
|
|
| T |
17654482 |
tgatgctcatgtttaaagtcatcgatattattatggtctctg |
17654441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 192
Target Start/End: Complemental strand, 29290273 - 29290138
Alignment:
| Q |
59 |
tagttgattcgtcgtaactg--aattgatgacgatcattatcacttattttaattatcgctattattgatattttggtgattttataagttaaagtattt |
156 |
Q |
| |
|
|||| |||||||| |||||| | |||||||||||||||||| |||||||| | ||||| |||||||| |||||| |||||||||| ||||||||||| |
|
|
| T |
29290273 |
tagtcgattcgtcataactgtgagttgatgacgatcattatcgcttattttcaatatcgttattattgctatttttatgattttatattttaaagtattt |
29290174 |
T |
|
| Q |
157 |
ctcaaaacgggaagcacaccctttgaacatttttct |
192 |
Q |
| |
|
||||| ||| | |||||| ||||||||||||||| |
|
|
| T |
29290173 |
atcaaattggggaacacaccttttgaacatttttct |
29290138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 239
Target Start/End: Complemental strand, 47051762 - 47051604
Alignment:
| Q |
81 |
ttgatgacgatcattatcacttattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacacccttt |
180 |
Q |
| |
|
||||| ||||||||||||| |||||| | ||| |||||||||||||||| | ||||| || |||||||| ||| |||| ||| | |||||||||| |
|
|
| T |
47051762 |
ttgataacgatcattatcatatattttcactattaatattattgatattttgataattttctatgttaaagtgttttataaaatggggaacacacccttt |
47051663 |
T |
|
| Q |
181 |
gaacatttttcttatcgttgaaattgatgtttaaggtcatgaatattattatggtctct |
239 |
Q |
| |
|
||||||||||||| || |||| | | |||||||| ||||| ||||||||||||||||| |
|
|
| T |
47051662 |
gaacatttttcttctcattgatacttatgtttaaagtcatcgatattattatggtctct |
47051604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 34899778 - 34899961
Alignment:
| Q |
18 |
acgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaac--tgaattgatgacgatcattatcacttattttaattatcg |
115 |
Q |
| |
|
||||||||| ||||||| ||||| |||||||| ||||| |||||||||||| ||| |||||| |||| ||||||||||| |||||||||| | | |
|
|
| T |
34899778 |
acgcttcacgtgcttctccaggaatggttagatagcaaatttagttgattcgtaaaaactgtgaattaatgatgatcattatcatatattttaattgttg |
34899877 |
T |
|
| Q |
116 |
ctattattgatattttggtgattttataagttaaagtatttctcaaaacg-ggaagcacaccctttgaacatttttcttatcgt |
198 |
Q |
| |
|
|||||| |||||||| ||||| || ||||| ||||||||||||| | ||| |||| |||||||||||||||| ||||| |
|
|
| T |
34899878 |
ttattatagatattttacatattttttatgttaatgtatttctcaaaatgaagaaacacaatctttgaacatttttctcatcgt |
34899961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 239
Target Start/End: Original strand, 16099746 - 16099868
Alignment:
| Q |
119 |
ttattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacaccctttgaaca--tttttcttatcgttgaaattgatgtttaagg |
216 |
Q |
| |
|
|||||||||||||| | ||||| || |||||||| ||| | |||| ||| | ||||||||||||||| |||||||| || |||| | | |||||||| | |
|
|
| T |
16099746 |
ttattgatattttgataattttctatgttaaagtgtttataaaaatggggaacacaccctttgaacatttttttcttctcattgatacttatgtttaaag |
16099845 |
T |
|
| Q |
217 |
tcatgaatattattatggtctct |
239 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
16099846 |
tcatcgatattattatggtctct |
16099868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 44322943 - 44323183
Alignment:
| Q |
4 |
agatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaactg--aattgatgacgatcattatcact |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
44322943 |
agatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaactgtgagttgatgacgatcattatcact |
44323042 |
T |
|
| Q |
102 |
tattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacaccctttgaaca--tttttcttatcgtt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| |||||||| |
|
|
| T |
44323043 |
tattttaattatcgctattattgatatttttgtgattttataagttaaagtatttctcaaaacgggaagcacaccttttaaacattttttttttatcgtt |
44323142 |
T |
|
| Q |
200 |
gaaattgatgtttaaggtcatgaatattattatggtctctg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44323143 |
gaaattgatgtttaaggtcatgaatattattatggtctctg |
44323183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 2587113 - 2587337
Alignment:
| Q |
17 |
gacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaactg--aattgatgacgatcattatcacttattttaattatc |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||| ||||| ||||||||||||| |||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
2587113 |
gacgcttcacatgcttctctaggagtggttggagatcaaacttagttgattcgtcataactgtgagttgatgacgatcattatcacttattttaattatc |
2587212 |
T |
|
| Q |
115 |
gctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacaccctttgaacatttttcttatcgttgaaattgatgtttaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2587213 |
tctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacaccctttgaacatttttcttatcgttgaaattaatgtttaa |
2587312 |
T |
|
| Q |
215 |
ggtcatgaatattattatggtctct |
239 |
Q |
| |
|
|||||||| |||||||||||||||| |
|
|
| T |
2587313 |
ggtcatgattattattatggtctct |
2587337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 4 - 163
Target Start/End: Original strand, 44314764 - 44314925
Alignment:
| Q |
4 |
agatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaactg--aattgatgacgatcattatcact |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
44314764 |
agatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaactgtgagttgatgacgatcattatcact |
44314863 |
T |
|
| Q |
102 |
tattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaa |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44314864 |
tattttaattatcgctattattgatatttttgtgattttataagttaaagtatttctcaaaa |
44314925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 10414763 - 10414940
Alignment:
| Q |
17 |
gacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaactg--aattgatgacgatcattatcacttattttaattatc |
114 |
Q |
| |
|
|||||||||||||||||| | || ||| || ||| ||| | |||| |||||||| |||||| | |||||||||||||||||| |||||||| | |||| |
|
|
| T |
10414763 |
gacgcttcacatgcttctcccggggtgattggagagcacgcttagtcgattcgtcataactgtgagttgatgacgatcattatcgcttattttcaatatc |
10414862 |
T |
|
| Q |
115 |
gctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacaccctttgaacatttttct |
192 |
Q |
| |
|
| |||||||| |||||| |||||||||| |||||||||||| ||||| ||| | | |||| ||||||||||||||| |
|
|
| T |
10414863 |
gttattattgctatttttatgattttatatgttaaagtatttatcaaattggggaacgcaccttttgaacatttttct |
10414940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 39155940 - 39155718
Alignment:
| Q |
20 |
gcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaactg--aattgatgacgatcattatcacttattttaattatcgct |
117 |
Q |
| |
|
||||||||||||||| | || ||||| ||| ||| | |||||||||| ||||||||| | ||||| |||||||||||||| |||||| | ||| | |
|
|
| T |
39155940 |
gcttcacatgcttctcccgggatggttggagagcacgcttagttgattcatcgtaactgtgagttgataacgatcattatcacatattttcactattaat |
39155841 |
T |
|
| Q |
118 |
attattgatattttggtgattttataagttaaagtatttctcaaaac-gggaagcacaccctttgaacatttttcttatcgttgaaattgatgtttaagg |
216 |
Q |
| |
|
||||||||||||||| | ||||| || |||||||| ||| | |||| ||| | ||| ||||||||||||||||||| || |||| | | |||||||| | |
|
|
| T |
39155840 |
attattgatattttgataattttctatgttaaagtgtttataaaaaatggggaacacgccctttgaacatttttcttctcattgatacttatgtttaaag |
39155741 |
T |
|
| Q |
217 |
tcatgaatattattatggtctct |
239 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
39155740 |
tcatcgatattattatggtctct |
39155718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 45330854 - 45331030
Alignment:
| Q |
17 |
gacgcttcacatgcttct-tcaggagtggttagagcgcaaacatagttgattcgtcgtaactg--aattgatgacgatcattatcacttattttaattat |
113 |
Q |
| |
|
|||||||||||||||||| || ||| ||||| ||| ||| | |||| ||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
45330854 |
gacgcttcacatgcttctctcggga-tggttggagagcacgcttagtcgattcgtcgtaactgtgaattgatgacgatcattatcatttattttgattat |
45330952 |
T |
|
| Q |
114 |
cgctattattgatattttggtgattttataagttaaagtatttctcaaaac-gggaagcacaccctttgaacatttttct |
192 |
Q |
| |
|
|||||| |||||||||| | || |||| | ||||||||| | ||||| |||||||||| ||||||||||||||||| |
|
|
| T |
45330953 |
tgctattgttgatattttcttatttctata--taaaagtatttattaaaacggggaagcacaacctttgaacatttttct |
45331030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 31713169 - 31713300
Alignment:
| Q |
20 |
gcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaactg--aattgatgacgatcattatcacttattttaattatcgct |
117 |
Q |
| |
|
||||||||||||||| | || ||||| ||| ||| | |||||||||| ||||||||| | ||| |||||||||||||| |||||||| | ||||| | |
|
|
| T |
31713169 |
gcttcacatgcttctcccgggatggttggagagcacgcttagttgattcatcgtaactgtgagttggtgacgatcattatcgcttattttcaatatcgtt |
31713268 |
T |
|
| Q |
118 |
attattgatattttggtgattttataagttaaa |
150 |
Q |
| |
|
|||||||||||||| |||||||||| |||||| |
|
|
| T |
31713269 |
attattgatatttt-atgattttatatgttaaa |
31713300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 193
Target Start/End: Complemental strand, 15001936 - 15001824
Alignment:
| Q |
81 |
ttgatgacgatcattatcacttattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacacccttt |
180 |
Q |
| |
|
||||| |||||||||||||| |||||| | ||| |||||||||||||||| | ||||| || |||||||| ||| | |||| ||| | |||||||||| |
|
|
| T |
15001936 |
ttgataacgatcattatcacatattttcactattaatattattgatattttgataattttctatgttaaagtgtttataaaaatggggaacacacccttt |
15001837 |
T |
|
| Q |
181 |
gaacatttttctt |
193 |
Q |
| |
|
|| | |||||||| |
|
|
| T |
15001836 |
gagcttttttctt |
15001824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 809872 - 809748
Alignment:
| Q |
117 |
tattattgatattttggtgattttataagttaaagtatttctcaaaac--gggaagcacaccctttgaacatttttcttatcgttgaaattgatgtttaa |
214 |
Q |
| |
|
|||||||||||||||| | ||||| || |||||||| ||| | |||| ||| | |||||||||||||| ||||||||||| ||| | |||||||| |
|
|
| T |
809872 |
tattattgatattttgataattttctatgttaaagtgtttataaaaaaatggggaacacaccctttgaac-tttttcttatcaatgatgctcatgtttaa |
809774 |
T |
|
| Q |
215 |
ggtcatgaatattattatggtctctg |
240 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
809773 |
agtcatcgatattattatggtctctg |
809748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 81 - 240
Target Start/End: Original strand, 42784454 - 42784613
Alignment:
| Q |
81 |
ttgatgacgatcattatcacttattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacacccttt |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42784454 |
ttgatgacgatcattatcacttattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacacccttt |
42784553 |
T |
|
| Q |
181 |
gaacatttttcttatcgttgaaattgatgtttaaggtcatgaatattattatggtctctg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42784554 |
gaacatttttcttatcgttgaaattgatgtttaaggtcatgaatattattatggtctctg |
42784613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 5520735 - 5520500
Alignment:
| Q |
4 |
agatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaactg--aattgatgacgatcattatcact |
101 |
Q |
| |
|
|||||||||||| | ||||||||||||||| | ||||||||||||| |||||| |||||||||| || |||||| | ||||||||||||||||||||| |
|
|
| T |
5520735 |
agatatgacgccgggcgcttcacatgcttccttcggagtggttagagagcaaacttagttgattcatcataactgtgagttgatgacgatcattatcact |
5520636 |
T |
|
| Q |
102 |
tattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacaccctttgaacatttttcttatcgttga |
201 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| || |||||||| ||| | |||| ||| | |||||||||||||||||||| | || |||| |
|
|
| T |
5520635 |
tattttaattatagctattattgatattttggtgattttgtatgttaaagtgtttataaaaatggg--gaacaccctttgaacatttttcctctcattga |
5520538 |
T |
|
| Q |
202 |
aattgatgtttaaggtcatgaatattattatggtctct |
239 |
Q |
| |
|
| | |||||||| ||||| ||||||||||||||||| |
|
|
| T |
5520537 |
tacttatgtttaaagtcatcgatattattatggtctct |
5520500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 239
Target Start/End: Original strand, 15597596 - 15597754
Alignment:
| Q |
81 |
ttgatgacgatcattatcacttattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacacccttt |
180 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||| ||||||| |||||||||| |||||||||||| | |||| ||| | |||||||||| |
|
|
| T |
15597596 |
ttgatgacgatcattatcacttattttcattatctttattattaatatttttatgattttatatgttaaagtatttataaaaatggggaacacacccttt |
15597695 |
T |
|
| Q |
181 |
gaacatttttcttatcgttgaaattgatgtttaaggtcatgaatattattatggtctct |
239 |
Q |
| |
|
||| ||||||| | || |||| | | ||||| | ||||| ||||||||||||||||| |
|
|
| T |
15597696 |
gaagatttttcctctcattgatacttatgttaacagtcattgatattattatggtctct |
15597754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 27199613 - 27199505
Alignment:
| Q |
4 |
agatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaac--tgaattgatgacgatcattatcact |
101 |
Q |
| |
|
||||||||| || || |||||||||||||||||||||||||||||| ||||| | |||||||||||||||| | | | || |||||||||||||| |
|
|
| T |
27199613 |
agatatgacaccggatgcttcacatgcttcttcaggagtggttagacagcaaattttgttgattcgtcgtaacagtcagtggaacacgatcattatcaca |
27199514 |
T |
|
| Q |
102 |
tattttaat |
110 |
Q |
| |
|
||||||||| |
|
|
| T |
27199513 |
tattttaat |
27199505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 81 - 240
Target Start/End: Original strand, 18981366 - 18981525
Alignment:
| Q |
81 |
ttgatgacgatcattatcacttattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacacccttt |
180 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18981366 |
ttgatgatgatcattatcacttattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacacccttt |
18981465 |
T |
|
| Q |
181 |
gaacatttttcttatcgttgaaattgatgtttaaggtcatgaatattattatggtctctg |
240 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18981466 |
gaacatttttctcatcgttgaaattgatgtttaaggtcatgaatattattatggtctctg |
18981525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 26918580 - 26918450
Alignment:
| Q |
4 |
agatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaactg--aattgatgacgatcattatcact |
101 |
Q |
| |
|
|||||||| |||||| | |||| ||||| |||||||||||||||||| ||| || |||||||| | | |||||| | ||||||||||||||||||| | |
|
|
| T |
26918580 |
agatatgatgccagatgtttcatatgctacttcaggagtggttagagagcagacttagttgatgtgccttaactgtgagttgatgacgatcattatcaat |
26918481 |
T |
|
| Q |
102 |
tattttaattatcgctattattgatattttg |
132 |
Q |
| |
|
||||||||||||| |||||||||||||||| |
|
|
| T |
26918480 |
tattttaattatcattattattgatattttg |
26918450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 15998550 - 15998680
Alignment:
| Q |
4 |
agatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgta--actgaattgatgacgatcattatcact |
101 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||| ||||||||||||| |||||| ||| ||||||||| || ||||| ||||| |||||||||||| | |
|
|
| T |
15998550 |
agatatgacgcaagacgtttcagatgcttcttttggagtggttagagagcaaacttagctgattcgtcataacactgagttgataacgatcattatcgca |
15998649 |
T |
|
| Q |
102 |
tattttaattatcgctattattgatattttg |
132 |
Q |
| |
|
|||||| ||| |||||||||||||||| |
|
|
| T |
15998650 |
tattttccctattaatattattgatattttg |
15998680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 15256639 - 15256712
Alignment:
| Q |
83 |
gatgacgatcattatcacttattttaattatcgctattattgatattttggtgattttataagttaaagtattt |
156 |
Q |
| |
|
|||||| ||| ||||||| ||||||| || | |||||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
15256639 |
gatgacaatctttatcacatattttacatactgttattattgatattttgataattttatatgttaaagtattt |
15256712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 26341570 - 26341503
Alignment:
| Q |
171 |
cacaccctttgaacatttttcttatcgttgaaattgatgtttaaggtcatgaatattattatggtctct |
239 |
Q |
| |
|
||||||||||||||| ||||||| || |||| ||| |||||||| ||||| |||| ||||| ||||||| |
|
|
| T |
26341570 |
cacaccctttgaaca-ttttcttgtcattgatatttatgtttaaagtcatcaatactattacggtctct |
26341503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 28059546 - 28059365
Alignment:
| Q |
59 |
tagttgattcgtcgtaac--tgaattgatgacgatcattatcacttattttaattatcgctattattgatattttggtgattttataagttaaagtattt |
156 |
Q |
| |
|
|||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28059546 |
tagttgattcgtcgtatcggtgagttgatgacgatcattatcacttattttaattatcgctattattgatattttggtgattttataatttaaagtattt |
28059447 |
T |
|
| Q |
157 |
ctcaaaacgggaagcacaccctttgaacatttttcttatcgttgaaattgatgtttaaggtcatgaatattattatggtctctg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28059446 |
ctcaaaacgggaagcacaccctttgaacatttttcttatcgttgaaattgatg--taaggtcatgaatattattatggtctctg |
28059365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 28069971 - 28069790
Alignment:
| Q |
59 |
tagttgattcgtcgtaac--tgaattgatgacgatcattatcacttattttaattatcgctattattgatattttggtgattttataagttaaagtattt |
156 |
Q |
| |
|
|||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28069971 |
tagttgattcgtcgtatcggtgagttgatgacgatcattatcacttattttaattatcgctattattgatattttggtgattttataatttaaagtattt |
28069872 |
T |
|
| Q |
157 |
ctcaaaacgggaagcacaccctttgaacatttttcttatcgttgaaattgatgtttaaggtcatgaatattattatggtctctg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28069871 |
ctcaaaacgggaagcacaccctttgaacatttttcttatcgttgaaattgatg--taaggtcatgaatattattatggtctctg |
28069790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 53 - 239
Target Start/End: Complemental strand, 5706800 - 5706615
Alignment:
| Q |
53 |
caaacatagttgattcgtcgtaac--tgaattgatgacgatcattatcacttattttaattatcgctattattgatattttggtgattttataagttaaa |
150 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
5706800 |
caaacatagttgattcgtcgtaacagtgagttgatgacgat---tatcacttattttaattatcgttattattgatattttggttattttataagttaaa |
5706704 |
T |
|
| Q |
151 |
gtatttct-caaaacgggaagcacaccctttgaacatttttcttatcgttgaaattgatgtttaaggtcatgaatattattatggtctct |
239 |
Q |
| |
|
|||||| | |||| ||| | |||||||||| || ||||||||| | ||||||||| |||||||||||| ||||||||| |||||||||| |
|
|
| T |
5706703 |
gtatttataaaaaatggggaacacaccctttcaatatttttcttgttgttgaaatt-atgtttaaggtcgtgaatattaatatggtctct |
5706615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 156
Target Start/End: Complemental strand, 9437124 - 9437009
Alignment:
| Q |
41 |
gtggttagagcgcaaacatagttgattcgtcgtaactgaattgatgacgatcattatcacttattttaattatcgctattattgatattttggtgatttt |
140 |
Q |
| |
|
|||||| ||| ||| || |||||||||||||||| |||| |||||| |||||||||||||||||||| |||||| ||||||||||| ||| ||||||| |
|
|
| T |
9437124 |
gtggttggagagcatacttagttgattcgtcgtagctgagttgatggcgatcattatcacttattttcattatcattattattgataattttatgatttt |
9437025 |
T |
|
| Q |
141 |
ataagttaaagtattt |
156 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
9437024 |
atatgttaaagtattt |
9437009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 19433868 - 19434108
Alignment:
| Q |
1 |
tggagatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaactg--aattgatgacgatcattatc |
98 |
Q |
| |
|
||||||||||| ||| || | |||| ||| ||||| || ||||||||||| ||| | |||||||| | | |||||| | ||||| |||||||||||| |
|
|
| T |
19433868 |
tggagatatgatgccggatgtttcatatgtttctttagaagtggttagagagcagatttagttgatgtgccataactgtgagttgataacgatcattatc |
19433967 |
T |
|
| Q |
99 |
acttattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacaccctttgaacatttttcttatcgt |
198 |
Q |
| |
|
|| |||||| | ||| |||||||||||||||| | ||||| || ||||||| ||| | |||| ||| | || ||||||||||||||||||| || | |
|
|
| T |
19433968 |
acatatttttactattaatattattgatattttgataattttctatcttaaagtgtttataaaaatggggaacatgccctttgaacatttttcttctcat |
19434067 |
T |
|
| Q |
199 |
tgaaattgatgtttaaggtcatgaatattattatggtctct |
239 |
Q |
| |
|
||| | | |||||||| ||||| ||||||||||||||||| |
|
|
| T |
19434068 |
tgatacttatgtttaaagtcatcgatattattatggtctct |
19434108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 5735588 - 5735535
Alignment:
| Q |
4 |
agatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaac |
57 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5735588 |
agatatgacgccggacgcttcacatgcttcttcaggagtggttagagagcaaac |
5735535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 5772700 - 5772647
Alignment:
| Q |
4 |
agatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaac |
57 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5772700 |
agatatgacgccggacgcttcacatgcttcttcaggagtggttagagagcaaac |
5772647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0713
Description:
Target: scaffold0713; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 3985 - 4222
Alignment:
| Q |
4 |
agatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaac--tgaattgatgacgatcattatcact |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| | |
|
|
| T |
3985 |
agatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaactatgagttgataacgatcattatcgca |
4084 |
T |
|
| Q |
102 |
tattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacaccctttgaacatttttcttatcgttga |
201 |
Q |
| |
|
|||||| ||| |||||||||||||||| | ||||| || |||||||| ||| | |||| ||| | |||||||||||||| |||||||| || ||| |
|
|
| T |
4085 |
tattttccctattaatattattgatattttgataattttctatgttaaagtttttataaaaatggggaacacaccctttgaac-tttttcttctcaatga |
4183 |
T |
|
| Q |
202 |
aattgatgtttaaggtcatgaatattattatggtctctg |
240 |
Q |
| |
|
| |||||||| ||||| |||||||||||||||||| |
|
|
| T |
4184 |
tgctcatgtttaaagtcatcgatattattatggtctctg |
4222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 188
Target Start/End: Original strand, 28802460 - 28802646
Alignment:
| Q |
4 |
agatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaac--tgaattgatgacgatcattatcact |
101 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||| |||||| ||| ||||||||| |||| ||| |||||||||||||||||||| |
|
|
| T |
28802460 |
agatatgacgccggacgcttcacatgcttctttaggagtggttagagagcaaacttagctgattcgtcataacagtgagttgatgacgatcattatcaca |
28802559 |
T |
|
| Q |
102 |
tattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacaccctttgaacattt |
188 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| |||||||||| |||||||| ||| | |||| ||| | ||||| |||||||||||| |
|
|
| T |
28802560 |
tattttcattatcgttattattgatatttttatgattttatatgttaaagtgtttataaaaatggggaacacactctttgaacattt |
28802646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 36265624 - 36265549
Alignment:
| Q |
81 |
ttgatgacgatcattatcacttattttaattatcgctattattgatattttggtgattttataagttaaagtattt |
156 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||| ||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
36265624 |
ttgatgaggatcattatcacttattttccttatcgttattattgatatttttatgattttatatgttaaagtattt |
36265549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 34378266 - 34378312
Alignment:
| Q |
4 |
agatatgacgccagacgcttcacatgcttcttcaggagtggttagag |
50 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| ||||||||||| |
|
|
| T |
34378266 |
agatatgacgacggacgcttcacatgcttcttcagaagtggttagag |
34378312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 192
Target Start/End: Complemental strand, 8387945 - 8387834
Alignment:
| Q |
81 |
ttgatgacgatcattatcacttattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaacg-ggaagcacaccctt |
179 |
Q |
| |
|
|||||| | ||||||| |||||| ||||||||| | || |||||||||||| | ||||| || ||||||||||||||||||| | |||| |||| ||| |
|
|
| T |
8387945 |
ttgatggcaatcattaacacttaatttaattattgttaa-attgatattttgtttattttctatgttaaagtatttctcaaaatgaggaaacacagactt |
8387847 |
T |
|
| Q |
180 |
tgaacatttttct |
192 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
8387846 |
taaacatttttct |
8387834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 6023454 - 6023408
Alignment:
| Q |
59 |
tagttgattcgtcgtaactg--aattgatgacgatcattatcactta |
103 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
6023454 |
tagttgattcgtcgtaactgtgagttgatgacgatcattatcactta |
6023408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 19670550 - 19670472
Alignment:
| Q |
81 |
ttgatgacgatcattatcacttattttaattatcgctattattgatattttggtgattttataagttaaagtatttctca |
160 |
Q |
| |
|
||||||||||||| |||||| |||||||||||| | ||||||||||| || | ||||| || |||||||||||||||| |
|
|
| T |
19670550 |
ttgatgacgatcaatatcacatattttaattattgttattattgataattaacttatttt-tatgttaaagtatttctca |
19670472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 54353102 - 54352885
Alignment:
| Q |
20 |
gcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaactgaattgatgacgatcattatcacttattttaattatcgctat |
119 |
Q |
| |
|
||||||||||||||| | |||||| || ||| ||| | ||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54353102 |
gcttcacatgcttctcccggagtgattggagagcacaattagttgattcgtcaactgtgagttgatgacgatcattatcacttattttaattatagctat |
54353003 |
T |
|
| Q |
120 |
tattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacaccctttgaacatttttcttatcgttgaaattgatgtttaaggtca |
219 |
Q |
| |
|
||||||||||||||||||||| || |||||||| ||| | |||| ||| | |||||||||||||||||||||| || |||| | | |||||||| |||| |
|
|
| T |
54353002 |
tattgatattttggtgattttctatgttaaagtgtttataaaaatggg--gaacaccctttgaacatttttcttctcattgatacttatgtttaaagtca |
54352905 |
T |
|
| Q |
220 |
tgaatattattatggtctct |
239 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
54352904 |
tcgatattattatggtctct |
54352885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 108 - 224
Target Start/End: Complemental strand, 5359820 - 5359703
Alignment:
| Q |
108 |
aattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcacaccc-tttgaacatttttcttatcgttgaaattg |
206 |
Q |
| |
|
|||||| | |||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| || |||||||| |
|
|
| T |
5359820 |
aattattgttattattgttattttgatgattttataagttaaagtatttatcaaaacgggaagcacacccttttgaacatttttcttgtcattgaaattt |
5359721 |
T |
|
| Q |
207 |
atgtttaaggtcatgaat |
224 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
5359720 |
atgtataaggtcatgaat |
5359703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 11513935 - 11513806
Alignment:
| Q |
4 |
agatatgacgccagacgcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaa--ctgaattgatgacgatcattatcact |
101 |
Q |
| |
|
||||||| |||| || |||||||||||||||||| | |||||| ||| ||| || |||||||||||| |||| ||| ||||||||||||||||||| |
|
|
| T |
11513935 |
agatatggcgccggatgcttcacatgcttcttcatgggtggttggagagcacacttagttgattcgttgtaattgtgagttgatgacgatcattatca-a |
11513837 |
T |
|
| Q |
102 |
tattttaattatcgctattattgatattttg |
132 |
Q |
| |
|
|||||| ||||| | |||||||||||||||| |
|
|
| T |
11513836 |
tattttgattattgttattattgatattttg |
11513806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 239
Target Start/End: Complemental strand, 27562376 - 27562217
Alignment:
| Q |
81 |
ttgatgacgatcattatcacttattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaac-gggaagcacaccctt |
179 |
Q |
| |
|
||||| |||||||||||||| |||||| | ||| |||||||||||||||| | ||||| || |||||||| ||| | |||| ||| | ||| ||||| |
|
|
| T |
27562376 |
ttgataacgatcattatcacatattttcactattaatattattgatattttgataattttctatgttaaagtgtttataaaaaatggggaacacgccctt |
27562277 |
T |
|
| Q |
180 |
tgaacatttttcttatcgttgaaattgatgtttaaggtcatgaatattattatggtctct |
239 |
Q |
| |
|
|||||||||||||| || |||| | | |||||||| ||||| ||||||||||||||||| |
|
|
| T |
27562276 |
tgaacatttttcttctcattgatacttatgtttaaagtcatcgatattattatggtctct |
27562217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 5359870 - 5359834
Alignment:
| Q |
77 |
tgaattgatgacgatcattatcacttattttaattat |
113 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5359870 |
tgaattgatgacgatcattatcatatattttaattat |
5359834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 2548 - 2772
Alignment:
| Q |
20 |
gcttcacatgcttcttcaggagtggttagagcgcaaacatagttgattcgtcgtaac--tgaattgatgacgatcattatcacttattttaattatcgct |
117 |
Q |
| |
|
||||||||||||||| |||||||||| ||| ||||||||||||||||||| |||| ||| ||||| |||||||||||| | |||||| ||| | |
|
|
| T |
2548 |
gcttcacatgcttctctaggagtggttggagatcaaacatagttgattcgtcataactgtgagttgataacgatcattatcgcatattttccctattaat |
2647 |
T |
|
| Q |
118 |
attattgatattttggtgattttataagttaaagtatttct---caaaacgggaagcacaccctttgaacatttttcttatcgttgaaattgatgtttaa |
214 |
Q |
| |
|
||||||||||||||| | ||||| || |||||||| ||| | |||| ||| | |||||||||||||| |||||||| || ||| | |||||||| |
|
|
| T |
2648 |
attattgatattttgataattttctatgttaaagtgtttataaaaaaaatggggaacacaccctttgaac-tttttcttctcaatgatgctcatgtttaa |
2746 |
T |
|
| Q |
215 |
ggtcatgaatattattatggtctctg |
240 |
Q |
| |
|
||||| ||||||||||| |||||| |
|
|
| T |
2747 |
agtcatcgatattattatgttctctg |
2772 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0438 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0438
Description:
Target: scaffold0438; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 8749 - 8682
Alignment:
| Q |
171 |
cacaccctttgaacatttttcttatcgttgaaattgatgtttaaggtcatgaatattattatggtctct |
239 |
Q |
| |
|
||||||||||||||||||| ||| || |||| ||| |||||||| ||||| |||| ||||||||||||| |
|
|
| T |
8749 |
cacaccctttgaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattatggtctct |
8682 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0438; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 11731 - 11664
Alignment:
| Q |
171 |
cacaccctttgaacatttttcttatcgttgaaattgatgtttaaggtcatgaatattattatggtctct |
239 |
Q |
| |
|
||||||||||||||| ||||||| || |||| ||| |||||||| ||||| |||| ||||| ||||||| |
|
|
| T |
11731 |
cacaccctttgaaca-ttttcttgtcattgatatttatgtttaaagtcatcaatactattacggtctct |
11664 |
T |
|
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Target: scaffold2168 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold2168
Description:
Target: scaffold2168; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Original strand, 65 - 95
Alignment:
| Q |
4 |
agatatgacgccagacgcttcacatgcttct |
34 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
65 |
agatatgacgccagacgcttcacatgcttct |
95 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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