View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8248_low_36 (Length: 242)
Name: NF8248_low_36
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8248_low_36 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
| [»] chr8 (4 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] scaffold0538 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 23333705 - 23333932
Alignment:
| Q |
16 |
caatattgacgaagattgctgaaggatctcataggattcaagattgaaggtttgaggtatcaaatttgtggatatcaa-tttatatcaagttaaagatga |
114 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
23333705 |
caatcttgacgaagattgccgaaggatctcataggattcaagattgaagttttgaggtatcaaatttgtggatatcaaatttatatcaagttaaagatga |
23333804 |
T |
|
| Q |
115 |
tcttgatatgagcaatttagggccttggtcatctttgggttagagagttacaagattcgttaattacttgtaatcaaaccttgttgcacatcgtgcaaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23333805 |
tcttgatatgagcaatttagggccttggtcatctttgggttaaagagttacaagattcgttaattacttgtaatcaaaccttgttgcacatcgtgcaaac |
23333904 |
T |
|
| Q |
215 |
attcaatcattgtggaagaccgtagatt |
242 |
Q |
| |
|
||||||||||||||||||| ||||||| |
|
|
| T |
23333905 |
attcaatcattgtggaagattgtagatt |
23333932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 17275025 - 17275120
Alignment:
| Q |
130 |
tttagggccttggtcatcttt-gggttagagagttacaagattcgttaattacttgtaatcaaaccttgttgcacatcgtgcaaacattcaatcat |
224 |
Q |
| |
|
||||||| |||||| |||||| ||| || ||||| ||||| |||||||||||||||| |||||||||||| | || | |||||||||||||||||| |
|
|
| T |
17275025 |
tttagggtcttggtgatctttagggctaaagagtcacaagcttcgttaattacttgttatcaaaccttgtagaactttgtgcaaacattcaatcat |
17275120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 13372883 - 13372970
Alignment:
| Q |
137 |
ccttggtcatctttgggtt-agagagttacaagattcgttaattacttgtaatcaaaccttgttgcacatcgtgcaaacattcaatca |
223 |
Q |
| |
|
|||||||||||||| | || | ||||| |||||||||||||||| ||| |||||||| ||| |||||| ||||||| ||||||||| |
|
|
| T |
13372883 |
ccttggtcatcttttgatttatagagtgacaagattcgttaattgattgaaatcaaacactgtagcacatagtgcaaagattcaatca |
13372970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 13383084 - 13383171
Alignment:
| Q |
137 |
ccttggtcatctttgggtt-agagagttacaagattcgttaattacttgtaatcaaaccttgttgcacatcgtgcaaacattcaatca |
223 |
Q |
| |
|
|||||||||||||| | || | ||||| |||||||||||||||| ||| |||||||| ||| |||||| ||||||| ||||||||| |
|
|
| T |
13383084 |
ccttggtcatcttttgatttatagagtgacaagattcgttaattgattgaaatcaaacactgtagcacatagtgcaaagattcaatca |
13383171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 242
Target Start/End: Complemental strand, 10231721 - 10231536
Alignment:
| Q |
59 |
ttgaaggtttgaggtatcaaatttgtggatatca-atttatatcaagttaaagatgatcttgatatgagcaatttagggccttggtcatctttg-ggtta |
156 |
Q |
| |
|
||||||| |||| ||||||||||||||||| ||| |||| ||||||||| || | ||||||||| | |||||| ||||||| |||||| ||||| |
|
|
| T |
10231721 |
ttgaagggttgaagtatcaaatttgtggatctcagatttggatcaagttataggtaatcttgatacacatagtttaggaccttggtaatcttttaggtta |
10231622 |
T |
|
| Q |
157 |
gagagttacaagattcgttaattacttgtaatcaaaccttgttgcacatcgtgcaaacattcaatcattgtggaagaccgtagatt |
242 |
Q |
| |
|
||||| ||| ||||||||||| ||||||||||||| |||| ||||| |||||||||||||||||| |||||||||||| |||| |
|
|
| T |
10231621 |
aagagtgacataattcgttaattgcttgtaatcaaacgttgtagcacactgtgcaaacattcaatcatagtggaagaccgtggatt |
10231536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 31633885 - 31633834
Alignment:
| Q |
181 |
cttgtaatcaaaccttgttgcacatcgtgcaaacattcaatcattgtggaag |
232 |
Q |
| |
|
||||| |||||||||||| |||||| |||||||| ||||||||| ||||||| |
|
|
| T |
31633885 |
cttgtcatcaaaccttgtagcacattgtgcaaactttcaatcatagtggaag |
31633834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 31692451 - 31692646
Alignment:
| Q |
21 |
ttgacgaagattgctgaaggatctcataggattcaagatt-gaaggtttgaggtatcaaatttgtggatatcaatttatatcaagttaaagatgatcttg |
119 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| || ||| ||| | || ||| ||||||| |||||| |||||| ||||||||| || ||||||| |
|
|
| T |
31692451 |
ttgatgaagattgttgaaggatctcataggattgaaaatttgaatggttaaggcgtcaaattcgtggattcaaatttagatcaagttataggcgatcttg |
31692550 |
T |
|
| Q |
120 |
atatgagca-atttagggccttggtcatctttgggttagagagttacaagattcgttaattacttgtaatcaaaccttgttgcacatcgtgcaaac |
214 |
Q |
| |
|
|| || | ||||| | ||||||||||||||||| ||||| |||| |||||||||| ||||| ||||| ||||| |||| | |||||||| |
|
|
| T |
31692551 |
caataagtagatttaagattatggtcatctttgggttaaagagtgacaatattcgttaatggcttgtgatcaagtcttgtagcacgttgtgcaaac |
31692646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 20476254 - 20476302
Alignment:
| Q |
194 |
cttgttgcacatcgtgcaaacattcaatcattgtggaagaccgtagatt |
242 |
Q |
| |
|
||||| ||||||| |||||| ||||||| || ||||||||||||||||| |
|
|
| T |
20476254 |
cttgtagcacatcatgcaaaaattcaataatagtggaagaccgtagatt |
20476302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 224
Target Start/End: Complemental strand, 27595015 - 27594822
Alignment:
| Q |
34 |
ctgaaggatctcataggattcaagattg-aaggtttgaggtatcaaatttgtggatatca-atttatatcaagttaaagatgatcttgatatgagca-at |
130 |
Q |
| |
|
||||||||||||||| |||| |||||| |||| ||||||||| ||||| ||||| || ||||| ||||||||| || || ||||| || || | || |
|
|
| T |
27595015 |
ctgaaggatctcatatgattaaagattttaagggttgaggtattaaattcatggatctcggatttacatcaagttagaggtggtcttgctacaagtagat |
27594916 |
T |
|
| Q |
131 |
ttagggccttggtcatctttgggttagagagttacaagattcgttaattacttgtaatcaaaccttgttgcacatcgtgcaaacattcaatcat |
224 |
Q |
| |
|
|||||| |||||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||| | |||| || ||||||||||||| |
|
|
| T |
27594915 |
ttagggttttggtcatctttggattaaagagtgataagattcgttaattacttgtaatcaaaccttgtagtacattgtaataacattcaatcat |
27594822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 13794902 - 13794843
Alignment:
| Q |
173 |
gttaattacttgtaatcaaaccttgttgcacat-cgtgcaaacattcaatcattgtggaa |
231 |
Q |
| |
|
|||||||||||||||||||||||||| |||| | ||||||||||||| |||| |||||| |
|
|
| T |
13794902 |
gttaattacttgtaatcaaaccttgtagcacttgggtgcaaacattcattcatagtggaa |
13794843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 36537420 - 36537343
Alignment:
| Q |
165 |
caagattcgttaattacttgtaatcaaaccttgttgcacatcgtgcaaacattcaatcattgtggaagaccgtagatt |
242 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| | ||||| |||||||||||||||||| |||||||| |||||||| |
|
|
| T |
36537420 |
caagcttcattaattacttgtaatcaaaccttttagcacactgtgcaaacattcaatcatagtggaagatcgtagatt |
36537343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 19585648 - 19585703
Alignment:
| Q |
169 |
attcgttaattacttgtaatcaaaccttgttgcacatcgtgcaaacattcaatcat |
224 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||| || || |||||||||||||| |
|
|
| T |
19585648 |
attcgttaattacttgtaatcacaccttgtagcacttcatgaaaacattcaatcat |
19585703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0538 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0538
Description:
Target: scaffold0538; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 2592 - 2502
Alignment:
| Q |
130 |
tttagggccttggtcatctttgggtt-agagagttacaagattcgttaattacttgtaatcaaaccttgttgcacatcgtgcaaacattca |
219 |
Q |
| |
|
|||||||| |||||||||||| |||| | ||| | |||||||||||||||| |||||||||||| |||| || ||| ||||||| ||||| |
|
|
| T |
2592 |
tttagggcattggtcatcttttggtttaaagaatgacaagattcgttaattgattgtaatcaaacattgtagcgcatagtgcaaagattca |
2502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0538; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 6948 - 6858
Alignment:
| Q |
130 |
tttagggccttggtcatctttgggtt-agagagttacaagattcgttaattacttgtaatcaaaccttgttgcacatcgtgcaaacattca |
219 |
Q |
| |
|
|||||||| |||||||||||| |||| | ||| | |||||||||||||||| |||||||||||| |||| || ||| ||||||| ||||| |
|
|
| T |
6948 |
tttagggcattggtcatcttttggtttaaagaatgacaagattcgttaattgattgtaatcaaacattgtagcgcatagtgcaaagattca |
6858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University