View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8248_low_37 (Length: 241)

Name: NF8248_low_37
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8248_low_37
NF8248_low_37
[»] chr1 (19 HSPs)
chr1 (180-241)||(44195426-44195487)
chr1 (109-164)||(8737664-8737719)
chr1 (124-179)||(9371553-9371608)
chr1 (117-179)||(48999696-48999758)
chr1 (180-241)||(44317361-44317422)
chr1 (117-180)||(21906673-21906736)
chr1 (117-164)||(48596113-48596160)
chr1 (109-179)||(23663857-23663927)
chr1 (132-186)||(26465374-26465428)
chr1 (117-174)||(5049748-5049805)
chr1 (127-180)||(32175698-32175751)
chr1 (109-173)||(25095454-25095518)
chr1 (127-174)||(1345795-1345842)
chr1 (117-164)||(17967087-17967134)
chr1 (133-180)||(33048686-33048733)
chr1 (109-164)||(34307007-34307062)
chr1 (117-179)||(22070796-22070857)
chr1 (109-174)||(44310934-44310999)
chr1 (132-180)||(27430544-27430592)
[»] chr2 (9 HSPs)
chr2 (109-180)||(7444196-7444267)
chr2 (109-180)||(22575731-22575802)
chr2 (117-179)||(19686086-19686148)
chr2 (109-179)||(27861586-27861656)
chr2 (117-174)||(33014946-33015003)
chr2 (126-179)||(41302039-41302092)
chr2 (124-179)||(18580962-18581017)
chr2 (124-179)||(38698792-38698847)
chr2 (126-164)||(38565835-38565873)
[»] chr5 (9 HSPs)
chr5 (109-179)||(42879879-42879949)
chr5 (109-179)||(13382348-13382418)
chr5 (109-174)||(9409315-9409380)
chr5 (117-180)||(2677260-2677323)
chr5 (117-179)||(23963143-23963205)
chr5 (109-174)||(5578362-5578427)
chr5 (116-164)||(13490672-13490720)
chr5 (109-181)||(39537162-39537233)
chr5 (124-176)||(41871403-41871455)
[»] chr7 (8 HSPs)
chr7 (109-181)||(20394532-20394604)
chr7 (117-179)||(8389043-8389105)
chr7 (124-180)||(15678511-15678567)
chr7 (117-180)||(31072271-31072334)
chr7 (117-180)||(1623825-1623888)
chr7 (124-179)||(12383091-12383146)
chr7 (109-180)||(23305932-23306003)
chr7 (116-180)||(18667658-18667722)
[»] chr8 (8 HSPs)
chr8 (109-179)||(7972731-7972801)
chr8 (117-180)||(1981878-1981941)
chr8 (109-173)||(16730014-16730079)
chr8 (117-174)||(31597816-31597873)
chr8 (126-162)||(9137991-9138027)
chr8 (116-162)||(40971718-40971765)
chr8 (132-179)||(45117764-45117811)
chr8 (132-164)||(3762992-3763024)
[»] chr6 (9 HSPs)
chr6 (117-183)||(34043838-34043904)
chr6 (117-179)||(1603665-1603727)
chr6 (109-181)||(1423241-1423312)
chr6 (109-179)||(18675639-18675708)
chr6 (117-179)||(21442876-21442938)
chr6 (116-180)||(20990732-20990796)
chr6 (116-174)||(31130225-31130284)
chr6 (124-179)||(31473854-31473909)
chr6 (131-164)||(26817919-26817952)
[»] chr4 (10 HSPs)
chr4 (117-179)||(10094768-10094830)
chr4 (109-173)||(39480007-39480071)
chr4 (117-179)||(28803654-28803716)
chr4 (117-174)||(7413496-7413553)
chr4 (117-174)||(7459577-7459634)
chr4 (124-181)||(14032324-14032381)
chr4 (109-179)||(36214004-36214073)
chr4 (116-164)||(24610846-24610894)
chr4 (126-180)||(23935642-23935696)
chr4 (127-164)||(51315449-51315486)
[»] scaffold0093 (1 HSPs)
scaffold0093 (117-174)||(51141-51198)
[»] chr3 (12 HSPs)
chr3 (117-180)||(10993909-10993972)
chr3 (124-181)||(36641825-36641882)
chr3 (127-179)||(27941264-27941316)
chr3 (124-179)||(1418207-1418262)
chr3 (130-181)||(25071948-25071999)
chr3 (116-173)||(33100186-33100243)
chr3 (124-179)||(22918432-22918487)
chr3 (116-167)||(29714256-29714307)
chr3 (117-179)||(15761152-15761214)
chr3 (117-179)||(19157387-19157449)
chr3 (124-174)||(30378905-30378955)
chr3 (116-160)||(52448435-52448479)
[»] scaffold0311 (1 HSPs)
scaffold0311 (124-179)||(4570-4625)


Alignment Details
Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 44195426 - 44195487
Alignment:
Q  180 aaaaatatgactaaaagttgaaaatgaaaatatttaattcttttatagtattttatccaacc 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44195426 aaaaatatgactaaaagttgaaaatgaaaatatttaattcttttatagtattttatccaacc 44195487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 8737719 - 8737664
Alignment:
Q  109 tatgatctattatttaagggcccttttttcatattatgcctaagacccgtaaaact 164  Q
    |||||| |||||| |||||||||||||||||||||||||||||| |||||||||||    
T  8737719 tatgatgtattatgtaagggcccttttttcatattatgcctaaggcccgtaaaact 8737664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 9371608 - 9371553
Alignment:
Q  124 aagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||    
T  9371608 aagggcccttttttcatactatgcctaagacccgtaaaactttaggaacggccctg 9371553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 48999696 - 48999758
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||| || |||||| ||||    
T  48999696 attatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctg 48999758  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 44317361 - 44317422
Alignment:
Q  180 aaaaatatgactaaaagttgaaaatgaaaatatttaattcttttatagtattttatccaacc 241  Q
    |||||||||||||||||||||||||   |||||| |||||||||| ||||||||||||||||    
T  44317361 aaaaatatgactaaaagttgaaaattgtaatattgaattcttttaaagtattttatccaacc 44317422  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 21906673 - 21906736
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctga 180  Q
    ||||| |||||||||||||||||||||||||||||| ||| ||||| | || |||||| |||||    
T  21906673 attatgtaagggcccttttttcatattatgcctaaggcccataaaattctaggaacggacctga 21906736  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 48596160 - 48596113
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaact 164  Q
    ||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  48596160 attatataagggccctttttctatattatgcctaagacccgtaaaact 48596113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 23663927 - 23663857
Alignment:
Q  109 tatgatctattatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    |||||| |||||| |  ||| ||||||||||||||||||||||| ||||||||||| || |||||| ||||    
T  23663927 tatgatgtattatgttggggaccttttttcatattatgcctaaggcccgtaaaactctaggaacggccctg 23663857  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 26465374 - 26465428
Alignment:
Q  132 ttttttcatattatgcctaagacccgtaaaactttaagaacggtcctgaaaaata 186  Q
    ||||||||||||||||||||| ||||||||||| || |||||| |||||| ||||    
T  26465374 ttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctgaagaata 26465428  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 5049748 - 5049805
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacgg 174  Q
    ||||| |||||||| ||||||||||||||||||| | ||||||||||| || ||||||    
T  5049748 attatataagggcctttttttcatattatgcctagggcccgtaaaactctaggaacgg 5049805  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 32175751 - 32175698
Alignment:
Q  127 ggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctga 180  Q
    ||||||||||||||| |||||| ||||||||||||||| || |||||| |||||    
T  32175751 ggcccttttttcatactatgcccaagacccgtaaaactctaggaacggccctga 32175698  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 25095454 - 25095518
Alignment:
Q  109 tatgatctattatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacg 173  Q
    |||||| |||||| | |||| |||| |||||||||||||||||| ||||||||||| || |||||    
T  25095454 tatgatgtattatgttagggaccttctttcatattatgcctaaggcccgtaaaactctaggaacg 25095518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 1345842 - 1345795
Alignment:
Q  127 ggcccttttttcatattatgcctaagacccgtaaaactttaagaacgg 174  Q
    ||||||||||||||| |||||||||| || ||||||||||| ||||||    
T  1345842 ggcccttttttcatactatgcctaaggcctgtaaaactttaggaacgg 1345795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 17967134 - 17967087
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaact 164  Q
    ||||| |||||  ||||||||||||||||||||||| |||||||||||    
T  17967134 attatgtaaggatccttttttcatattatgcctaaggcccgtaaaact 17967087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 33048733 - 33048686
Alignment:
Q  133 tttttcatattatgcctaagacccgtaaaactttaagaacggtcctga 180  Q
    ||||||||| |||||||||||||||||||||| || |||||| |||||    
T  33048733 tttttcatactatgcctaagacccgtaaaactctaggaacggccctga 33048686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 34307062 - 34307007
Alignment:
Q  109 tatgatctattatttaagggcccttttttcatattatgcctaagacccgtaaaact 164  Q
    ||||||| ||||| |||||||| |||||||||||| |||||||| || ||||||||    
T  34307062 tatgatccattatgtaagggcctttttttcatattgtgcctaaggcctgtaaaact 34307007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 22070796 - 22070857
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    ||||| |||||||||||||| ||||| ||||||||| ||||||||||| || |||||| ||||    
T  22070796 attatgtaagggcccttttt-catataatgcctaaggcccgtaaaactctaggaacgggcctg 22070857  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 44310934 - 44310999
Alignment:
Q  109 tatgatctattatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacgg 174  Q
    |||||| |||||| |||||  |||||| ||| ||||||| |||||||||||||| | |||||||||    
T  44310934 tatgatgtattatgtaaggatccttttctcaaattatgcttaagacccgtaaaattctaagaacgg 44310999  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 27430592 - 27430544
Alignment:
Q  132 ttttttcatattatgcctaagacccgtaaaactttaagaacggtcctga 180  Q
    ||||||||||||||||||||| || |||||||| || |||||| |||||    
T  27430592 ttttttcatattatgcctaaggcctgtaaaactctaggaacgggcctga 27430544  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 109 - 180
Target Start/End: Original strand, 7444196 - 7444267
Alignment:
Q  109 tatgatctattatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctga 180  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||| || |||||| |||||    
T  7444196 tatgatgtattatgtaagggcccttttttcatattatgcctaagacccgtaaaactctaggaacggccctga 7444267  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 109 - 180
Target Start/End: Complemental strand, 22575802 - 22575731
Alignment:
Q  109 tatgatctattatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctga 180  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| || |||||| |||||    
T  22575802 tatgatctattatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacggccctga 22575731  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 19686086 - 19686148
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||| || |||||| ||||    
T  19686086 attatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctg 19686148  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 27861656 - 27861586
Alignment:
Q  109 tatgatctattatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    |||||| |||| | |||||||||||||||||||||||||||||| ||||||||||| || |||||| ||||    
T  27861656 tatgatgtattttgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacggccctg 27861586  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 33015003 - 33014946
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacgg 174  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||| || ||||||    
T  33015003 attatgtaagggcccttttttcatattatgcataagacccgtaaaactctaggaacgg 33014946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 41302092 - 41302039
Alignment:
Q  126 gggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    |||||||||| |||||||||||||||| ||||||||||| || |||||| ||||    
T  41302092 gggcccttttctcatattatgcctaaggcccgtaaaactctaggaacggccctg 41302039  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 18581017 - 18580962
Alignment:
Q  124 aagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    |||||||||||||||||| |||||||||| || |||||||| || |||||| ||||    
T  18581017 aagggcccttttttcatactatgcctaaggcctgtaaaactctaggaacggccctg 18580962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 38698792 - 38698847
Alignment:
Q  124 aagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    |||||||||||||||||| |||||||||| || |||||||| || |||||| ||||    
T  38698792 aagggcccttttttcatactatgcctaaggcctgtaaaactctaggaacggccctg 38698847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 38565873 - 38565835
Alignment:
Q  126 gggcccttttttcatattatgcctaagacccgtaaaact 164  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  38565873 gggctcttttctcatattatgcctaagacccgtaaaact 38565835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 42879879 - 42879949
Alignment:
Q  109 tatgatctattatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| || |||||| ||||    
T  42879879 tatgatctattatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacggccctg 42879949  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 13382418 - 13382348
Alignment:
Q  109 tatgatctattatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    ||||||| ||||| |||||||||||||||||||||||||||||| || |||||||| || |||||| ||||    
T  13382418 tatgatccattatgtaagggcccttttttcatattatgcctaaggcctgtaaaactctaggaacgggcctg 13382348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 9409380 - 9409315
Alignment:
Q  109 tatgatctattatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacgg 174  Q
    ||||||||||||| ||| | |||||||||||||||||||||||||||| ||||||| || ||||||    
T  9409380 tatgatctattatgtaatgacccttttttcatattatgcctaagacccataaaactctaggaacgg 9409315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 2677260 - 2677323
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctga 180  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||||||| || |||||| |||||    
T  2677260 attatgtaagggccctttttttatattatgcctaaggcccgtaaaactctaggaacgggcctga 2677323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 23963143 - 23963205
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    ||||| |||||||||||||||||||||||||||||| ||  ||||||| || |||||| ||||    
T  23963143 attatgtaagggcccttttttcatattatgcctaaggcctataaaactctaggaacgggcctg 23963205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 5578427 - 5578362
Alignment:
Q  109 tatgatctattatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacgg 174  Q
    |||||| |||||| |||||| | |||||||||||||||| |||| ||||||||||| || ||||||    
T  5578427 tatgatgtattatgtaagggactttttttcatattatgcttaaggcccgtaaaactctaggaacgg 5578362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 13490672 - 13490720
Alignment:
Q  116 tattatttaagggcccttttttcatattatgcctaagacccgtaaaact 164  Q
    |||||| ||| |||||||||||||||||||||||||| || ||||||||    
T  13490672 tattatgtaatggcccttttttcatattatgcctaaggcctgtaaaact 13490720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 39537233 - 39537162
Alignment:
Q  109 tatgatctattatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctgaa 181  Q
    |||||| |||||| |||||||||||||| |||||||||| |||| || | |||||| || |||||| ||||||    
T  39537233 tatgatgtattatgtaagggcccttttt-catattatgcataaggcctgcaaaactctaggaacggccctgaa 39537162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 41871403 - 41871455
Alignment:
Q  124 aagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtc 176  Q
    |||| ||||||||||||| |||||||||| || |||||||| || ||||||||    
T  41871403 aaggacccttttttcatactatgcctaaggcctgtaaaactctaggaacggtc 41871455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 20394604 - 20394532
Alignment:
Q  109 tatgatctattatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctgaa 181  Q
    |||||| |||||| |||||| |||||||| ||||||||| |||| ||||||||||||||||||||| ||||||    
T  20394604 tatgatgtattatgtaagggacctttttttatattatgcataaggcccgtaaaactttaagaacggccctgaa 20394532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 8389105 - 8389043
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||| || |||||| ||||    
T  8389105 attatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctg 8389043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 15678567 - 15678511
Alignment:
Q  124 aagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctga 180  Q
    |||||||||||||||||| |||||||||||||||||||||| || |||||| |||||    
T  15678567 aagggcccttttttcatactatgcctaagacccgtaaaactctaggaacggccctga 15678511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 31072334 - 31072271
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctga 180  Q
    ||||| |||||||||||||||||||||||||||||| ||| ||||||| || |||||| |||||    
T  31072334 attatgtaagggcccttttttcatattatgcctaaggcccataaaactctaggaacgggcctga 31072271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 1623825 - 1623888
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctga 180  Q
    ||||| ||| ||||||||||||||||||||||||||  |||||||||| || |||||| |||||    
T  1623825 attatgtaaaggcccttttttcatattatgcctaaggtccgtaaaactctaggaacgggcctga 1623888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 12383091 - 12383146
Alignment:
Q  124 aagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    |||||||||||||||||| |||||||||| ||||||||||| || |||||| ||||    
T  12383091 aagggcccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 12383146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 180
Target Start/End: Original strand, 23305932 - 23306003
Alignment:
Q  109 tatgatctattatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctga 180  Q
    |||||| |||||| ||||| ||||||||||| | |||||||||||||| ||||||  || |||||| |||||    
T  23305932 tatgatatattatgtaaggacccttttttcaaactatgcctaagacccttaaaacgctaggaacggccctga 23306003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 18667658 - 18667722
Alignment:
Q  116 tattatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctga 180  Q
    |||||| |||| ||||| |||| |||||||||||||| ||||||||||  || |||||| |||||    
T  18667658 tattatgtaagagccctatttttatattatgcctaaggcccgtaaaacactaggaacggccctga 18667722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 7972801 - 7972731
Alignment:
Q  109 tatgatctattatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| ||| ||||||| || |||||| ||||    
T  7972801 tatgatctattatgtaaggacccttttttcatattatgcctaaggcccataaaactctaggaacggccctg 7972731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 1981878 - 1981941
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctga 180  Q
    ||||| ||||| |||||||||||||||||| ||||| ||||||||||| || |||||| |||||    
T  1981878 attatataaggacccttttttcatattatgtctaaggcccgtaaaactctaggaacgggcctga 1981941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 16730014 - 16730079
Alignment:
Q  109 tatgatctattatttaagggccctttt-ttcatattatgcctaagacccgtaaaactttaagaacg 173  Q
    |||||| |||||| |||||| |||||| ||||||||||||||||| ||||||||||| || |||||    
T  16730014 tatgatgtattatgtaagggacctttttttcatattatgcctaaggcccgtaaaactctaggaacg 16730079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 31597816 - 31597873
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacgg 174  Q
    ||||| |||||| ||||||||||||||||||||||| || |||||||| || ||||||    
T  31597816 attatgtaagggtccttttttcatattatgcctaaggcctgtaaaactctaggaacgg 31597873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 9137991 - 9138027
Alignment:
Q  126 gggcccttttttcatattatgcctaagacccgtaaaa 162  Q
    ||||||||||||||||||||||||||| |||||||||    
T  9137991 gggcccttttttcatattatgcctaaggcccgtaaaa 9138027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 40971718 - 40971765
Alignment:
Q  116 tattatttaaggg-cccttttttcatattatgcctaagacccgtaaaa 162  Q
    |||||| |||||| |||||||||||||||||||||||| |||||||||    
T  40971718 tattatgtaagggacccttttttcatattatgcctaaggcccgtaaaa 40971765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 45117764 - 45117811
Alignment:
Q  132 ttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    ||||||||||||||||||||| ||||||||||| || |||||| ||||    
T  45117764 ttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctg 45117811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 3762992 - 3763024
Alignment:
Q  132 ttttttcatattatgcctaagacccgtaaaact 164  Q
    ||||||||||||||||||||| |||||||||||    
T  3762992 ttttttcatattatgcctaaggcccgtaaaact 3763024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 34043838 - 34043904
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctgaaaa 183  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||||||| || |||||| ||||||||    
T  34043838 attatgtaagggcccttttttcatattatgcgtaaggcccgtaaaactctaggaacgggcctgaaaa 34043904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 1603665 - 1603727
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||||||| || |||||| ||||    
T  1603665 attatgtaagggccctttttttatattatgcctaaggcccgtaaaactctaggaacgggcctg 1603727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 1423241 - 1423312
Alignment:
Q  109 tatgatctattatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctgaa 181  Q
    |||||| |||||| ||||||||||||| |||||||||||||||| | ||||||||| || |||||| ||||||    
T  1423241 tatgatgtattatgtaagggccctttt-tcatattatgcctaaggctcgtaaaactctaggaacggccctgaa 1423312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 18675639 - 18675708
Alignment:
Q  109 tatgatctattatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    |||||| |||||| ||||||||||||| ||||||||||| |||| ||| ||||||| || |||||||||||    
T  18675639 tatgatgtattatgtaagggccctttt-tcatattatgcttaaggcccataaaactctaggaacggtcctg 18675708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 21442876 - 21442938
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    ||||| |||||| ||||||||||||||||||||||||| | ||||||| || |||||| ||||    
T  21442876 attatataagggtccttttttcatattatgcctaagactcataaaactctaggaacgggcctg 21442938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 20990732 - 20990796
Alignment:
Q  116 tattatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctga 180  Q
    |||||| |||||||||| |||| |||||||||||||| ||||||||||  || |||||| |||||    
T  20990732 tattatgtaagggccctatttttatattatgcctaaggcccgtaaaacgctaggaacggccctga 20990796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 31130225 - 31130284
Alignment:
Q  116 tattatttaagggcccttttt-tcatattatgcctaagacccgtaaaactttaagaacgg 174  Q
    |||||| |||||| || |||| ||||||||||||||||| |||||||||| |||||||||    
T  31130225 tattatataagggaccattttctcatattatgcctaagatccgtaaaactctaagaacgg 31130284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 31473909 - 31473854
Alignment:
Q  124 aagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    |||||||||||||||||| |||||||||| || |||||||| || |||||| ||||    
T  31473909 aagggcccttttttcatactatgcctaaggcctgtaaaactctaggaacggccctg 31473854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 26817919 - 26817952
Alignment:
Q  131 cttttttcatattatgcctaagacccgtaaaact 164  Q
    ||||| ||||||||||||||||||||||||||||    
T  26817919 cttttctcatattatgcctaagacccgtaaaact 26817952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 10094830 - 10094768
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||| || |||||| ||||    
T  10094830 attatataagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctg 10094768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 39480071 - 39480007
Alignment:
Q  109 tatgatctattatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacg 173  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| ||| ||||||| || |||||    
T  39480071 tatgatctattatgtaaggacccttttttcatattatgcctaaggcccataaaactctaggaacg 39480007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 28803716 - 28803654
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    ||||| |||||||| ||||||||||||||||||||| ||||||||||| || |||||| ||||    
T  28803716 attatgtaagggccattttttcatattatgcctaaggcccgtaaaactctaggaacgggcctg 28803654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 7413553 - 7413496
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacgg 174  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||||||| || ||||||    
T  7413553 attatgtaagggcccttttttcatattatgcgtaaggcccgtaaaactctaggaacgg 7413496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 7459634 - 7459577
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacgg 174  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||||||| || ||||||    
T  7459634 attatgtaagggcccttttttcatattatgcgtaaggcccgtaaaactctaggaacgg 7459577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 14032381 - 14032324
Alignment:
Q  124 aagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctgaa 181  Q
    |||||||||||||||||| |||||||||| ||||||||||| || |||||| ||||||    
T  14032381 aagggcccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctgaa 14032324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 36214004 - 36214073
Alignment:
Q  109 tatgatctattatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    ||||||||||||| |||||||||||||||||||||||| | |||  |||||||||| || |||||| ||||    
T  36214004 tatgatctattatgtaagggcccttttttcatattatgtc-aaggtccgtaaaactctaggaacggccctg 36214073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 24610894 - 24610846
Alignment:
Q  116 tattatttaagggcccttttttcatattatgcctaagacccgtaaaact 164  Q
    |||||| ||||||||||||| ||||||||||||||| ||| ||||||||    
T  24610894 tattatgtaagggcccttttctcatattatgcctaaaacctgtaaaact 24610846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 23935696 - 23935642
Alignment:
Q  126 gggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctga 180  Q
    ||||||| || |||||||||| ||||| ||||||||||| || ||||||||||||    
T  23935696 gggccctcttctcatattatgtctaaggcccgtaaaactctaggaacggtcctga 23935642  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 51315449 - 51315486
Alignment:
Q  127 ggcccttttttcatattatgcctaagacccgtaaaact 164  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  51315449 ggcccttttttcatactatgcctaacacccgtaaaact 51315486  T

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Target: scaffold0093 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 51141 - 51198
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacgg 174  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  51141 attatgtaagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgg 51198  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 10993972 - 10993909
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctga 180  Q
    ||||| |||||||| ||||||||||||||||||||| ||||||||||| || |||||| |||||    
T  10993972 attatgtaagggccattttttcatattatgcctaaggcccgtaaaactctaggaacgggcctga 10993909  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 36641825 - 36641882
Alignment:
Q  124 aagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctgaa 181  Q
    |||||||||||||||||| |||||||||| ||||||||||| || |||||| ||||||    
T  36641825 aagggcccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctgaa 36641882  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 27941316 - 27941264
Alignment:
Q  127 ggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    |||||||||||||||||||||||||| ||||||||||| || |||||| ||||    
T  27941316 ggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctg 27941264  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 1418262 - 1418207
Alignment:
Q  124 aagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    ||||||||||||||||||||||||||||| || |||||||| || |||||| ||||    
T  1418262 aagggcccttttttcatattatgcctaaggcctgtaaaactctaggaacggccctg 1418207  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 25071948 - 25071999
Alignment:
Q  130 ccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctgaa 181  Q
    ||||||||||||||||||||||| ||||||||||| || |||||| ||||||    
T  25071948 ccttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctgaa 25071999  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 33100243 - 33100186
Alignment:
Q  116 tattatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacg 173  Q
    |||||| ||||| ||||||| ||||||||||||||||||| |||||||| || |||||    
T  33100243 tattatgtaaggccccttttctcatattatgcctaagacctgtaaaactctaggaacg 33100186  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 22918432 - 22918487
Alignment:
Q  124 aagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    |||||||||||||||||| |||||||||| || |||||||| || |||||| ||||    
T  22918432 aagggcccttttttcatactatgcctaaggcctgtaaaactctaggaacggccctg 22918487  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 29714256 - 29714307
Alignment:
Q  116 tattatttaagggcccttttttcatattatgcctaagacccgtaaaacttta 167  Q
    |||||| |||||| || ||| |||||||||||||||| ||||||||||||||    
T  29714256 tattatataagggaccctttctcatattatgcctaaggcccgtaaaacttta 29714307  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 15761152 - 15761214
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    ||||| ||||||||||||||||||||||||| ||||  | |||||||| || |||||| ||||    
T  15761152 attatgtaagggcccttttttcatattatgcttaaggtctgtaaaactctaggaacgggcctg 15761214  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 19157387 - 19157449
Alignment:
Q  117 attatttaagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    ||||| ||||||||||||||||||||||| | |||| |||||| |||| || |||||| ||||    
T  19157387 attatgtaagggcccttttttcatattatacttaaggcccgtagaactctaggaacgggcctg 19157449  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 30378905 - 30378955
Alignment:
Q  124 aagggcccttttttcatattatgcctaagacccgtaaaactttaagaacgg 174  Q
    |||||||||||||||||| |||||||||| || |||||||| || ||||||    
T  30378905 aagggcccttttttcatactatgcctaaggcctgtaaaactctaggaacgg 30378955  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 52448435 - 52448479
Alignment:
Q  116 tattatttaagggcccttttttcatattatgcctaagacccgtaa 160  Q
    |||||| |||||||||| |||| |||||||||||||| |||||||    
T  52448435 tattatgtaagggccctatttttatattatgcctaaggcccgtaa 52448479  T

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Target: scaffold0311 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 4625 - 4570
Alignment:
Q  124 aagggcccttttttcatattatgcctaagacccgtaaaactttaagaacggtcctg 179  Q
    |||| ||||||||||||| |||||||||| ||||||||||| || |||||| ||||    
T  4625 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 4570  T

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