View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8248_low_38 (Length: 240)

Name: NF8248_low_38
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8248_low_38
NF8248_low_38
[»] chr7 (12 HSPs)
chr7 (1-224)||(2329942-2330165)
chr7 (1-224)||(2337841-2338064)
chr7 (1-139)||(1550474-1550612)
chr7 (1-147)||(2321444-2321590)
chr7 (1-139)||(1541240-1541378)
chr7 (1-139)||(3955232-3955370)
chr7 (1-140)||(1106251-1106390)
chr7 (1-140)||(1604638-1604777)
chr7 (1-139)||(1088902-1089040)
chr7 (1-139)||(1596308-1596446)
chr7 (1-139)||(3852754-3852892)
chr7 (1-139)||(1557184-1557322)
[»] scaffold0491 (2 HSPs)
scaffold0491 (1-139)||(5777-5915)
scaffold0491 (1-139)||(890-1028)
[»] chr8 (4 HSPs)
chr8 (1-139)||(18723284-18723422)
chr8 (1-139)||(18748936-18749074)
chr8 (1-139)||(18739011-18739149)
chr8 (1-139)||(18743975-18744113)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2329942 - 2330165
Alignment:
Q  1 tatctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatcgaatcgaactat 100  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2329942 tatctacgggcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatcgaatcgaactat 2330041  T
Q  101 agttgttggaacaattggatatatagctccaggtaaatttttcattgttctttattatcttattattgcatttttccattaaatatgatacataacatga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2330042 agttgttggaacaattggatatatagctccaggtaaatttttcattgttctttattatcttattattgcatttttccatcaaatatgatacataacatga 2330141  T
Q  201 gcattcatcatctacccaaataac 224  Q
    ||||||||||||||||||||||||    
T  2330142 gcattcatcatctacccaaataac 2330165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2337841 - 2338064
Alignment:
Q  1 tatctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatcgaatcgaactat 100  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  2337841 tatctactggcaatatcttgctaaactcggagtggaagcctagtgtttctgactttggcacatctcgaatccttcaatatgattcatcaaatcgaactat 2337940  T
Q  101 agttgttggaacaattggatatatagctccaggtaaatttttcattgttctttattatcttattattgcatttttccattaaatatgatacataacatga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2337941 agttgttggaacaattggatatatagctccaggtaaatttttcattgttctttattatcttattattgaatttttccattaaatatgatacataacatga 2338040  T
Q  201 gcattcatcatctacccaaataac 224  Q
    ||||||||||||||||||||||||    
T  2338041 gcattcatcatctacccaaataac 2338064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 1550612 - 1550474
Alignment:
Q  1 tatctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatcgaatcgaactat 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||||||| |||||||||||    
T  1550612 tatctactagcaatatcttgctaaactctgagtggaaggctagtgtctctgactttggcacagctcgattccttcaatatgattcatccaatcgaactat 1550513  T
Q  101 agttgttggaacaattggatatatagctccaggtaaatt 139  Q
    ||||| |||||| ||||||||||||||||| ||||||||    
T  1550512 agttgctggaactattggatatatagctcccggtaaatt 1550474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 2321444 - 2321590
Alignment:
Q  1 tatctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatcgaatcgaactat 100  Q
    ||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| ||| ||||||||||||||||||||||||| || ||||||||    
T  2321444 tatctaccagcaatatcttgctaaactctgagtggcatcctagtgtttctgactttggaacagctcgactccttcaatatgattcatcaaaccgaactat 2321543  T
Q  101 agttgttggaacaattggatatatagctccaggtaaatttttcattg 147  Q
    ||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  2321544 agttgctggaaccattggatatatagctcctggtaaatttttcattg 2321590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 1541378 - 1541240
Alignment:
Q  1 tatctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatcgaatcgaactat 100  Q
    ||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  1541378 tatctactagcaatatcttgctaaactctgagtggcaggctagtgtgtctgactttggcacagctcgactccttcaatatgattcatccaatcgaactat 1541279  T
Q  101 agttgttggaacaattggatatatagctccaggtaaatt 139  Q
    ||||  |||||| ||||||||||||||||| ||||||||    
T  1541278 agtttctggaactattggatatatagctcctggtaaatt 1541240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 3955370 - 3955232
Alignment:
Q  1 tatctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatcgaatcgaactat 100  Q
    |||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| | ||||||||||||||||||||||||| |||| ||| ||    
T  3955370 tatctactagcaatatcttgctaaactcagaatggcagcctagtgtttctgactttggcatagctcgactccttcaatatgattcatctaatcaaacaat 3955271  T
Q  101 agttgttggaacaattggatatatagctccaggtaaatt 139  Q
    ||||| |||||| ||||||||||||||||| ||||||||    
T  3955270 agttggtggaactattggatatatagctcctggtaaatt 3955232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 1106251 - 1106390
Alignment:
Q  1 tatctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatcgaatcgaactat 100  Q
    |||||| |||||||||||||||||||||||||||| || | |||||  |||||||||||||| ||||||||||||||||||||||||| |||||||| ||    
T  1106251 tatctagtagcaatatcttgctaaactctgagtggcaggccagtgtcgctgactttggcacagctcgactccttcaatatgattcatccaatcgaacaat 1106350  T
Q  101 agttgttggaacaattggatatatagctccaggtaaattt 140  Q
    ||||| |||||| ||||||||||||||||| |||||||||    
T  1106351 agttgctggaactattggatatatagctcctggtaaattt 1106390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 1604638 - 1604777
Alignment:
Q  1 tatctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatcgaatcgaactat 100  Q
    |||||| ||||||||| |||||||||| ||||||| || ||||||||| ||||||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  1604638 tatctagtagcaatatattgctaaactatgagtggcaggctagtgtttgtgactttggcacagctcgactccttcaatataattcatccaatcgaactat 1604737  T
Q  101 agttgttggaacaattggatatatagctccaggtaaattt 140  Q
    ||||| |||||| ||||||||||||||||| |||||||||    
T  1604738 agttgctggaactattggatatatagctcctggtaaattt 1604777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 1088902 - 1089040
Alignment:
Q  1 tatctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatcgaatcgaactat 100  Q
    ||||||||||||||||||||||||||||||||||| || | |||||  | |||||||||||| ||||||||||||||||||||||||| |||||||| ||    
T  1088902 tatctactagcaatatcttgctaaactctgagtggcaggccagtgtcgcggactttggcacagctcgactccttcaatatgattcatccaatcgaacaat 1089001  T
Q  101 agttgttggaacaattggatatatagctccaggtaaatt 139  Q
    ||||| |||||| ||||||||||||||||| ||||||||    
T  1089002 agttgctggaactattggatatatagctcctggtaaatt 1089040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 1596308 - 1596446
Alignment:
Q  1 tatctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatcgaatcgaactat 100  Q
    |||||| |||||||||||| ||||||||||| ||| |  ||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  1596308 tatctagtagcaatatcttactaaactctgaatggcatgctagtgtttgtgactttggcacatcccgactccttcaatatgattcatcaaatcgaactat 1596407  T
Q  101 agttgttggaacaattggatatatagctccaggtaaatt 139  Q
    ||||| |||||| ||||||||||||||||| ||||||||    
T  1596408 agttgctggaactattggatatatagctcctggtaaatt 1596446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 3852754 - 3852892
Alignment:
Q  1 tatctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatcgaatcgaactat 100  Q
    ||||||||||||||||||| |||||||| || ||| |||||||||||||||||||||| | | ||||||||||||||| ||||||||| |||||||| ||    
T  3852754 tatctactagcaatatctttctaaactcggaatggcagcctagtgtttctgactttggtatagctcgactccttcaatgtgattcatccaatcgaacaat 3852853  T
Q  101 agttgttggaacaattggatatatagctccaggtaaatt 139  Q
    ||||| |||||| ||||||||||||||||| ||||||||    
T  3852854 agttgctggaactattggatatatagctcctggtaaatt 3852892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 1557322 - 1557184
Alignment:
Q  1 tatctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatcgaatcgaactat 100  Q
    |||||| ||||||||| ||  | |||||||||||| || ||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  1557322 tatctagtagcaatatatttgttaactctgagtggcaggctagtgtttgtgactttggcacagctcgactccttcaatatgattcatccaatcgaactat 1557223  T
Q  101 agttgttggaacaattggatatatagctccaggtaaatt 139  Q
    ||||| |||||| ||||||||||| ||||| ||||||||    
T  1557222 agttgctggaactattggatatattgctcctggtaaatt 1557184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 5915 - 5777
Alignment:
Q  1 tatctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatcgaatcgaactat 100  Q
    ||||||||||||||||||||||||||||||||||| || | ||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||    
T  5915 tatctactagcaatatcttgctaaactctgagtggcaggccagtgtttgtgacttcggcacagctcgactccttcaatatgattcatccaatcgaactat 5816  T
Q  101 agttgttggaacaattggatatatagctccaggtaaatt 139  Q
    ||||| |||||| ||||||||||||||||| ||||||||    
T  5815 agttgctggaactattggatatatagctccgggtaaatt 5777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 1028 - 890
Alignment:
Q  1 tatctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatcgaatcgaactat 100  Q
    ||||||||||||||||||||||||||||||||||| || | ||||||| |||||| |||| | |||| |||||||||||||||||||| |||||||||||    
T  1028 tatctactagcaatatcttgctaaactctgagtggcaggccagtgtttgtgacttcggcatagctcggctccttcaatatgattcatccaatcgaactat 929  T
Q  101 agttgttggaacaattggatatatagctccaggtaaatt 139  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  928 agttgctggaactattggatatatagctccaggtaaatt 890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 18723422 - 18723284
Alignment:
Q  1 tatctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatcgaatcgaactat 100  Q
    ||||||||||||||||||||||||||||||||||| || | ||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||    
T  18723422 tatctactagcaatatcttgctaaactctgagtggcaggccagtgtttgtgacttcggcacagctcgactccttcaatatgattcatccaatcgaactat 18723323  T
Q  101 agttgttggaacaattggatatatagctccaggtaaatt 139  Q
    ||||| |||||| ||||||||||||||||| ||||||||    
T  18723322 agttgctggaactattggatatatagctccgggtaaatt 18723284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 18749074 - 18748936
Alignment:
Q  1 tatctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatcgaatcgaactat 100  Q
    ||||||||||||||||||||||||||||||||||| || | ||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||    
T  18749074 tatctactagcaatatcttgctaaactctgagtggcaggccagtgtttgtgacttcggcacagctcgactccttcaatatgattcatccaatcgaactat 18748975  T
Q  101 agttgttggaacaattggatatatagctccaggtaaatt 139  Q
    ||||| |||||| ||||||||||||||||| ||||||||    
T  18748974 agttgctggaactattggatatatagctccgggtaaatt 18748936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 18739149 - 18739011
Alignment:
Q  1 tatctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatcgaatcgaactat 100  Q
    ||||||||||||||||||||||||||||||||||| || | ||||||| |||||| |||| | |||| |||||||||||||||||||| |||||||||||    
T  18739149 tatctactagcaatatcttgctaaactctgagtggcaggccagtgtttgtgacttcggcatagctcggctccttcaatatgattcatccaatcgaactat 18739050  T
Q  101 agttgttggaacaattggatatatagctccaggtaaatt 139  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  18739049 agttgctggaactattggatatatagctccaggtaaatt 18739011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 18744113 - 18743975
Alignment:
Q  1 tatctactagcaatatcttgctaaactctgagtggaagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatcgaatcgaactat 100  Q
    ||||||||||||||||||||||||||||||||||| || | ||||||| |||||| |||| | |||| |||||||||||||||||||| |||||||||||    
T  18744113 tatctactagcaatatcttgctaaactctgagtggcaggccagtgtttgtgacttcggcatagctcggctccttcaatatgattcatccaatcgaactat 18744014  T
Q  101 agttgttggaacaattggatatatagctccaggtaaatt 139  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  18744013 agttgctggaactattggatatatagctccaggtaaatt 18743975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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