View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8248_low_39 (Length: 238)
Name: NF8248_low_39
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8248_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 26192659 - 26192438
Alignment:
| Q |
16 |
ctaccaactccgtagaagatctcccaattcctaatttggatcatacagaagctttcaagacaggatatttcagtttggatgatcttcacattggaaatgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
26192659 |
ctaccaactccgtagaagatctcccaattcctaacttggatcatacagaagctttcaagacaggatatttcagttttgatgatcttcacgttggaaatgt |
26192560 |
T |
|
| Q |
116 |
aatgaccctccaatttccggtccaagaagtttctccttacctctcnnnnnnngaggccgactccattcctttctcgatgtcacaactcccaagtattctt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26192559 |
aatgaccctccaatttccggtccaagaagtttctccatacctctcaaaaaaagaggccgactccattcctttctcgatgtcacaactcccaagtattctt |
26192460 |
T |
|
| Q |
216 |
caactcttttcaatccctgaag |
237 |
Q |
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|||||||||||||||||||||| |
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| T |
26192459 |
caactcttttcaatccctgaag |
26192438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 26176469 - 26176253
Alignment:
| Q |
17 |
taccaactccgtagaagatctcccaattcctaatttggatcatacagaagctttcaagacaggatatttcagtttggatgatcttcacattggaaatgta |
116 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
26176469 |
taccaactccgcagaagatctcccaattcctaacttggatcatacagaagctttcaagacaggatattttagtttggatgatcttcacgttggaaatgta |
26176370 |
T |
|
| Q |
117 |
atgaccctccaatttccggtccaagaagtttctccttacctctcnnnnnnngaggccgactccattcctttctcgatgtcacaactcccaagtattcttc |
216 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26176369 |
atgaccttccaatttccggtccaagaagtttctccttacctctcaaaaaaagaggccaactccattcctttctcgatgtcacaactcccaagtattcttc |
26176270 |
T |
|
| Q |
217 |
aactcttttcaatccct |
233 |
Q |
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||||||||||||||||| |
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| T |
26176269 |
aactcttttcaatccct |
26176253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 36 - 237
Target Start/End: Complemental strand, 26180361 - 26180159
Alignment:
| Q |
36 |
ctcccaat-tcctaatttggatcatacagaagctttcaagacaggatatttcagtttggatgatcttcacattggaaatgtaatgaccctccaatttccg |
134 |
Q |
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|||||||| |||||| ||||||| |||||||||||||||| ||||| ||||| ||||||||||||| | ||||||||||||||||||| |||||||| |
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| T |
26180361 |
ctcccaatctcctaacttggatcgtacagaagctttcaaggtaggatttttcaatttggatgatctttatgttggaaatgtaatgacccttcaatttccc |
26180262 |
T |
|
| Q |
135 |
gtccaagaagtttctccttacctctcnnnnnnngaggccgactccattcctttctcgatgtcacaactcccaagtattcttcaactcttttcaatccctg |
234 |
Q |
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||||||| |||||||||| ||||| ||||| |||||||||||| | | ||||||||||| |||||| ||||||||||||| |||||||||| |
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| T |
26180261 |
gtccaagtggtttctccttttctctcaaaaaaagaggctgactccattcctcttgcaatgtcacaacttccaagtgttcttcaactcttatcaatccctg |
26180162 |
T |
|
| Q |
235 |
aag |
237 |
Q |
| |
|
||| |
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|
| T |
26180161 |
aag |
26180159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 51 - 237
Target Start/End: Complemental strand, 26162548 - 26162362
Alignment:
| Q |
51 |
ttggatcatacagaagctttcaagacaggatatttcagtttggatgatcttcacattggaaatgtaatgaccctccaatttccggtccaagaagtttctc |
150 |
Q |
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||||||| ||||||||||||||| ||||| ||||| ||||||||||||| | ||||||||||||||||||| |||||||| ||||||| |||| | |
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| T |
26162548 |
ttggatcgcacagaagctttcaaggtaggatttttcaatttggatgatctttatgttggaaatgtaatgacccttcaatttcccatccaagagatttcac |
26162449 |
T |
|
| Q |
151 |
cttacctctcnnnnnnngaggccgactccattcctttctcgatgtcacaactcccaagtattcttcaactcttttcaatccctgaag |
237 |
Q |
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|| |||||| ||||| ||||| |||||| || | |||||||||||||||||| || ||||||| || ||||||||||||| |
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| T |
26162448 |
gtttcctctcaaaaaaagaggctgactcaattcctctcgcaatgtcacaactcccaagtgtttttcaacttttctcaatccctgaag |
26162362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 25648361 - 25648453
Alignment:
| Q |
54 |
gatcatacagaagctttcaagacaggatatttcagtttggatgatcttcacattggaaatgtaatgaccctccaatttccggtccaagaagtt |
146 |
Q |
| |
|
||||| ||||||||||||||| ||| | |||| |||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| |
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| T |
25648361 |
gatcacacagaagctttcaagttaggctttttcggtttggatgatcttcatgttggaaatgtaatggccctccaatttccggtccaaaaagtt |
25648453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 237
Target Start/End: Complemental strand, 25929539 - 25929379
Alignment:
| Q |
77 |
aggatatttcagtttggatgatcttcacattggaaatgtaatgaccctccaatttccggtccaagaagtttctccttacctctcnnnnnnngaggccgac |
176 |
Q |
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||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||| || ||| || ||||| ||| |
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| T |
25929539 |
aggatttttcaatttggatgatcttcatgttggaaatgtaatgaccctccaatttccaatccaagagatttctaatttcctttcgagaaaagaggctgac |
25929440 |
T |
|
| Q |
177 |
tccattcctttctcgatgtcacaactcccaagtattcttcaactcttttcaatccctgaag |
237 |
Q |
| |
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|| |||||| |||| || ||||||||||||||| |||| ||||| |||||||||| |||| |
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| T |
25929439 |
tcaattcctctctcaatttcacaactcccaagtgttctcgaactcctttcaatccccgaag |
25929379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 32189237 - 32189290
Alignment:
| Q |
83 |
tttcagtttggatgatcttcacattggaaatgtaatgaccctccaatttccggt |
136 |
Q |
| |
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||||| |||| ||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
32189237 |
tttcaatttgaatgatcttcgtgttggaaatgtaatgaccctccaatttccggt |
32189290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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