View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8248_low_4 (Length: 519)

Name: NF8248_low_4
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8248_low_4
NF8248_low_4
[»] chr2 (11 HSPs)
chr2 (62-503)||(41636146-41636587)
chr2 (2-39)||(8059450-8059487)
chr2 (1-37)||(6403920-6403956)
chr2 (1-37)||(16405615-16405651)
chr2 (1-37)||(41251750-41251786)
chr2 (1-37)||(42440001-42440037)
chr2 (4-37)||(44084722-44084755)
chr2 (1-37)||(771014-771050)
chr2 (1-37)||(8147366-8147402)
chr2 (1-61)||(12756953-12757012)
chr2 (1-33)||(35962734-35962766)
[»] chr4 (15 HSPs)
chr4 (1-37)||(10353000-10353036)
chr4 (1-37)||(20129325-20129361)
chr4 (1-37)||(30216858-30216894)
chr4 (1-33)||(42333892-42333924)
chr4 (1-37)||(43143700-43143736)
chr4 (1-37)||(47500788-47500824)
chr4 (2-37)||(13012203-13012238)
chr4 (1-35)||(44156668-44156702)
chr4 (1-37)||(3293012-3293048)
chr4 (1-37)||(6690351-6690387)
chr4 (1-37)||(26439395-26439431)
chr4 (1-37)||(30077747-30077783)
chr4 (1-37)||(30109971-30110007)
chr4 (1-37)||(34407400-34407436)
chr4 (1-37)||(43355919-43355955)
[»] chr6 (6 HSPs)
chr6 (1-35)||(29743300-29743334)
chr6 (1-37)||(398632-398668)
chr6 (3-37)||(24697935-24697969)
chr6 (5-38)||(3050093-3050126)
chr6 (1-37)||(18339121-18339157)
chr6 (1-37)||(34948874-34948910)
[»] chr5 (10 HSPs)
chr5 (1-39)||(10033940-10033978)
chr5 (1-37)||(26283434-26283470)
chr5 (1-35)||(31501832-31501866)
chr5 (1-34)||(16155015-16155048)
chr5 (1-37)||(12278976-12279012)
chr5 (1-37)||(13817992-13818028)
chr5 (1-37)||(17332667-17332703)
chr5 (1-37)||(33430336-33430372)
chr5 (1-37)||(37254656-37254692)
chr5 (1-37)||(39434711-39434747)
[»] chr1 (3 HSPs)
chr1 (1-39)||(42311057-42311095)
chr1 (1-37)||(26144270-26144306)
chr1 (1-37)||(35907567-35907603)
[»] scaffold2142 (1 HSPs)
scaffold2142 (1-37)||(537-573)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-37)||(480573-480609)
[»] chr8 (6 HSPs)
chr8 (1-37)||(4404023-4404059)
chr8 (1-37)||(16788141-16788177)
chr8 (1-37)||(34136941-34136977)
chr8 (1-37)||(39914530-39914566)
chr8 (2-37)||(36408566-36408601)
chr8 (1-37)||(3648910-3648946)
[»] chr7 (8 HSPs)
chr7 (1-37)||(3114212-3114248)
chr7 (1-37)||(5555502-5555538)
chr7 (1-37)||(14777223-14777259)
chr7 (1-37)||(34389172-34389208)
chr7 (4-37)||(8394140-8394173)
chr7 (4-37)||(36630831-36630864)
chr7 (1-37)||(8867847-8867883)
chr7 (1-37)||(35090183-35090219)
[»] chr3 (8 HSPs)
chr3 (1-37)||(19565617-19565653)
chr3 (4-37)||(27935193-27935226)
chr3 (1-37)||(11018328-11018364)
chr3 (1-33)||(22968560-22968592)
chr3 (1-37)||(39771805-39771841)
chr3 (1-37)||(40081855-40081891)
chr3 (1-37)||(45182996-45183032)
chr3 (1-37)||(45335890-45335926)
[»] scaffold0069 (1 HSPs)
scaffold0069 (1-39)||(17855-17893)
[»] scaffold0502 (1 HSPs)
scaffold0502 (1-37)||(5245-5281)
[»] scaffold0154 (1 HSPs)
scaffold0154 (1-37)||(31495-31531)


Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 62 - 503
Target Start/End: Original strand, 41636146 - 41636587
Alignment:
Q  62 tgtttatccacataataattcacttgacattccaagctccaaaactta-ggcctcgttttcaagcaacttaagtnnnnnnnnnnnnnnnncacacnnnnn 160  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||                |||||         
T  41636146 tgtttatccacataataattcacttgacattccaagctgcaaaacttaaggcctcgttttcaagcaacttaagtaaaaaagaaa------cacacttttt 41636239  T
Q  161 nnctctccttggatgaggttctatcaaatgattccctagcgatgcattgttttccttctcaagctccgataaaacccaaccctaaatcattatcaaaagt 260  Q
      |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41636240 ttctcttcttggatgaggttctatcaaatgattccctagcgatgcattgttttccttctcaagctccgataaaacccaaccctaaatcgttatcaaaagt 41636339  T
Q  261 gatgttgttacgttttttaaaagttttctaagatgcaagaaacaagagccgtgttcatcgaatcattcattcactctatattgaaagcaatataactata 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41636340 gatgttgttacgttttttaaaagttttctaagatgcaagaaacaagacacgtgttcatcgaatcattcattcactctatattgaaagcaatataactata 41636439  T
Q  361 cgttagtggaagtgttgaacaaacaacacaacacgtgaacaatttcagtttcactttttcagtttgaaagtaacgcagtctattcataaaaacacaggtc 460  Q
    |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||    
T  41636440 cgtttgttgaagtgttgaacaaacaacacaacacgtgaacaatttcagtttcacttttttagtttgaaagtaacgcagtctattcataaaaacactgatc 41636539  T
Q  461 --tga---ctctatgtcaatgtgtacggtgtaggaccaaccaaattta 503  Q
      |||   ||||||||||| ||||||||||||||||||||||||||||    
T  41636540 tttgactcctctatgtcaaagtgtacggtgtaggaccaaccaaattta 41636587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 8059450 - 8059487
Alignment:
Q  2 tctaatgtgcaaaaattatcgattgagcccgggcgatc 39  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  8059450 tctaatgtgcaaaaattatcgattgagcctgggcgatc 8059487  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6403920 - 6403956
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  6403920 gtctaatgtgcaaaaattatcgatcgagcccgggcga 6403956  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16405651 - 16405615
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||| ||||||||||||||||||||||||||||||    
T  16405651 gtctaacgtgcaaaaattatcgattgagcccgggcga 16405615  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 41251750 - 41251786
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  41251750 gtctaatgtgcaaaaattatcgatcgagcccgggcga 41251786  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42440037 - 42440001
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  42440037 gtctaatgtgcaaaaattatcgatcgagcccgggcga 42440001  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 44084722 - 44084755
Alignment:
Q  4 taatgtgcaaaaattatcgattgagcccgggcga 37  Q
    ||||||||||||||||||||| ||||||||||||    
T  44084722 taatgtgcaaaaattatcgatcgagcccgggcga 44084755  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 771050 - 771014
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  771050 gtctaatgtgcaaaagttatcgatcgagcccgggcga 771014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8147402 - 8147366
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  8147402 gtctaatgtgcaaagattatcgatcgagcccgggcga 8147366  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 12756953 - 12757012
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcgatcccgggcggtgaaaccgcccctg 61  Q
    |||||||| ||||||||||||||| || |||||| |   ||||||||||||||||||||||    
T  12756953 gtctaatgcgcaaaaattatcgatcgaacccggg-gtcgccgggcggtgaaaccgcccctg 12757012  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 35962766 - 35962734
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgg 33  Q
    |||||||||||||||||||||||| ||||||||    
T  35962766 gtctaatgtgcaaaaattatcgatcgagcccgg 35962734  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10353000 - 10353036
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  10353000 gtctaatgtgcaaaaattatcgattgagcccgggcga 10353036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 20129361 - 20129325
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  20129361 gtctaatgtgcaaaaattatcgatcgagcccgggcga 20129325  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30216858 - 30216894
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  30216858 gtctaatgtgcaaaaattatcgatcgagcccgggcga 30216894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 42333892 - 42333924
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgg 33  Q
    |||||||||||||||||||||||||||||||||    
T  42333892 gtctaatgtgcaaaaattatcgattgagcccgg 42333924  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43143700 - 43143736
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  43143700 gtctaatgtgcaaaaattatcgatcgagcccgggcga 43143736  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 47500824 - 47500788
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  47500824 gtctaatgtgcaaaaattatcgatcgagcccgggcga 47500788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 13012238 - 13012203
Alignment:
Q  2 tctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    ||||||||||||||||||||||| ||||||||||||    
T  13012238 tctaatgtgcaaaaattatcgatcgagcccgggcga 13012203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 44156702 - 44156668
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggc 35  Q
    |||||||||||||||||||||| ||||||||||||    
T  44156702 gtctaatgtgcaaaaattatcggttgagcccgggc 44156668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3293012 - 3293048
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  3293012 gtctaatgggcaaaaattatcgatcgagcccgggcga 3293048  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6690351 - 6690387
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  6690351 gtctaatgcgcaaaaattatcgatcgagcccgggcga 6690387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26439395 - 26439431
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||  ||||||||||||    
T  26439395 gtctaatgtgcaaaaattatcgaccgagcccgggcga 26439431  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30077747 - 30077783
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  30077747 gtctaatgtgcaaaatttatcgattgagcctgggcga 30077783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30110007 - 30109971
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  30110007 gtctaatgtgcaaaaattatcgatcgagtccgggcga 30109971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34407400 - 34407436
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||  ||||||||||||    
T  34407400 gtctaatgtgcaaaaattatcgaccgagcccgggcga 34407436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43355955 - 43355919
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||  ||||||||||||    
T  43355955 gtctaatgtgcaaaaattatcgaccgagcccgggcga 43355919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 29743334 - 29743300
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  29743334 gtctaatgtgcaaaaattatcgattgagcccgggc 29743300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 398668 - 398632
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  398668 gtctaatgtgcaaaaattatcgatcgagcccgggcga 398632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 24697935 - 24697969
Alignment:
Q  3 ctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||| ||||||||||||||||||||||||||    
T  24697935 ctaatgtgaaaaaattatcgattgagcccgggcga 24697969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 3050126 - 3050093
Alignment:
Q  5 aatgtgcaaaaattatcgattgagcccgggcgat 38  Q
    |||||||||||||||| |||||||||||||||||    
T  3050126 aatgtgcaaaaattattgattgagcccgggcgat 3050093  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18339157 - 18339121
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  18339157 gtctaatgtgcaaaaattattgatcgagcccgggcga 18339121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34948874 - 34948910
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  34948874 gtctaatgtgcaaaaattatcgatcgagcctgggcga 34948910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 10033978 - 10033940
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcgatc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  10033978 gtctaatgtgcaaaaattatcgatcgagcccgggcgatc 10033940  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26283434 - 26283470
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  26283434 gtctaatgtgcaaaaattatcgatcgagcccgggcga 26283470  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 31501832 - 31501866
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggc 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  31501832 gtctaatgtgcaaaaattatcgatcgagcccgggc 31501866  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 16155048 - 16155015
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccggg 34  Q
    |||||||||||||||||||||||| |||||||||    
T  16155048 gtctaatgtgcaaaaattatcgatcgagcccggg 16155015  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12278976 - 12279012
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  12278976 gtctaatgtgcaaaaattatcgatcgagtccgggcga 12279012  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 13818028 - 13817992
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  13818028 gtctaatgtgcaaaaattatcgatcgagcccgagcga 13817992  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17332667 - 17332703
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  17332667 gtctaatatgcaaaaattatcgatcgagcccgggcga 17332703  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33430372 - 33430336
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  33430372 gtctaatgcgcaaaaattatcgatcgagcccgggcga 33430336  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37254692 - 37254656
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  37254692 gtctaatgtgcaaaaattatcgatcgagcctgggcga 37254656  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39434747 - 39434711
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  39434747 gtctaatgtgaaaaaattatcgatcgagcccgggcga 39434711  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 42311057 - 42311095
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcgatc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  42311057 gtctaatgtgcaaaaattatcgatcgagcccgggcgatc 42311095  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26144306 - 26144270
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  26144306 gtctaatgtgcaaaaattatcgatcgagcccgggcga 26144270  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35907603 - 35907567
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    ||||||||||||||||||||||||  |||||||||||    
T  35907603 gtctaatgtgcaaaaattatcgatcaagcccgggcga 35907567  T

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Target: scaffold2142 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 573 - 537
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  573 gtctaatgtgcaaaaattatcgatcgagcccgggcga 537  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 480573 - 480609
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  480573 gtctaatgtgcaaaaattatcgatcgagcccgggcga 480609  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4404059 - 4404023
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  4404059 gtctaatgtgcaaaaattatcgatcgagcccgggcga 4404023  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 16788141 - 16788177
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  16788141 gtctaatgtgcaaaaattatcgatcgagcccgggcga 16788177  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34136941 - 34136977
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  34136941 gtctaatgtgcaaaaattatcgatcgagcccgggcga 34136977  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39914566 - 39914530
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  39914566 gtctaatgtgcaaaaattatcgatcgagcccgggcga 39914530  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 36408601 - 36408566
Alignment:
Q  2 tctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    ||||||||||||||||||||||| ||||||||||||    
T  36408601 tctaatgtgcaaaaattatcgatcgagcccgggcga 36408566  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3648910 - 3648946
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  3648910 gtctaatgtgaaaaaattatcgatcgagcccgggcga 3648946  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3114212 - 3114248
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  3114212 gtctaatgtgcaaaaattatcgatcgagcccgggcga 3114248  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5555538 - 5555502
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  5555538 gtctaatgtgcaaaaattatcgatcgagcccgggcga 5555502  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 14777223 - 14777259
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  14777223 gtctaatgtgcaaaaattatcgatcgagcccgggcga 14777259  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34389172 - 34389208
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  34389172 gtctaatgtgcaaaaattatcgatcgagcccgggcga 34389208  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 8394173 - 8394140
Alignment:
Q  4 taatgtgcaaaaattatcgattgagcccgggcga 37  Q
    ||||||||||||||||||||| ||||||||||||    
T  8394173 taatgtgcaaaaattatcgatcgagcccgggcga 8394140  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 36630864 - 36630831
Alignment:
Q  4 taatgtgcaaaaattatcgattgagcccgggcga 37  Q
    ||||||||||||||||||||| ||||||||||||    
T  36630864 taatgtgcaaaaattatcgatcgagcccgggcga 36630831  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8867847 - 8867883
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  8867847 gtctaatatgcaaaaattatcgatcgagcccgggcga 8867883  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35090219 - 35090183
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  35090219 gtctaatgtgcaaaaattattgatcgagcccgggcga 35090183  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19565617 - 19565653
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    ||||||||||||||||||||||||||| |||||||||    
T  19565617 gtctaatgtgcaaaaattatcgattgaacccgggcga 19565653  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 27935226 - 27935193
Alignment:
Q  4 taatgtgcaaaaattatcgattgagcccgggcga 37  Q
    ||||||||||||||||||||| ||||||||||||    
T  27935226 taatgtgcaaaaattatcgatcgagcccgggcga 27935193  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11018328 - 11018364
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  11018328 gtctaatgtgcaaaaattatcgatcgagcctgggcga 11018364  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 22968560 - 22968592
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgg 33  Q
    |||||||||||||||||||||||| ||||||||    
T  22968560 gtctaatgtgcaaaaattatcgatcgagcccgg 22968592  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39771841 - 39771805
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||||||  ||||||||||||    
T  39771841 gtctaatgtgcaaaaattatcgaccgagcccgggcga 39771805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40081855 - 40081891
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  40081855 gtctaatgttcaaaaattatcgatcgagcccgggcga 40081891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45183032 - 45182996
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  45183032 gtctaatgcgcaaaaattatcgatcgagcccgggcga 45182996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45335926 - 45335890
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  45335926 gtctaatgtgtaaaaattatcgattgagtccgggcga 45335890  T

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Target: scaffold0069 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 17893 - 17855
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcgatc 39  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  17893 gtctaatgtgcaaaaattatcgatcgagcccggacgatc 17855  T

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Target: scaffold0502 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5281 - 5245
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  5281 gtctaatgtgcaaaaattattgatcgagcccgggcga 5245  T

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Target: scaffold0154 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 31531 - 31495
Alignment:
Q  1 gtctaatgtgcaaaaattatcgattgagcccgggcga 37  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  31531 gtctagtgtgcaaaaattatcgatcgagcccgggcga 31495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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