View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8248_low_41 (Length: 227)

Name: NF8248_low_41
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8248_low_41
NF8248_low_41
[»] chr1 (12 HSPs)
chr1 (1-217)||(47873701-47873918)
chr1 (1-185)||(49540555-49540740)
chr1 (35-185)||(40140804-40140955)
chr1 (35-185)||(40027014-40027165)
chr1 (1-185)||(48179214-48179408)
chr1 (42-182)||(41185859-41186009)
chr1 (88-185)||(2417935-2418032)
chr1 (104-183)||(49287236-49287315)
chr1 (113-184)||(45196622-45196693)
chr1 (33-185)||(49440452-49440614)
chr1 (1-98)||(45196717-45196815)
chr1 (33-92)||(48529044-48529104)
[»] chr3 (9 HSPs)
chr3 (4-185)||(14964156-14964347)
chr3 (113-187)||(485867-485941)
chr3 (113-187)||(540690-540764)
chr3 (113-187)||(552886-552960)
chr3 (113-187)||(572718-572792)
chr3 (75-180)||(38866610-38866715)
chr3 (144-184)||(39193333-39193373)
chr3 (114-184)||(529924-529994)
chr3 (113-182)||(30858830-30858899)
[»] chr5 (2 HSPs)
chr5 (32-181)||(31266648-31266807)
chr5 (116-187)||(43156467-43156538)
[»] chr7 (2 HSPs)
chr7 (41-181)||(32347528-32347678)
chr7 (135-183)||(25837209-25837257)
[»] chr6 (3 HSPs)
chr6 (144-184)||(3048163-3048203)
chr6 (144-181)||(34605775-34605812)
chr6 (144-181)||(34727052-34727089)
[»] chr4 (2 HSPs)
chr4 (37-184)||(55773829-55773977)
chr4 (39-184)||(55838040-55838186)
[»] scaffold0128 (1 HSPs)
scaffold0128 (117-173)||(15868-15924)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 47873918 - 47873701
Alignment:
Q  1 cctgaatacactctacatagtgtagatgaagaactgatgacatacacagagttgctctcatatcc-cacctgttcgggttgctcaatgcataacagtttg 99  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47873918 cctgaatacactctacatagtgtagatgaagaactgatggcatacacagagttgctctcatatcctcacctgttcgggttgctcaatgcataacagtttg 47873819  T
Q  100 tgtttgaaacattaaataatgcaatgtcgcccagtgtttctagtttgacataattcatggttgagaagtctatcttgtacacattcaaccttgaatcaac 199  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47873818 tgttcgaaacattaaataatgcaatgtcgcccagtgtttctagtttgacataattcatggttgagaagtctatcttgtacacattcaaccttgaatcaac 47873719  T
Q  200 cagtaaaagttgttcatc 217  Q
    || |||||||||||||||    
T  47873718 cactaaaagttgttcatc 47873701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 49540555 - 49540740
Alignment:
Q  1 cctgaatacactctacatagtgtagatgaagaactgatgacatacacagagttgctctcatatccc-acctgttcgggttgctcaatgcataacagtttg 99  Q
    ||||||||||| ||||||| |||||||  |  || ||||||||||| |||||||||||| |||||| | ||  ||||||||||||||||||||||  ||     
T  49540555 cctgaatacacactacatattgtagatccaagacggatgacatacatagagttgctctcgtatccccatctactcgggttgctcaatgcataacaacttc 49540654  T
Q  100 tgtttgaaacattaaataatgcaatgtcgcccagtgtttctagtttgacataattcatggttgagaagtctatcttgtacacattc 185  Q
    | || |||| || ||||||||||||||||||||  |||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  49540655 tattcgaaatataaaataatgcaatgtcgcccaaagtttcttgtttgacataatccatggttgagaagtctatcttgtacacattc 49540740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 35 - 185
Target Start/End: Complemental strand, 40140955 - 40140804
Alignment:
Q  35 tgatgacatacacagagttgctctcatatccc-acctgttcgggttgctcaatgcataacagtttgtgtttgaaacattaaataatgcaatgtcgcccag 133  Q
    ||||||||| |||||||||||| ||||||||| |||| || |||||||| ||||||||| ||||| |||| | | ||| |||||||| |||||||||||     
T  40140955 tgatgacatgcacagagttgctttcatatccccacctatttgggttgcttaatgcataatagtttctgttagcagcatgaaataatgaaatgtcgcccaa 40140856  T
Q  134 tgtttctagtttgacataattcatggttgagaagtctatcttgtacacattc 185  Q
      |||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  40140855 actttccagtttgacataattcatggttgagaagtctatcttgtatacattc 40140804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 35 - 185
Target Start/End: Complemental strand, 40027165 - 40027014
Alignment:
Q  35 tgatgacatacacagagttgctctcatatccc-acctgttcgggttgctcaatgcataacagtttgtgtttgaaacattaaataatgcaatgtcgcccag 133  Q
    ||||||||||||||||||| |||||||||||| |||| || |||||||||||||| ||| ||||| | ||   | ||| |||||||||||||| |||||     
T  40027165 tgatgacatacacagagttactctcatatccccacctattagggttgctcaatgcgtaaaagtttctcttcccagcataaaataatgcaatgttgcccaa 40027066  T
Q  134 tgtttctagtttgacataattcatggttgagaagtctatcttgtacacattc 185  Q
     | ||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  40027065 agcttcgagtttgacataattcatggttgagaagtctatcttgtatacattc 40027014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 48179408 - 48179214
Alignment:
Q  1 cctgaatacactctacatagtgtagatgaagaactgatgacatacacagagttgctctcatatccc-acctgttcgggttgctcaatgcataacagtttg 99  Q
    ||||||||||| || |||| || |||| ||  || |||||||||||||||||| |||||||||||| ||  ||| |||||| |||||||||||||||||     
T  48179408 cctgaatacacactgcatactgcagataaaataccgatgacatacacagagtttctctcatatccccacaagtttgggttgttcaatgcataacagtttc 48179309  T
Q  100 tgt---------ttgaaacattaaataatgcaatgtcgcccagtgtttctagtttgacataattcatggttgagaagtctatcttgtacacattc 185  Q
    | |         ||||||||| |||||||||||||| |||||  |||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  48179308 tctcgaaaccatttgaaacataaaataatgcaatgttgcccaaagtttctagtttgacataattcatggttgagaaatctatcttgtatacattc 48179214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 42 - 182
Target Start/End: Complemental strand, 41186009 - 41185859
Alignment:
Q  42 atacacagagttgctctcatatccc-acctgttcgggttgctcaatgcataacagtttgtgtttgaaacatt---------aaataatgcaatgtcgccc 131  Q
    ||||||||||||||||||||||||| |  ||||||||||||||||||||||||| ||| | ||  || || |         |||||||||||||| ||||    
T  41186009 atacacagagttgctctcatatccccatttgttcgggttgctcaatgcataacaatttttcttcaaaccaatcgaaatagaaaataatgcaatgttgccc 41185910  T
Q  132 agtgtttctagtttgacataattcatggttgagaagtctatcttgtacaca 182  Q
    |  |||| |||| ||||||||||||||||||||||||||||||||||||||    
T  41185909 aaagtttttagtctgacataattcatggttgagaagtctatcttgtacaca 41185859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 2417935 - 2418032
Alignment:
Q  88 cataacagtttgtgtttgaaacattaaataatgcaatgtcgcccagtgtttctagtttgacataattcatggttgagaagtctatcttgtacacattc 185  Q
    ||||||||||| ||||   | ||| |||||||| ||||| |||||  ||||| ||||||||||||||||||||||||||| |||||||||| ||||||    
T  2417935 cataacagtttctgttatcagcataaaataatgaaatgttgcccaaagtttccagtttgacataattcatggttgagaagcctatcttgtatacattc 2418032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 49287315 - 49287236
Alignment:
Q  104 tgaaacattaaataatgcaatgtcgcccagtgtttctagtttgacataattcatggttgagaagtctatcttgtacacat 183  Q
    |||| ||| ||||||| |||||||| |||  ||||  ||||| |||||| ||||||||||||||||||||||||||||||    
T  49287315 tgaagcatgaaataatacaatgtcgtccaaagttttcagtttaacataactcatggttgagaagtctatcttgtacacat 49287236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 45196693 - 45196622
Alignment:
Q  113 aaataatgcaatgtcgcccagtgtttctagtttgacataattcatggttgagaagtctatcttgtacacatt 184  Q
    ||||||||||||||| ||||  ||||  ||| |||| |||||||| ||||||||| ||||||||||||||||    
T  45196693 aaataatgcaatgtcacccaaagttttcagtctgacgtaattcatagttgagaagcctatcttgtacacatt 45196622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 185
Target Start/End: Original strand, 49440452 - 49440614
Alignment:
Q  33 actgatgacatacacagagttgctctcatatccc-acctgttcgggttgctcaatgcataacagtttgtgt---------ttgaaacattaaataatgca 122  Q
    |||||||||||| ||||| || |||||||||||| || ||||||| || ||||||||||||||| || | |         |||| |||  |||||| |||    
T  49440452 actgatgacataaacagaattactctcatatccccacatgttcggatttctcaatgcataacagcttttctccaacatatttgacacacaaaataacgca 49440551  T
Q  123 atgtcgcccagtgtttctagtttgacataattcatggttgagaagtctatcttgtacacattc 185  Q
    ||||| ||||  ||||| | || ||||||| |||| ||||||||||||||||||||| |||||    
T  49440552 atgtcacccaaagtttccaattcgacataagtcatagttgagaagtctatcttgtacgcattc 49440614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 45196815 - 45196717
Alignment:
Q  1 cctgaatacactctacatagtgtagatgaagaactgatgacatacacagagttgctctcatatccc-acctgttcgggttgctcaatgcataacagttt 98  Q
    ||||||||| | ||||||| ||||||| ||  | ||||| |||||| ||| |||| |||||||||| | || ||||| ||||||||||||||||| |||    
T  45196815 cctgaatacgcactacatattgtagataaaagattgatgtcatacatagaattgcactcatatccccatctattcggattgctcaatgcataacaattt 45196717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 48529104 - 48529044
Alignment:
Q  33 actgatgacatacacagagttgctctcatatc-ccacctgttcgggttgctcaatgcataa 92  Q
    |||||||||||||||| | ||||||||||||| | |||| || ||||||||||| ||||||    
T  48529104 actgatgacatacacacaattgctctcatatctcaacctatttgggttgctcaacgcataa 48529044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 14964347 - 14964156
Alignment:
Q  4 gaatacactctacatagtgtagatgaagaactgatgacatacacagagttgctctcatat-cccacctgttcgggttgctcaatgcataacagtttgtgt 102  Q
    |||||||| ||||||| ||||||| ||  |||||||||||||||||||||||| |||||| ||||| |||| |||||||||||||||||||| ||| | |    
T  14964347 gaatacacactacatattgtagataaaagactgatgacatacacagagttgctttcatatccccacttgtttgggttgctcaatgcataacaatttctct 14964248  T
Q  103 ttgaaacatt---------aaataatgcaatgtcgcccagtgtttctagtttgacataattcatggttgagaagtctatcttgtacacattc 185  Q
    |  || ||||         ||||||||||||||||||||  ||||| | ||| ||||||||||||||||||||||| |||||||||||||||    
T  14964247 tcaaaccattcgaaccacaaaataatgcaatgtcgcccaaagtttccaatttcacataattcatggttgagaagtcgatcttgtacacattc 14964156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 485867 - 485941
Alignment:
Q  113 aaataatgcaatgtcgcccagtgtttctagtttgacataattcatggttgagaagtctatcttgtacacattcaa 187  Q
    |||||| |||||||||||||  ||||| || ||||||||||||||||||||||||||||||||||| ||||||||    
T  485867 aaataaggcaatgtcgcccaaagtttccagcttgacataattcatggttgagaagtctatcttgtaaacattcaa 485941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 540690 - 540764
Alignment:
Q  113 aaataatgcaatgtcgcccagtgtttctagtttgacataattcatggttgagaagtctatcttgtacacattcaa 187  Q
    ||||||||||||||| ||||  ||||| || |||| |||||||||||||||||||||||||||||| ||||||||    
T  540690 aaataatgcaatgtcacccaaagtttccagcttgatataattcatggttgagaagtctatcttgtatacattcaa 540764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 552886 - 552960
Alignment:
Q  113 aaataatgcaatgtcgcccagtgtttctagtttgacataattcatggttgagaagtctatcttgtacacattcaa 187  Q
    ||||||||||||||| ||||  ||||| || |||| |||||||||||||||||||||||||||||| ||||||||    
T  552886 aaataatgcaatgtcacccaaagtttccagcttgatataattcatggttgagaagtctatcttgtatacattcaa 552960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 572718 - 572792
Alignment:
Q  113 aaataatgcaatgtcgcccagtgtttctagtttgacataattcatggttgagaagtctatcttgtacacattcaa 187  Q
    ||||||||||||||| ||||  ||||| || |||| |||||||||||||||||||||||||||||| ||||||||    
T  572718 aaataatgcaatgtcacccaaagtttccagcttgatataattcatggttgagaagtctatcttgtatacattcaa 572792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 180
Target Start/End: Original strand, 38866610 - 38866715
Alignment:
Q  75 gggttgctcaatgcataacagtttgtgtttgaaacattaaataatgcaatgtcgcccagtgtttctagtttgacataattcatggttgagaagtctatct 174  Q
    |||||| ||||||||||  | ||| | |||| | ||| ||||||||||||||| ||||  | ||| |  ||||||||| |||||||||||||||||||||    
T  38866610 gggttgttcaatgcatagtactttttctttggagcatgaaataatgcaatgtcacccaaagattccaacttgacataagtcatggttgagaagtctatct 38866709  T
Q  175 tgtaca 180  Q
    ||||||    
T  38866710 tgtaca 38866715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 39193333 - 39193373
Alignment:
Q  144 ttgacataattcatggttgagaagtctatcttgtacacatt 184  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  39193333 ttgacataattcatggttgagaaatctatcttgtacacatt 39193373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 529924 - 529994
Alignment:
Q  114 aataatgcaatgtcgcccagtgtttctagtttgacataattcatggttgagaagtctatcttgtacacatt 184  Q
    |||||||||||||| ||||  ||||| |  |||||| ||||| || |||||||||| ||||||||||||||    
T  529924 aataatgcaatgtcacccaaagtttccaagttgacaaaattcttgattgagaagtcgatcttgtacacatt 529994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 30858830 - 30858899
Alignment:
Q  113 aaataatgcaatgtcgcccagtgtttctagtttgacataattcatggttgagaagtctatcttgtacaca 182  Q
    ||||||||||||||| ||||  ||||| |  || | ||||| ||||||||| ||||||||||||||||||    
T  30858830 aaataatgcaatgtcacccaaagtttccaacttaatataatccatggttgataagtctatcttgtacaca 30858899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 32 - 181
Target Start/End: Complemental strand, 31266807 - 31266648
Alignment:
Q  32 aactgatgacatacacagagttgctctcatatccc-acctgttcgggttgctcaatgcataacagtt--------tgtg-tttgaaacattaaataatgc 121  Q
    ||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| ||        | || |||  |  || |||||||||    
T  31266807 aactgctgacatacatagagttgctctcatatccccacctgttggggttgctcaatgcataacaatttcccataatttgatttccagtataaaataatgc 31266708  T
Q  122 aatgtcgcccagtgtttctagtttgacataattcatggttgagaagtctatcttgtacac 181  Q
    |||||||||||  || |  |||| ||||||||||||||||| ||||||||||||||||||    
T  31266707 aatgtcgcccaaagtgttcagttcgacataattcatggttgtgaagtctatcttgtacac 31266648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 43156467 - 43156538
Alignment:
Q  116 taatgcaatgtcgcccagtgtttctagtttgacataattcatggttgagaagtctatcttgtacacattcaa 187  Q
    ||||||||||| ||| |  ||||  |||||||||||| |||||||||||||||||||||| ||||| |||||    
T  43156467 taatgcaatgttgcctaaagttttcagtttgacataactcatggttgagaagtctatcttatacactttcaa 43156538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 181
Target Start/End: Original strand, 32347528 - 32347678
Alignment:
Q  41 catacacagagttgctctcatatccc-acctgttcgggttgctcaatgcataacagtttgtg---------tttgaaacattaaataatgcaatgtcgcc 130  Q
    |||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| |          || | | ||| || |||||||| ||||||    
T  32347528 cataaacagagttgctctcatatccccacctgtttgggttgctcaatgcataacaatttctcggcctacaattcgcagcataaagtaatgcaacgtcgcc 32347627  T
Q  131 cagtgtttctagtttgacataattcatggttgagaagtctatcttgtacac 181  Q
     |  ||||  | ||||||||||||||||||||||||||||||||| |||||    
T  32347628 taaagttttcaatttgacataattcatggttgagaagtctatcttatacac 32347678  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 25837209 - 25837257
Alignment:
Q  135 gtttctagtttgacataattcatggttgagaagtctatcttgtacacat 183  Q
    |||||||| ||  ||||||||||||||||||||||||| ||||||||||    
T  25837209 gtttctagcttctcataattcatggttgagaagtctattttgtacacat 25837257  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 3048203 - 3048163
Alignment:
Q  144 ttgacataattcatggttgagaagtctatcttgtacacatt 184  Q
    |||||||||| |||||||||||| |||||||||||||||||    
T  3048203 ttgacataatccatggttgagaaatctatcttgtacacatt 3048163  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 34605812 - 34605775
Alignment:
Q  144 ttgacataattcatggttgagaagtctatcttgtacac 181  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  34605812 ttgacataatccatggtagagaagtctatcttgtacac 34605775  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 34727089 - 34727052
Alignment:
Q  144 ttgacataattcatggttgagaagtctatcttgtacac 181  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  34727089 ttgacataatccatggtagagaagtctatcttgtacac 34727052  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 184
Target Start/End: Complemental strand, 55773977 - 55773829
Alignment:
Q  37 atgacatacacagagttgctctcat-atcccacctgttcgggttgctcaatgcataacagtttgtgtttgaaacattaaataatgcaatgtcgcccagtg 135  Q
    |||||||||||||||||||| |||| | |||| ||||||||||||||||| |||||  |||||      | | |||  |||||||||||||| ||||  |    
T  55773977 atgacatacacagagttgctttcataaccccatctgttcgggttgctcaaggcatagtagtttccaccaggagcatataataatgcaatgtctcccaaag 55773878  T
Q  136 tttctagtttgacataattcatggttgagaagtctatcttgtacacatt 184  Q
    |||  |  |||||||| ||||||||||| ||||| ||||| ||||||||    
T  55773877 ttttcaacttgacatacttcatggttgaaaagtcaatcttatacacatt 55773829  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 184
Target Start/End: Complemental strand, 55838186 - 55838040
Alignment:
Q  39 gacatacacagagttgctctcatatccc-acctgttcgggttgctcaatgcataacagtttgtgtttgaaacattaaataatgcaatgtcgcccagtgtt 137  Q
    |||||||||||||||||| ||||| ||| | ||||||||||||||||| |||||  |||||      | | |||  |||||||||||||| ||||  |||    
T  55838186 gacatacacagagttgctttcataaccccatctgttcgggttgctcaaggcatagtagtttccaccaggagcatataataatgcaatgtctcccaaagtt 55838087  T
Q  138 tctagtttgacataattcatggttgagaagtctatcttgtacacatt 184  Q
    |  |  |||||||| ||||||||||| ||||| ||||| ||||||||    
T  55838086 ttcaacttgacatacttcatggttgaaaagtcaatcttatacacatt 55838040  T

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Target: scaffold0128 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 15868 - 15924
Alignment:
Q  117 aatgcaatgtcgcccagtgtttctagtttgacataattcatggttgagaagtctatc 173  Q
    ||||||| ||| ||||  |||||||| ||||||||| |||| |||||||||||||||    
T  15868 aatgcaaggtcacccaaagtttctagcttgacataactcatcgttgagaagtctatc 15924  T

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