View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8248_low_42 (Length: 210)

Name: NF8248_low_42
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8248_low_42
NF8248_low_42
[»] chr2 (4 HSPs)
chr2 (51-195)||(809748-809886)
chr2 (51-194)||(39155718-39155855)
chr2 (51-190)||(15001780-15001914)
chr2 (63-100)||(20024531-20024568)
[»] scaffold0713 (2 HSPs)
scaffold0713 (51-195)||(4086-4222)
scaffold0713 (120-195)||(11-86)
[»] chr1 (3 HSPs)
chr1 (51-195)||(17654441-17654577)
chr1 (51-194)||(47051604-47051740)
chr1 (67-194)||(16099746-16099868)
[»] chr4 (4 HSPs)
chr4 (51-195)||(18695235-18695375)
chr4 (120-195)||(4764559-4764634)
chr4 (51-194)||(27562217-27562354)
chr4 (128-194)||(54352885-54352952)
[»] chr3 (2 HSPs)
chr3 (51-195)||(6912402-6912542)
chr3 (58-194)||(19433979-19434108)
[»] scaffold0406 (1 HSPs)
scaffold0406 (51-195)||(2633-2772)
[»] chr8 (4 HSPs)
chr8 (51-195)||(4707557-4707693)
chr8 (51-100)||(15998651-15998700)
chr8 (122-194)||(26341503-26341575)
chr8 (65-100)||(15256673-15256708)
[»] chr6 (5 HSPs)
chr6 (51-192)||(9821641-9821774)
chr6 (120-195)||(33062072-33062147)
chr6 (120-190)||(25479338-25479408)
chr6 (70-98)||(25479422-25479450)
chr6 (58-100)||(28039709-28039748)
[»] scaffold0438 (2 HSPs)
scaffold0438 (123-194)||(8682-8753)
scaffold0438 (122-194)||(11664-11736)
[»] chr5 (2 HSPs)
chr5 (128-194)||(5520500-5520567)
chr5 (120-194)||(15597679-15597754)


Alignment Details
Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 51 - 195
Target Start/End: Complemental strand, 809886 - 809748
Alignment:
Q  51 attttccctattaatattattgatattttgataattttctatgttaaagttaaagtgtttatnnnnnnntggggaacacaccctttgaactttttcttat 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||       |||||||||||||||||||||||||||||||    
T  809886 attttccctattaatattattgatattttgataattttctatgttaaagt------gtttataaaaaaatggggaacacaccctttgaactttttcttat 809793  T
Q  151 caatgatgctcatgtttaaagtcatcgatattattatggtctctg 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  809792 caatgatgctcatgtttaaagtcatcgatattattatggtctctg 809748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 51 - 194
Target Start/End: Complemental strand, 39155855 - 39155718
Alignment:
Q  51 attttccctattaatattattgatattttgataattttctatgttaaagttaaagtgtttatnnnnnnntggggaacacaccctttgaac-tttttctta 149  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||      ||||||       |||||||||| |||||||||| ||||||||     
T  39155855 attttcactattaatattattgatattttgataattttctatgttaaagt------gtttataaaaaa-tggggaacacgccctttgaacatttttcttc 39155763  T
Q  150 tcaatgatgctcatgtttaaagtcatcgatattattatggtctct 194  Q
    ||| |||| || |||||||||||||||||||||||||||||||||    
T  39155762 tcattgatacttatgtttaaagtcatcgatattattatggtctct 39155718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 51 - 190
Target Start/End: Complemental strand, 15001914 - 15001780
Alignment:
Q  51 attttccctattaatattattgatattttgataattttctatgttaaagttaaagtgtttatnnnnnnntggggaacacaccctttgaacttttt-ctta 149  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||      ||||||       ||||||||||||||||||| |||||| |||     
T  15001914 attttcactattaatattattgatattttgataattttctatgttaaagt------gtttataaaaa--tggggaacacaccctttgagcttttttcttc 15001823  T
Q  150 tcaatgatgctcatgttt--aaagtcatcgatattattatggt 190  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  15001822 tcaatgatgctcatgtttttaaagtcatcgatattattatggt 15001780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 20024568 - 20024531
Alignment:
Q  63 aatattattgatattttgataattttctatgttaaagt 100  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  20024568 aatattattgatattttgattattttctttgttaaagt 20024531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 51 - 195
Target Start/End: Original strand, 4086 - 4222
Alignment:
Q  51 attttccctattaatattattgatattttgataattttctatgttaaagttaaagtgtttatnnnnnnntggggaacacaccctttgaactttttcttat 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||      |||||       ||||||||||||||||||||||||||||| |    
T  4086 attttccctattaatattattgatattttgataattttctatgttaaagtt------tttataaaaa--tggggaacacaccctttgaactttttcttct 4177  T
Q  151 caatgatgctcatgtttaaagtcatcgatattattatggtctctg 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4178 caatgatgctcatgtttaaagtcatcgatattattatggtctctg 4222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 11 - 86
Alignment:
Q  120 tggggaacacaccctttgaactttttcttatcaatgatgctcatgtttaaagtcatcgatattattatggtctctg 195  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11 tggggaacacaccctttgaactttttcttctcaatgatgctcatgtttaaagtcatcgatattattatggtctctg 86  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 7e-45; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 51 - 195
Target Start/End: Complemental strand, 17654577 - 17654441
Alignment:
Q  51 attttccctattaatattattgatattttgataattttctatgttaaagttaaagtgtttatnnnnnnntggggaacacaccctttgaactttttcttat 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||      |||||       ||||||||||||||||||||||||||||| |    
T  17654577 attttccctattaatattattgatattttgataattttctatgttaaagtt------tttataaaaa--tggggaacacaccctttgaactttttcttct 17654486  T
Q  151 caatgatgctcatgtttaaagtcatcgatattattatggtctctg 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  17654485 caatgatgctcatgtttaaagtcatcgatattattatggtctctg 17654441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 51 - 194
Target Start/End: Complemental strand, 47051740 - 47051604
Alignment:
Q  51 attttccctattaatattattgatattttgataattttctatgttaaagttaaagtgtttatnnnnnnntggggaacacaccctttgaac-tttttctta 149  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    || |||||       ||||||||||||||||||||| ||||||||     
T  47051740 attttcactattaatattattgatattttgataattttctatgttaaagt----gt-tttataaaa---tggggaacacaccctttgaacatttttcttc 47051649  T
Q  150 tcaatgatgctcatgtttaaagtcatcgatattattatggtctct 194  Q
    ||| |||| || |||||||||||||||||||||||||||||||||    
T  47051648 tcattgatacttatgtttaaagtcatcgatattattatggtctct 47051604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 67 - 194
Target Start/End: Original strand, 16099746 - 16099868
Alignment:
Q  67 ttattgatattttgataattttctatgttaaagttaaagtgtttatnnnnnnntggggaacacaccctttgaac---tttttcttatcaatgatgctcat 163  Q
    ||||||||||||||||||||||||||||||||||      ||||||       |||||||||||||||||||||   |||||||| ||| |||| || ||    
T  16099746 ttattgatattttgataattttctatgttaaagt------gtttataaaaa--tggggaacacaccctttgaacatttttttcttctcattgatacttat 16099837  T
Q  164 gtttaaagtcatcgatattattatggtctct 194  Q
    |||||||||||||||||||||||||||||||    
T  16099838 gtttaaagtcatcgatattattatggtctct 16099868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 51 - 195
Target Start/End: Complemental strand, 18695375 - 18695235
Alignment:
Q  51 attttccctattaatattattgatattttgataattttctatgttaaagttaaagtgtttatnnnnnnntggggaacacaccctttgaactttttcttat 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    || | ||        |||||||||||||||||||||||||||||||    
T  18695375 attttccctattaatattattgatattttgataattttctatgttaaagt----gtttataaaaaaaaatggggaacacaccctttgaactttttcttat 18695280  T
Q  151 caatgatgctcatgtttaaagtcatcgatattattatggtctctg 195  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  18695279 caatgatgctcgtgtttaaagtcatcgatattattatggtctctg 18695235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 4764634 - 4764559
Alignment:
Q  120 tggggaacacaccctttgaactttttcttatcaatgatgctcatgtttaaagtcatcgatattattatggtctctg 195  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4764634 tggggaacacaccctttgaactttttcttctcaatgatgctcatgtttaaagtcatcgatattattatggtctctg 4764559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 51 - 194
Target Start/End: Complemental strand, 27562354 - 27562217
Alignment:
Q  51 attttccctattaatattattgatattttgataattttctatgttaaagttaaagtgtttatnnnnnnntggggaacacaccctttgaac-tttttctta 149  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||      ||||||       |||||||||| |||||||||| ||||||||     
T  27562354 attttcactattaatattattgatattttgataattttctatgttaaagt------gtttataaaaaa-tggggaacacgccctttgaacatttttcttc 27562262  T
Q  150 tcaatgatgctcatgtttaaagtcatcgatattattatggtctct 194  Q
    ||| |||| || |||||||||||||||||||||||||||||||||    
T  27562261 tcattgatacttatgtttaaagtcatcgatattattatggtctct 27562217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 54352952 - 54352885
Alignment:
Q  128 acaccctttgaac-tttttcttatcaatgatgctcatgtttaaagtcatcgatattattatggtctct 194  Q
    ||||||||||||| |||||||| ||| |||| || |||||||||||||||||||||||||||||||||    
T  54352952 acaccctttgaacatttttcttctcattgatacttatgtttaaagtcatcgatattattatggtctct 54352885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 51 - 195
Target Start/End: Complemental strand, 6912542 - 6912402
Alignment:
Q  51 attttccctattaatattattgatattttgataattttctatgttaaagttaaagtgtttatnnnnnnntggggaacacaccctttgaactttttcttat 150  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    || | ||        ||||||||||||||||||||||||||||| |    
T  6912542 attttccctattaatattattgatatttttataattttctatgttaaagt----gtttataaaaaaaaatggggaacacaccctttgaactttttcttct 6912447  T
Q  151 caatgatgctcatgtttaaagtcatcgatattattatggtctctg 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6912446 caatgatgctcatgtttaaagtcatcgatattattatggtctctg 6912402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 58 - 194
Target Start/End: Original strand, 19433979 - 19434108
Alignment:
Q  58 ctattaatattattgatattttgataattttctatgttaaagttaaagtgtttatnnnnnnntggggaacacaccctttgaac-tttttcttatcaatga 156  Q
    ||||||||||||||||||||||||||||||||||| |||||||      ||||||       |||||||||  |||||||||| |||||||| ||| |||    
T  19433979 ctattaatattattgatattttgataattttctatcttaaagt------gtttataaaaa--tggggaacatgccctttgaacatttttcttctcattga 19434070  T
Q  157 tgctcatgtttaaagtcatcgatattattatggtctct 194  Q
    | || |||||||||||||||||||||||||||||||||    
T  19434071 tacttatgtttaaagtcatcgatattattatggtctct 19434108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 51 - 195
Target Start/End: Original strand, 2633 - 2772
Alignment:
Q  51 attttccctattaatattattgatattttgataattttctatgttaaagttaaagtgtttatnnnnnnn-tggggaacacaccctttgaactttttctta 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||        |||||||||||||||||||||||||||||     
T  2633 attttccctattaatattattgatattttgataattttctatgttaaagt------gtttataaaaaaaatggggaacacaccctttgaactttttcttc 2726  T
Q  150 tcaatgatgctcatgtttaaagtcatcgatattattatggtctctg 195  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||    
T  2727 tcaatgatgctcatgtttaaagtcatcgatattattatgttctctg 2772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 4e-40; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 51 - 195
Target Start/End: Complemental strand, 4707693 - 4707557
Alignment:
Q  51 attttccctattaatattattgatattttgataattttctatgttaaagttaaagtgtttatnnnnnnntggggaacacaccctttgaactttttcttat 150  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||      ||||||       ||||||||||||||||||||||||||||| |    
T  4707693 attttccctattaatattattgatactttgataattttctatgttaaagt------gtttataaaaa--tggggaacacaccctttgaactttttcttct 4707602  T
Q  151 caatgatgctcatgtttaaagtcatcgatattattatggtctctg 195  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  4707601 caatgatgctcatgtttaaagtcatcgatgttattatggtctctg 4707557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 15998651 - 15998700
Alignment:
Q  51 attttccctattaatattattgatattttgataattttctatgttaaagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15998651 attttccctattaatattattgatattttgataattttctatgtaaaagt 15998700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 26341575 - 26341503
Alignment:
Q  122 gggaacacaccctttgaactttttcttatcaatgatgctcatgtttaaagtcatcgatattattatggtctct 194  Q
    ||||||||||||||||||| ||||||| ||| ||||  | ||||||||||||||| ||| ||||| |||||||    
T  26341575 gggaacacaccctttgaacattttcttgtcattgatatttatgtttaaagtcatcaatactattacggtctct 26341503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 100
Target Start/End: Original strand, 15256673 - 15256708
Alignment:
Q  65 tattattgatattttgataattttctatgttaaagt 100  Q
    |||||||||||||||||||||||| |||||||||||    
T  15256673 tattattgatattttgataattttatatgttaaagt 15256708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 51 - 192
Target Start/End: Original strand, 9821641 - 9821774
Alignment:
Q  51 attttccctattaatattattgatattttgataattttctatgttaaagttaaagtgtttatnnnnnnntggggaacacaccctttgaactttttcttat 150  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||      ||||||       ||||||||||||||||||||||||||||  |    
T  9821641 attttccctattaatattattgatattttgataattttatatgttaaagt------gtttataaaaa--tggggaacacaccctttgaactttttctcct 9821732  T
Q  151 caatgatgctcatgtttaaagtcatcgatattattatggtct 192  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9821733 caatgatgctcatgtttaaagtcatcgatattattatggtct 9821774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 33062072 - 33062147
Alignment:
Q  120 tggggaacacaccctttgaactttttcttatcaatgatgctcatgtttaaagtcatcgatattattatggtctctg 195  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33062072 tggggaacacaccctttgaactttttcttctcaatgatgctcatgtttaaagtcatcgatattattatggtctctg 33062147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 25479408 - 25479338
Alignment:
Q  120 tggggaacacaccctttgaactttttcttatcaatgatgctcatgtttaaagtcatcgatattattatggt 190  Q
    |||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  25479408 tggggaacacacccattgaactttttcttctcaatgttgctcatgtttaaagtcatcgatattattatggt 25479338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 98
Target Start/End: Complemental strand, 25479450 - 25479422
Alignment:
Q  70 ttgatattttgataattttctatgttaaa 98  Q
    |||||||||||||||||||||||||||||    
T  25479450 ttgatattttgataattttctatgttaaa 25479422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 28039709 - 28039748
Alignment:
Q  58 ctattaatattattgatattttgataattttctatgttaaagt 100  Q
    |||||||||||||||||||||||   |||||||||||||||||    
T  28039709 ctattaatattattgatattttg---attttctatgttaaagt 28039748  T

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Target: scaffold0438 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 8753 - 8682
Alignment:
Q  123 ggaacacaccctttgaactttttcttatcaatgatgctcatgtttaaagtcatcgatattattatggtctct 194  Q
    |||||||||||||||||| ||||||| ||| ||||  | ||||||||||||||| ||| |||||||||||||    
T  8753 ggaacacaccctttgaacattttcttgtcattgatatttatgtttaaagtcatcaatactattatggtctct 8682  T

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Target: scaffold0438; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 11736 - 11664
Alignment:
Q  122 gggaacacaccctttgaactttttcttatcaatgatgctcatgtttaaagtcatcgatattattatggtctct 194  Q
    ||||||||||||||||||| ||||||| ||| ||||  | ||||||||||||||| ||| ||||| |||||||    
T  11736 gggaacacaccctttgaacattttcttgtcattgatatttatgtttaaagtcatcaatactattacggtctct 11664  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 5520567 - 5520500
Alignment:
Q  128 acaccctttgaac-tttttcttatcaatgatgctcatgtttaaagtcatcgatattattatggtctct 194  Q
    ||||||||||||| |||||| | ||| |||| || |||||||||||||||||||||||||||||||||    
T  5520567 acaccctttgaacatttttcctctcattgatacttatgtttaaagtcatcgatattattatggtctct 5520500  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 15597679 - 15597754
Alignment:
Q  120 tggggaacacaccctttgaac-tttttcttatcaatgatgctcatgtttaaagtcatcgatattattatggtctct 194  Q
    ||||||||||||||||||||  |||||| | ||| |||| || ||||| | |||||| ||||||||||||||||||    
T  15597679 tggggaacacaccctttgaagatttttcctctcattgatacttatgttaacagtcattgatattattatggtctct 15597754  T

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