View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8248_low_5 (Length: 460)

Name: NF8248_low_5
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8248_low_5
NF8248_low_5
[»] chr1 (1 HSPs)
chr1 (1-441)||(28734025-28734479)
[»] chr7 (2 HSPs)
chr7 (14-114)||(22110965-22111065)
chr7 (14-114)||(40583524-40583624)


Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 28734025 - 28734479
Alignment:
Q  1 tattggtaacaagatgagttcaccttattcggaagaaactgatgatgactcacctaagaagaaaaatacaaccatgttgaagaagattggagtgttgtgg 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28734025 tattggtaacaagatgagttcaccttattcagaagaaactgatgatgactcacctaagaagaaaaatacaaccatgttgaagaagattggagtgttgtgg 28734124  T
Q  101 aagaagaatcatcaatagatagatatatgcaaggttgcgtaactatgtataatatgcttctttacattcttgttagttaccatgttgagtaaatgcttta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  28734125 aagaagaatcatcaatagatagatatatgcaaggttgcgtaactatgtataatatgcttctttacgttcttgttaattaccatgttgagtaaatgcttta 28734224  T
Q  201 actcatgtttgattgtacttgtttgctttatattattatatgttgggcatcctctggtttgatcaccattcaaacaatccttggagaatatttgccttaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28734225 actcatgtttgattgtacttgtttgctttatattattatatgttgggcatcctctggtttgatcaccattcaaacaatccttggagaatatttgccttaa 28734324  T
Q  301 caaagtagtgtcacaaatgttttgaagatacattgttttgatcacattttgttctttctg--------------ttttacattatcttgttcttccatta 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||              ||||||||||||||||||||||||||    
T  28734325 caaagtagtgtcacaaatgttttgaagatacattgttttgatcacattttgctcttcctgttttacatttttttttttacattatcttgttcttccatta 28734424  T
Q  387 aaattaagggaaataacagcatgattgctcattttaaaacatgcaaaattcaagt 441  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28734425 aaattaagggaaataacagcatgattgctcattttaaaacatgcaaaattcaagt 28734479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 22110965 - 22111065
Alignment:
Q  14 atgagttcaccttattcggaagaaactgatgatgactcacctaagaagaaaaatacaaccatgttgaagaagattggagtgttgtggaagaagaatcatc 113  Q
    |||| |||||| ||||  ||||| || |||||||| || || ||||||||||| | || |||| |||||||||||||||||||||||| |||||||||||    
T  22110965 atgaattcaccctatttagaagacacggatgatgagtccccaaagaagaaaaacaaaaacatgctgaagaagattggagtgttgtggaggaagaatcatc 22111064  T
Q  114 a 114  Q
    |    
T  22111065 a 22111065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 40583624 - 40583524
Alignment:
Q  14 atgagttcaccttattcggaagaaactgatgatgactcacctaagaagaaaaatacaaccatgttgaagaagattggagtgttgtggaagaagaatcatc 113  Q
    |||| |||||| ||||  ||||| || |||||||| || || ||||||||||| | || |||| |||||||||||||||||||||||| |||||||||||    
T  40583624 atgaattcaccctatttagaagacacggatgatgagtccccaaagaagaaaaacaaaaacatgctgaagaagattggagtgttgtggaggaagaatcatc 40583525  T
Q  114 a 114  Q
    |    
T  40583524 a 40583524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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