View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8248_low_7 (Length: 398)
Name: NF8248_low_7
Description: NF8248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8248_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 387
Target Start/End: Complemental strand, 43069523 - 43069155
Alignment:
| Q |
17 |
cagttacactagaaatcctatcaccatgtggaaaacataagagtgaggagacactcatcgtgatcaatcatctacgtgtagaataagtaatataataatt |
116 |
Q |
| |
|
|||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43069523 |
cagttacactggaaaccctatcaccatatggaaaacataagagtgaggagacactcat---gatcaatcatctacgtgtagaataagtaatataataatt |
43069427 |
T |
|
| Q |
117 |
aagaagatttcatttcatcaaaaaatatgagcgattcaaaattttcctcaata-ttttgtgcatgaaatgaaacaaaaagctcttacaagattgaatttc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43069426 |
aagaagatttcatttcatcaaaaaatatgagcgattcaaaattttcctcaatatttttgtgcatgaaatgaaacaaaaagctcttacaagattgaatttc |
43069327 |
T |
|
| Q |
216 |
aaaagnnnnnnngtacggcaaaggaagatctagaccctccaaggaaactccctcttctagttattatacaagctcctcttgaagnnnnnnnnngatattg |
315 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43069326 |
aaaagtttttttgtacggcaaaggaagatctagaccctccaaggaaactccctcttctagttattatacaagctcctcttgaagcttttttttgatattg |
43069227 |
T |
|
| Q |
316 |
ttgcctttggagtgcacaagtgccggccaaagcttttgcatgatttctttttgtttctgtaatttggtctct |
387 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43069226 |
ttgcctttggagtgcacaagtaccggccaaagcttttgcatgatttctttttgtttctgtaatttggtctct |
43069155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University