View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8249_high_10 (Length: 353)
Name: NF8249_high_10
Description: NF8249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8249_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 21942711 - 21942987
Alignment:
| Q |
19 |
ttatcagggttaaagcgttcagaagctgacaaaacttataaataagggaaataaaagaaattcccattttcatcaaagtgttgaaagccattagaaacct |
118 |
Q |
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| T |
21942711 |
ttatcagggttaaagcgttccgaagatgacaaaacttctaaataagggaaataaaagaaattcccattttcatcaaagtgttgaaagccattaaaaacct |
21942810 |
T |
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| Q |
119 |
ataatttgcctggctaacaagtttgcaaatgtgtaattacctgagtttgtagcttgtataatatatatttccattgtttcagtgtgccatataactatgt |
218 |
Q |
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| T |
21942811 |
ataatttgcctggctaacaagtttgcatatgtgtaattacatgagtttgtagcttgtataatacatatttacattgtttcagtgtgccatataactatgt |
21942910 |
T |
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| Q |
219 |
cttagtctccctccctcaaaatccacttggtaaaaatacttaaaatggtattaatttaattacataatatatatgattca |
298 |
Q |
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| T |
21942911 |
ctcagtctccctccctc--aatccacttagt-aaaatacttaaaatggtattaatttgattacataagatatgtgattca |
21942987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 49 - 212
Target Start/End: Complemental strand, 10799460 - 10799296
Alignment:
| Q |
49 |
aaaacttataaataagggaaataaaagaaattcccattttcatcaaagtgttgaaagccattagaaacc-tataatttgcctggctaacaagtttgcaaa |
147 |
Q |
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||||||| |||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||| |||||| ||| ||| ||| ||||||||||| |
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| T |
10799460 |
aaaacttctaaataagggaaataaaaaaaattctcatttgcatcaaagtgttgaaagccattagaaaatatataatatgcatggttaataagtttgcaaa |
10799361 |
T |
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| Q |
148 |
tgtgtaattacctgagtttgtagcttgtataatatatatttccattgtttcagtgtgccatataa |
212 |
Q |
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| T |
10799360 |
tgtgtaactgaatgagtttgtagcttgtataatacatatttccattgtttcagtgtgccatataa |
10799296 |
T |
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