View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8249_high_14 (Length: 326)

Name: NF8249_high_14
Description: NF8249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8249_high_14
NF8249_high_14
[»] chr4 (4 HSPs)
chr4 (162-262)||(18748291-18748391)
chr4 (261-313)||(18748174-18748226)
chr4 (56-108)||(18748451-18748503)
chr4 (62-108)||(30231276-30231322)
[»] chr8 (3 HSPs)
chr8 (162-262)||(24252251-24252351)
chr8 (56-108)||(24251769-24251821)
chr8 (261-313)||(24252416-24252468)
[»] chr1 (3 HSPs)
chr1 (162-262)||(23247413-23247513)
chr1 (56-108)||(23246930-23246982)
chr1 (261-313)||(23247578-23247630)
[»] chr3 (1 HSPs)
chr3 (163-204)||(37457963-37458004)


Alignment Details
Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 162 - 262
Target Start/End: Complemental strand, 18748391 - 18748291
Alignment:
Q  162 gacacaagtagcttgaaaaatattgtgaaataactttgatcttgtgggaagctttgctatgattgtacaagactcaatcggtgtaatggtattcacttct 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18748391 gacacaagtagcttgaaaaatattgtgaaataactttgatcttgtgggaagctttgctatgattgtacaagactcaatcggtgtaatggtattcacttct 18748292  T
Q  262 a 262  Q
    |    
T  18748291 a 18748291  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 261 - 313
Target Start/End: Complemental strand, 18748226 - 18748174
Alignment:
Q  261 taggtaaagtcgatatgtggtctacattttccattaaaataaatgttgaacat 313  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  18748226 taggtaaagttgatatgtggtctacatttttcattaaaataaatgttgaacat 18748174  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 18748503 - 18748451
Alignment:
Q  56 ctgttttgttaaagattcaattttgttttcatcaatggccttatagcataccc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  18748503 ctgttttgttaaagattcaattttgttttcatcaatggccttattacataccc 18748451  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 30231276 - 30231322
Alignment:
Q  62 tgttaaagattcaattttgttttcatcaatggccttatagcataccc 108  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  30231276 tgttaaagattcaattttgttttcatcaatggccttattgcataccc 30231322  T

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Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 162 - 262
Target Start/End: Original strand, 24252251 - 24252351
Alignment:
Q  162 gacacaagtagcttgaaaaatattgtgaaataactttgatcttgtgggaagctttgctatgattgtacaagactcaatcggtgtaatggtattcacttct 261  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  24252251 gacacaaatagcttgaaaaatattgtgaaataactttgatcttgtgtgaagctttgttatgattgtacaagactcaatcgttgtaatggtattcacttct 24252350  T
Q  262 a 262  Q
    |    
T  24252351 a 24252351  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 24251769 - 24251821
Alignment:
Q  56 ctgttttgttaaagattcaattttgttttcatcaatggccttatagcataccc 108  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  24251769 ctgttttgttaaagattcaattttgttttcatcaatgaccttattgcataccc 24251821  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 24252416 - 24252468
Alignment:
Q  261 taggtaaagtcgatatgtggtctacattttccattaaaataaatgttgaacat 313  Q
    ||||||||||  |||||||||||||||||| ||||||||||||||||||||||    
T  24252416 taggtaaagtttatatgtggtctacatttttcattaaaataaatgttgaacat 24252468  T

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Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 162 - 262
Target Start/End: Original strand, 23247413 - 23247513
Alignment:
Q  162 gacacaagtagcttgaaaaatattgtgaaataactttgatcttgtgggaagctttgctatgattgtacaagactcaatcggtgtaatggtattcacttct 261  Q
    |||| ||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  23247413 gacataagtagcttgaaaaatattgtgaaataactttgatcttgcgtgaagctttgttatgattgtacaagactcaatcgttgtaatggtattcacttct 23247512  T
Q  262 a 262  Q
    |    
T  23247513 a 23247513  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 23246930 - 23246982
Alignment:
Q  56 ctgttttgttaaagattcaattttgttttcatcaatggccttatagcataccc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23246930 ctgttttgttaaagattcaattttgttttcatcaatggccttattgcataccc 23246982  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 23247578 - 23247630
Alignment:
Q  261 taggtaaagtcgatatgtggtctacattttccattaaaataaatgttgaacat 313  Q
    ||||||||||  ||||||||||||||||||||||||||| |||||||||||||    
T  23247578 taggtaaagttaatatgtggtctacattttccattaaaacaaatgttgaacat 23247630  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 37457963 - 37458004
Alignment:
Q  163 acacaagtagcttgaaaaatattgtgaaataactttgatctt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37457963 acacaagtagcttgaaaaatattgtgaaataactttgatctt 37458004  T

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