View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8249_high_20 (Length: 277)
Name: NF8249_high_20
Description: NF8249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8249_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 1114081 - 1114330
Alignment:
| Q |
18 |
atgtatcattttctcattgctagattcactcatactcatagaacccttcacagacacaatactttttctcttttctctgttgtttgcaacacagatcaac |
117 |
Q |
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| T |
1114081 |
atgtatcattttctcattgctagattcactcatactcatagaacccttcacagacacaatactttttctcttttctctgttgtttgcaacacagatcaac |
1114180 |
T |
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| Q |
118 |
ataaaggtggcacctttacattgttaagtctcataaactcatgtgggttgtcccctgaaaaagcccttaaactttcaacaaggttgcaactcataaaccc |
217 |
Q |
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| T |
1114181 |
ataaaggtgacacctttacattgttaagtctcataaactcatgtgggttgtcccctgaaaaagcccttaaactttcaacaaggttgcaactcataaaccc |
1114280 |
T |
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| Q |
218 |
taatggcccaaatgctgttattcaacttttcagaagctatggtttctctg |
267 |
Q |
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| T |
1114281 |
taatggcccaaatgctgttattcaacttttcagaagctatggtttctctg |
1114330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 267
Target Start/End: Complemental strand, 17377622 - 17377472
Alignment:
| Q |
117 |
cataaaggtggcacctttacattgttaagtctcataaactcatgtgggttgtcccctgaaaaagcccttaaactttcaacaaggttgcaactcataaacc |
216 |
Q |
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|||||||||| |||||||||| ||| || || | || ||||||| |||||||||||||| |||||||||||| | || |||||| ||| || ||||| |
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| T |
17377622 |
cataaaggtgacacctttacagtgtcaaaccttgttaattcatgtgagttgtcccctgaaacagcccttaaactcttaaacaggttgaaacccaaaaacc |
17377523 |
T |
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| Q |
217 |
ctaatggcccaaatgctgttattcaacttttcagaagctatggtttctctg |
267 |
Q |
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| T |
17377522 |
ctaatgccccaaatgctgttattcaacttctaaggaactatggtttttctg |
17377472 |
T |
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