View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8249_high_21 (Length: 267)
Name: NF8249_high_21
Description: NF8249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8249_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 3346685 - 3346936
Alignment:
| Q |
1 |
agtaatagtctctgatattcggttaacatctacttatgagtgannnnnnngcaagtatataacattataaaaagtttcttgcaaaattttgaatagtagt |
100 |
Q |
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| T |
3346685 |
agtaatagtctctgatattcggttaacatctacttatgagtgatttttttgcaagtatataacattataaaaagtttcttgcaaaattttgaatagtagt |
3346784 |
T |
|
| Q |
101 |
ttcattttttaagctagttttatcttaaaattttgacatataaacannnnnnnnnnnatgc-accaaatgatcgtaaatggtctagtattttctctaaat |
199 |
Q |
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| T |
3346785 |
ttcattttttaagctagttttatcttaaaattttaacatataaaca-ttttttttttatgcgaccaaatgattgtaaatggtcaagtattttctctaaat |
3346883 |
T |
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| Q |
200 |
aaaaacaaagtaaggatattannnnnnnngaacaagcaactaaggttattatt |
252 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3346884 |
aaaaacaaagtaaggatattattttttttgaacaagcaactaaggttattatt |
3346936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 3331485 - 3331709
Alignment:
| Q |
1 |
agtaatagtctctgatattcggttaacatctacttatgagtgannnnnnngcaagtatataacattataaaaagtttcttgcaaaat------------t |
88 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| | |
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| T |
3331485 |
agtaatagtctctgatattcggttaacatctacttatgagtgatttttttgcaagtata--acattataaaaagtttcttgcaaaataaagctcaaaatt |
3331582 |
T |
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| Q |
89 |
ttgaatagtagtttcattttttaagctagttttatcttaaaattttgacatataaacannnnnnnnnnnatgcaccaaatgatcgtaaatggtctagtat |
188 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| || ||||||||| ||||| |||| ||||| |
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| T |
3331583 |
ttgaatagtagtttcatttttaaagctagttttatcttaaaattttgatatagaaacatttttttttatgcgc-ccaaatgattgtaaacggtcaagtat |
3331681 |
T |
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| Q |
189 |
tttctctaaataaaaacaaagtaaggatat |
218 |
Q |
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||||||||||| ||||||||||||||||| |
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| T |
3331682 |
tttctctaaat--aaacaaagtaaggatat |
3331709 |
T |
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