View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8249_high_6 (Length: 432)
Name: NF8249_high_6
Description: NF8249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8249_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 425
Target Start/End: Complemental strand, 2930127 - 2929722
Alignment:
| Q |
20 |
ttccaaaatttaactttttgatggacaaaattttcgtcgttggcataaaggtaccttcacactgttacacatccacggtgtcacttatgctcttactgat |
119 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
2930127 |
ttccaaaatttaactttttgatggacataattttcgtcgttggcataaaggtatcttcacactgttacacatccacattgtcacttctgctcttactgat |
2930028 |
T |
|
| Q |
120 |
gccaaactagatgaagtcaaattagaccccaaataaagtgaacaattggaacattctaacaaggtttgtcgtcatacaagtctctatacgttatctaatg |
219 |
Q |
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||||||| | |||||||||||||||||||| || |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
2930027 |
gccaaaccaaatgaagtcaaattagacccccaacaaagtgaacaatgggaacattttaacaaggtttatcgtcatacaagtctctatacattatctaatg |
2929928 |
T |
|
| Q |
220 |
tacttttcaatgtttattgttcctacaaggtggccaaagaaatttgggacaacgtgaatgtcaagtacactggtgagaacgctactaagcataagtctgt |
319 |
Q |
| |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||| |||||| || |
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| T |
2929927 |
tacttttcgttgtctattgttcctacaaggtggccaaagaaatttgggacaacatgaatgtcatgtacactggtgagaacgctattaaggataagttagt |
2929828 |
T |
|
| Q |
320 |
tgttggaaactatcttcgataacaaatgaaagaggacaaggaaatcaaagcgtagatcaatgagtatcaccaactccttgaagaattgaagagggagaac |
419 |
Q |
| |
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|||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||| || |
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| T |
2929827 |
tgtttgaaactatctccgataacaaatgaaataggacaaggaaatcaaagcgtagatcaatgaataccaccacctccttgaagaattgaaaagggaggac |
2929728 |
T |
|
| Q |
420 |
accaaa |
425 |
Q |
| |
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| |||| |
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|
| T |
2929727 |
atcaaa |
2929722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 42 - 420
Target Start/End: Original strand, 27075263 - 27075641
Alignment:
| Q |
42 |
ggacaaaattttcgtcgttggcataaaggtaccttcacactgttacacatccacggtgtcacttatgctcttactgatgccaaactagatgaagtcaaat |
141 |
Q |
| |
|
||||| ||||| ||||||||| || || || |||||| |||||| | |||||||||| ||| | ||||||||||| ||||| |||||||| ||||| |
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| T |
27075263 |
ggacagaatttccgtcgttggaatgaacgtgtcttcactctgttagatgtccacggtgttgcttccgttcttactgatgtcaaaccagatgaagccaaat |
27075362 |
T |
|
| Q |
142 |
tagaccccaaataaagtgaacaattggaac-attctaacaaggtttgtcgtcatacaagtctctatacgttatctaatgtacttttcaatgtttattgtt |
240 |
Q |
| |
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||| ||||| ||| |||| || |||||| || |||||||||||||||| ||||||| ||| | ||| ||||| ||| ||||||| |||||||||||| |
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| T |
27075363 |
cagatgccaaacaaattgaa-aaatggaacaatgctaacaaggtttgtcgccatacaattctttctacaatatctgatgcacttttcgatgtttattgtt |
27075461 |
T |
|
| Q |
241 |
cctacaaggtggccaaagaaatttgggacaacgtgaatgtcaagtacactggtgagaacgctactaagcataagtctgttgttggaaactatcttcgata |
340 |
Q |
| |
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|||||||||| |||||||| |||||||||||| |||||||||||||||||| |||| | ||||| || || |||| || || |||||||| || ||| |
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| T |
27075462 |
cctacaaggttgccaaagacatttgggacaacatgaatgtcaagtacactgctgaggaggctaccaaacagaagttcgtggtcggaaactacctgtgatg |
27075561 |
T |
|
| Q |
341 |
acaaatgaaagaggacaaggaaatcaaagcgtagatcaatgagtatcaccaactccttgaagaattgaagagggagaaca |
420 |
Q |
| |
|
||||||||||||||||||||||| |||| | ||||||| ||||||||||||||| |||||||||||||| |||||||| |
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|
| T |
27075562 |
gcaaatgaaagaggacaaggaaataaaagtgcagatcaacgagtatcaccaactcattgaagaattgaaggcggagaaca |
27075641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 42 - 420
Target Start/End: Original strand, 26050296 - 26050669
Alignment:
| Q |
42 |
ggacaaaattttcgtcgttggcataaaggtaccttcacactgttacacatccacggtgtcacttatgctcttactgatgccaaactagatgaagtcaaat |
141 |
Q |
| |
|
||||| ||||| ||||||||| || || || |||||| |||||| | |||||||||| ||| | ||||||||||| ||||| |||||||| ||||| |
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| T |
26050296 |
ggacagaatttccgtcgttggaatgaacgtgtcttcactctgttagatgtccacggtgttgcttccgttcttactgatgtcaaaccagatgaagccaaat |
26050395 |
T |
|
| Q |
142 |
tagaccccaaataaagtgaacaattggaac-attctaacaaggtttgtcgtcatacaagtctctatacgttatctaatgtacttttcaatgtttattgtt |
240 |
Q |
| |
|
||| ||||| ||| |||| || |||||| || |||||||||||||||| ||||||| ||| | ||| ||||| ||| ||||||| |||||||||||| |
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|
| T |
26050396 |
cagatgccaaacaaattgaa-aaatggaacaatgctaacaaggtttgtcgccatacaattctttctacaatatctgatgcacttttcgatgtttattgtt |
26050494 |
T |
|
| Q |
241 |
cctacaaggtggccaaagaaatttgggacaacgtgaatgtcaagtacactggtgagaacgctactaagcataagtctgttgttggaaactatcttcgata |
340 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| |||||||||||||||||| |||| | ||||| || || |||| || || |||||||| | | |
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|
| T |
26050495 |
cctacaaggttgccaaagacatttgggacaacatgaatgtcaagtacactgctgaggaggctaccaaacagaagttcgtggtcggaaactacc-----tg |
26050589 |
T |
|
| Q |
341 |
acaaatgaaagaggacaaggaaatcaaagcgtagatcaatgagtatcaccaactccttgaagaattgaagagggagaaca |
420 |
Q |
| |
|
||||||||||||||||||||||| |||| | ||||||| ||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
26050590 |
gcaaatgaaagaggacaaggaaataaaagtgcagatcaacgagtatcaccaactcattgaagaattgaaggcggagaaca |
26050669 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 6e-47; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 239 - 410
Target Start/End: Original strand, 36610475 - 36610646
Alignment:
| Q |
239 |
ttcctacaaggtggccaaagaaatttgggacaacgtgaatgtcaagtacactggtgagaacgctactaagcataagtctgttgttggaaactatcttcga |
338 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| |||||||||||||||||| |||| | ||||| ||||| |||| ||||||||| |||||||| || |
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| T |
36610475 |
ttcctacaaggttgccgaagaaatttgggacaacatgaatgtcaagtacactgttgaggatgctaccaagcagaagtttgttgttggtaactatctatga |
36610574 |
T |
|
| Q |
339 |
taacaaatgaaagaggacaaggaaatcaaagcgtagatcaatgagtatcaccaactccttgaagaattgaag |
410 |
Q |
| |
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| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| |||||||||| |
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| T |
36610575 |
tggaaaatgaaagaggacaagaaaatcaaagtgcagatcaatgagtatcaccaactccttgcagaattgaag |
36610646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 34 - 420
Target Start/End: Complemental strand, 36611760 - 36611379
Alignment:
| Q |
34 |
tttttgatggacaaaattttcgtcgttggcataaaggtaccttcacactgttacacatccacggtgtcacttatgctcttactgatgcc---aaactaga |
130 |
Q |
| |
|
||||||||||||| | ||| ||||||||||| || | | |||||||||| || | |||| ||||| ||| ||| |||||||||| | |||||||| |
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|
| T |
36611760 |
tttttgatggacatactttcagtcgttggcatgaatgcatcttcacactgctaggcgtccatagtgtcgcttctgcccttactgatgtcgtcaaactaga |
36611661 |
T |
|
| Q |
131 |
tgaagtcaaattagaccccaaataaagtgaacaat-tgga-acattctaacaaggtttgtcgtcatacaagtctctatacgttatctaatgtacttttca |
228 |
Q |
| |
|
||||| ||||| ||| |||||| ||| |||| || |||| | || ||||| |||||| ||| ||||||| ||| | ||| |||| ||||| |||| |
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|
| T |
36611660 |
tgaagccaaatcagatcccaaacaaattgaaaaaaatggacaaatgctaaccaggtttttcgccatacaattctttctac---atctgatgta-ttttgg |
36611565 |
T |
|
| Q |
229 |
atgtttattgttcctacaaggtggccaaagaaatttgggacaacgtgaatgtcaagtacactggtgagaacgctactaagca-----taagtctgttgtt |
323 |
Q |
| |
|
||| ||| |||||||||||||| |||||| |||||||||||||| |||||||||||| ||||| |||| | | ||| || || || || ||||||| |
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|
| T |
36611564 |
atgattactgttcctacaaggttgccaaacaaatttgggacaacatgaatgtcaagtgcactgctgaggatgttaccaaacagaagttatgtttgttgtt |
36611465 |
T |
|
| Q |
324 |
ggaaactatcttcgataacaaatgaaagaggacaaggaaatcaaagcgtagatcaatgagtatcaccaactccttgaagaattgaagagggagaaca |
420 |
Q |
| |
|
||||||||| ||| |||||||||||||||||| |||||||||| | | || ||||||||||||||||||||||||||| |||||||| |
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|
| T |
36611464 |
ggaaactat----gatgacaaatgaaagaggacaatgaaatcaaagtgcaaat-------tatcaccaactccttgaagaattgaaggcggagaaca |
36611379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 74 - 198
Target Start/End: Original strand, 36610347 - 36610471
Alignment:
| Q |
74 |
cttcacactgttacacatccacggtgtcacttatgctcttactgatgccaaactagatgaagtcaaattagaccccaaataaagtgaacaattggaacat |
173 |
Q |
| |
|
|||||||||| || || ||||||||||| ||| ||||||||||||| ||||| |||||||| ||||| ||| |||||| ||| |||| ||| | | || |
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|
| T |
36610347 |
cttcacactgctagacgtccacggtgtcgcttccgctcttactgatgtcaaaccagatgaagccaaatcagatcccaaacaaattgaaaaatggacaaat |
36610446 |
T |
|
| Q |
174 |
tctaacaaggtttgtcgtcatacaa |
198 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
36610447 |
gctaacaaggtttgtcgccatacaa |
36610471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 34 - 392
Target Start/End: Complemental strand, 14636269 - 14635923
Alignment:
| Q |
34 |
tttttgatggacaaaattttcgtcgttggcataaaggtaccttcacactgttacacatccacggtgtcacttatgctcttactgatgccaaactagatga |
133 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| || | | |||||||||| || || ||||||||||| ||| ||| | ||||| ||||||||||| |
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|
| T |
14636269 |
tttttgatggacataattttcgtcgttgacatgaacgcatcttcacactgctagacgtccacggtgtcgcttccgct---aatgatgttaaactagatga |
14636173 |
T |
|
| Q |
134 |
agtcaaattagaccccaaataaagtgaacaattggaacattctaacaaggtttgtcgtcatacaagtctctatacgttatctaatgtacttttcaatgtt |
233 |
Q |
| |
|
|||||||| ||| |||||| ||| ||| ||| | | || |||||||||| || ||||||| ||| | || ||||||||||| |||| |
|
|
| T |
14636172 |
agtcaaataagatcccaaacaaatcgaaaaatggacaaatgttaacaaggttcgtaaccatacaattcttt---------ctgatgtacttttcgatgtc |
14636082 |
T |
|
| Q |
234 |
tattgttcctacaaggtggccaaagaaatttgggacaacgtgaatgtcaagtacactggtgagaacgctactaagcataagtctgttgttggaaactatc |
333 |
Q |
| |
|
|| |||||||| |||| ||||||||||||||||||||| ||||||||||||||| || |||| | ||||| || ||||| | | |||||||||||||| |
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|
| T |
14636081 |
tactgttcctatgaggttgccaaagaaatttgggacaacatgaatgtcaagtacattgatgaggatgctaccaaacataaatttattgttggaaactatt |
14635982 |
T |
|
| Q |
334 |
ttcgataacaaatgaaagaggacaaggaaatcaaagcgtagatcaatgagtatcaccaa |
392 |
Q |
| |
|
| || | ||||||||||||||||| |||||||||| | |||||||||||||||||||| |
|
|
| T |
14635981 |
tacggtggcaaatgaaagaggacaatgaaatcaaagtgcagatcaatgagtatcaccaa |
14635923 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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